Basic Information

Insect: Acronicta psi
Gene Symbol: ZFP42
Assembly: GCA_946251945.1
Location: CAMIUM010000048.1:1451586-1465429[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.21 13 6.7 0.6 1 19 43 61 43 63 0.75

2 13 6.6e-05 0.0041 17.7 2.8 1 23 82 105 82 105 0.97

3 13 0.011 0.69 10.7 1.9 3 23 114 135 112 135 0.96

4 13 3.2e-05 0.002 18.7 1.5 1 20 140 159 140 161 0.94

5 13 2.5e-07 1.5e-05 25.3 0.2 1 23 172 195 172 195 0.97

6 13 0.77 48 4.9 6.8 1 23 201 223 201 224 0.95

7 13 0.015 0.91 10.3 3.1 1 23 231 253 231 253 0.98

8 13 0.0099 0.61 10.9 0.1 1 23 258 280 258 280 0.97

9 13 1.5e-06 9.3e-05 22.9 3.5 1 23 286 308 286 308 0.98

10 13 0.0068 0.42 11.4 0.5 3 23 313 333 312 333 0.93

11 13 0.29 18 6.3 0.3 8 23 351 366 340 366 0.89

12 13 0.00028 0.017 15.7 3.1 1 23 372 394 372 394 0.97

13 13 1.1 66 4.5 0.7 3 23 402 424 401 425 0.79

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.21	13	6.7	0.6	1	19	43	61	43	63	0.75
2	13	6.6e-05	0.0041	17.7	2.8	1	23	82	105	82	105	0.97
3	13	0.011	0.69	10.7	1.9	3	23	114	135	112	135	0.96
4	13	3.2e-05	0.002	18.7	1.5	1	20	140	159	140	161	0.94
5	13	2.5e-07	1.5e-05	25.3	0.2	1	23	172	195	172	195	0.97
6	13	0.77	48	4.9	6.8	1	23	201	223	201	224	0.95
7	13	0.015	0.91	10.3	3.1	1	23	231	253	231	253	0.98
8	13	0.0099	0.61	10.9	0.1	1	23	258	280	258	280	0.97
9	13	1.5e-06	9.3e-05	22.9	3.5	1	23	286	308	286	308	0.98
10	13	0.0068	0.42	11.4	0.5	3	23	313	333	312	333	0.93
11	13	0.29	18	6.3	0.3	8	23	351	366	340	366	0.89
12	13	0.00028	0.017	15.7	3.1	1	23	372	394	372	394	0.97
13	13	1.1	66	4.5	0.7	3	23	402	424	401	425	0.79

Sequence Information

Coding Sequence: ATGCCCCCTAAACGAAAGAAGCTGGGGCGTCCGCCGGGGTCCAAAAATAAGAAGTATAACAAAAAAATTGAGAAAACTGAATCTGTGAGAATGAAGAAGGAAAACGATAAATCGGAAAACATTGAATATATTTGTCACATTTGCAGTAAGAAATTCCTTACAGGACAGGCGTTGTTGACACATCATGAATTTTGCCAGAGTTGTTATTTAGAAATGCCTGAAATAGTTTTCAAAAAGGCAGCATTCAGTTGCAAAGAATGCCCCAAAAAGTTCAGGTTCAAGAAAAGTTTCATAGAACACCTTCAGAAAGAGCACTCCAAGCTACCTAATAGCATTGCCTGTAATCAGTGCAATGTCCACTGTCCAAACAAAAACACTTTAATTGACCATATTAAGAAAGTCCATGAGAGAGAAATTTTTGCATGTCCACATTGCAAACGAAAATTTGTCCGGCGTTCACATGTACTGCGACATATGGCACAGACTGGATGTAATGGACAAGCTGTTGCATCATACAATTGTGAGATATGTGATGCAACATTTTCAAGAAAAGACAATTTAATGGTACACATTAGGTTACAACATATTATTAAAAGGAAGTTTAATTGCAAGAACTGTCTGTACTCTACTAAGAACTTTTCTAAATTGGTTAACCATTGGCACAAACACCATTCAGAGACACCTGATCAGTATCAATGTCACCATTGCAGCAAATGGACCAGCTCTCGAGCCGCCATGACCAAACACCTTGAGATACATGGCGAGAAGAAATATGCATGTGATGTGTGCGGGTACAGTACGTACACAATCGAGGTGATGCGGCGGCACGTGCTGACGCACGTCGAGGACAAGCCGTACAAATGCACGCACTGCGACAAGTCGTACATACAGCGTGTACAGCTGCAGCGCCACCTCGAGAAACATACCGGCAACAGGTGCATCGAGTGCGACGAAACGTTCAATTCCAGAGCCAGGTTCCTGGTTCACATGAGGGAGCACATGGGATTAGAAAAATTACATTGCCCTATAAAGACATGTGTTTACTCGACAAAAGAATTCATCAATGAAGCTAGCCTGAATAATCATTTGAAGGTGCATTTAGATGAGAAACCGCACAGTTGCGAGGTATGCGCCAAGAGGTTCCACTCTGAAGTGAACCTCCGGCGGCACCTGGAGACGCACACGCTGGACCAGCCGCGGCGCTGCATGTACTGCGTGTCGGCGCGCGCCTACGTGCGCGGCGTGCAGCTCATCCGCCACGTGCGCAAGCACCACCCCGCCGTGTTCCGCGGGCACCTGCACCACGTGCGGCAAGTGCTCGGTACTAATGATTCAGTAGAACGAGTTAAGAAGTCTGAAATAGAATCCATCCTAAATTTGTTAGATGTGGAGTCTGATCGTATTCTGCAAGGCTATAGCGGATCCGGTGTACTCTACGGTGGCATGCAGGAAGACGACAGCGGCACCACCACCAGTGACAAGCACCAGGACAAGAAAGGAAATAGTCCCCTTATGTCAGAGGATGAGCTCACAGAGAATTTAAAAATGCTACTCTCACAACTTCTTGATAAAGAGACACTTGATCTCTTTGGTTGGCCAGACGAAAGTATAGACGTGgtactcgagaaagtaataatgcagtgtggtgccaagcctgctgaccgcgagaaatggacacgcgtgcagcgccttcgcgaaaactccaagcatttgttcttatacgttattgaagacaaaaatatagcgcgcatgcttgacacacataccattgatcaaatcgtcaaacatatactcaagcaagtcagtgaAGATGACACCAAGTAA
Protein Sequence: MPPKRKKLGRPPGSKNKKYNKKIEKTESVRMKKENDKSENIEYICHICSKKFLTGQALLTHHEFCQSCYLEMPEIVFKKAAFSCKECPKKFRFKKSFIEHLQKEHSKLPNSIACNQCNVHCPNKNTLIDHIKKVHEREIFACPHCKRKFVRRSHVLRHMAQTGCNGQAVASYNCEICDATFSRKDNLMVHIRLQHIIKRKFNCKNCLYSTKNFSKLVNHWHKHHSETPDQYQCHHCSKWTSSRAAMTKHLEIHGEKKYACDVCGYSTYTIEVMRRHVLTHVEDKPYKCTHCDKSYIQRVQLQRHLEKHTGNRCIECDETFNSRARFLVHMREHMGLEKLHCPIKTCVYSTKEFINEASLNNHLKVHLDEKPHSCEVCAKRFHSEVNLRRHLETHTLDQPRRCMYCVSARAYVRGVQLIRHVRKHHPAVFRGHLHHVRQVLGTNDSVERVKKSEIESILNLLDVESDRILQGYSGSGVLYGGMQEDDSGTTTSDKHQDKKGNSPLMSEDELTENLKMLLSQLLDKETLDLFGWPDESIDVVLEKVIMQCGAKPADREKWTRVQRLRENSKHLFLYVIEDKNIARMLDTHTIDQIVKHILKQVSEDDTK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00383962;
90% Identity: iTF_00017619;
80% Identity: -