Apsi005566.1
Basic Information
- Insect
- Acronicta psi
- Gene Symbol
- -
- Assembly
- GCA_946251945.1
- Location
- CAMIUM010000018.1:1796623-1806721[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.028 1.8 9.4 6.3 1 23 260 282 260 282 0.97 2 12 1.1e-05 0.00068 20.2 1.8 2 23 290 311 289 311 0.95 3 12 0.1 6.3 7.7 1.4 1 23 315 337 315 337 0.97 4 12 1.4e-05 0.00085 19.8 0.7 1 23 342 365 342 365 0.98 5 12 0.00029 0.018 15.7 0.1 3 23 371 392 370 392 0.96 6 12 0.0077 0.47 11.2 0.2 3 21 407 425 406 430 0.91 7 12 0.00031 0.019 15.6 0.5 3 23 440 461 440 461 0.98 8 12 0.32 20 6.1 0.9 2 23 481 503 481 503 0.95 9 12 0.0026 0.16 12.7 1.6 2 23 515 536 514 536 0.96 10 12 0.0021 0.13 13.0 4.1 1 23 542 564 542 564 0.99 11 12 1e-05 0.00062 20.3 0.2 1 23 570 592 570 592 0.97 12 12 0.00083 0.051 14.2 1.5 1 23 598 621 598 621 0.98
Sequence Information
- Coding Sequence
- ATGGCAGACGTAAAAGTGTGCCGTATTTGTTTGAATTTAAATGTGAAAATGTTTGATCTGCTATCATATCCGCTGGAATCATATTTTTCATCCATAATGATTGACAGTAAACCTTCATACCATAACTTACCAACCTATGTTTGCTATGAGTGTGCAGCACTTTTGAAGAAGTTTCACATGTTTAGACAGAAGTGTCTACAGAGCCAGGCGGTACTATGTGGAGTACTAGATGATTGTGGCAAGTTAACACAAGCATCAATAAAATCAATCCATAGAGAAAGCCTTCTCACAATTTCAAATTTTACACACCTTGAAATAGATCAAGAAGACACATCAAAGGATATGAGCATGGTTAGGCCGGAACTGGCCAATGAAATGATAAAGAAAGAAGTTTATGATGATATTCCCAATATGAGTCCTGATTTTGGCTCTAGCGATGATGATGAAAGTAAAGACGGAAATTATGTAGAGAATACTGAGGTTACTGTGAAGGTAGACTGTTTTGAGGAGGAGTTTGAAGAGCCCGAGCTCGCTGAAACTACAGTAGAGGTAAAGATGCCACCTAAAAAAATTCGAATATCCCGACAAAGGAAGGAAGCACGGCCAAAGAGAACTGATACAACTACACCTAAGAAGAGTTCTTCTAAAGGAGAAGGTGATCCATTAAGCATCGAAAATGATGATTTGAAGGACATCACTGTTGTTACCTTATCGCTTGAAGAGCAGTTAGAAGAAGTAAACAAGCGAAAGCAGTCGTCCAACTACCTGAACTGTCCGTACCAGTGTCACCTGTGCTACAAGGGGTTCAACAATACGCATGCGTGGGAACACCACGTCACTAAACATTCTCCGAACGCAGGCGACCTAGAGTGTTCAATATGCAAGTACAGATTTAAAACGAAACGCAATCTTCAGAGGCATGCGCTAAACCACGGGAAGAAATATGTTTGTAAATTATGCCCATACAACTCTAGCAACATTACAACGGTCAAGCATCACCAGGGTTCTCACAAAGGAGTAACATACAAGTGCGAATATTGCGATGAAGTCTTCACAGTAAGGACGACGTATGTGGTCCATATACGGAGCAAGCATCCGTCAGAAAACATTTGCGGGTACTGTGGGTACTCGTTTTACAGCAAGCAGGGCCTTGTCGTACACAAGAATATGGTGCACAGAGATATAGTAAAATCTGAAGAGAAGAAAGATGGTCCGTACTGCGCGGAGTGTGACGTCAAGTTCATATCTACAGAAGCGTTTAAACGACATATGGTGACATCCGTCAAGCACACCAAGACTGCTGACTCTATTAACGGTTGCCGTGTATGCGGCGCGACGTTCGAGGATCCTGAAGAGTTGCGGCTGCACCACCGCAAAGAGCACCCCAAGAAACAGCCCCAGCACTACCGCAAGAAGACTACTAGCAGCAAGTGGCCGGCCAAGTGCGAACATTGTTCTGAACAGATTGCAAATGCGCGCGCTTATTGGAAGCACTTCCGTCTGATGCACCCCAACGAGAACTATCCCGTGCAGAAGAAATGCGTGTGTGATATATGTGGTAAACGATTCGCGTGCAACGCTCTGCTGGCGCTACACAAGCGCGTGCACGCTGGGGCACGTCCGTACCAGTGCGGGCGCTGCTCGCGCGCGTGCTACAGCGCGCACGACCTGCGCGTGCACCAGCAGAAGCACTCCGACGCGCGCCCCTTCGCCTGCGCGCTCTGCCCGCAGGCCTTCAAGCGGAAGGAGGCGCTCCAGAGGCATACTAAGATACATTCTGGTGATAATCCATACAAATGTGAGATATGCGGGGTCGCGTTCAACAAATCGTGTACGAGAACCCTGCATGTGCGCACAGTACACACTAAGGAGCCACCTTCGCGCAAACAACGAAGCAAACTCCCCAAATAA
- Protein Sequence
- MADVKVCRICLNLNVKMFDLLSYPLESYFSSIMIDSKPSYHNLPTYVCYECAALLKKFHMFRQKCLQSQAVLCGVLDDCGKLTQASIKSIHRESLLTISNFTHLEIDQEDTSKDMSMVRPELANEMIKKEVYDDIPNMSPDFGSSDDDESKDGNYVENTEVTVKVDCFEEEFEEPELAETTVEVKMPPKKIRISRQRKEARPKRTDTTTPKKSSSKGEGDPLSIENDDLKDITVVTLSLEEQLEEVNKRKQSSNYLNCPYQCHLCYKGFNNTHAWEHHVTKHSPNAGDLECSICKYRFKTKRNLQRHALNHGKKYVCKLCPYNSSNITTVKHHQGSHKGVTYKCEYCDEVFTVRTTYVVHIRSKHPSENICGYCGYSFYSKQGLVVHKNMVHRDIVKSEEKKDGPYCAECDVKFISTEAFKRHMVTSVKHTKTADSINGCRVCGATFEDPEELRLHHRKEHPKKQPQHYRKKTTSSKWPAKCEHCSEQIANARAYWKHFRLMHPNENYPVQKKCVCDICGKRFACNALLALHKRVHAGARPYQCGRCSRACYSAHDLRVHQQKHSDARPFACALCPQAFKRKEALQRHTKIHSGDNPYKCEICGVAFNKSCTRTLHVRTVHTKEPPSRKQRSKLPK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -