Apsi012917.1
Basic Information
- Insect
- Acronicta psi
- Gene Symbol
- -
- Assembly
- GCA_946251945.1
- Location
- CAMIUM010000045.1:1666347-1668587[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0037 0.23 12.2 0.8 2 23 245 266 244 266 0.97 2 11 2.3e-05 0.0014 19.2 1.4 1 23 272 294 272 294 0.98 3 11 0.14 8.5 7.3 5.2 1 23 299 321 299 321 0.95 4 11 0.017 1 10.1 0.4 1 20 327 345 327 348 0.87 5 11 0.17 11 7.0 0.7 2 23 354 376 353 376 0.94 6 11 2e-05 0.0013 19.3 0.2 2 23 381 402 380 402 0.97 7 11 0.00074 0.046 14.4 7.7 1 23 408 430 408 430 0.99 8 11 0.0003 0.018 15.6 1.2 1 23 436 458 436 458 0.98 9 11 1.2e-05 0.00073 20.1 1.4 1 23 464 486 464 486 0.98 10 11 4.4e-05 0.0027 18.3 0.3 1 23 492 515 492 515 0.94 11 11 0.00024 0.015 15.9 3.3 2 23 522 545 521 545 0.91
Sequence Information
- Coding Sequence
- ATGGATGGAATGGATGAAATTGAGGAACAGAATGTTATTAAGAGTAACTGTATACAACATAAATCAGATGATAATACGCTGATACAACAGGAATGTTCAACTGATGAGGGTAATTCCAAGATAACCAATAAAATTTTGGGTAACAGTGAACAGGATGGAATCAAAAGTAGTGGTTTAAATGACATCCAACCAACAGAAAATGGAATTTCTTATGAAATCTTAGAAATTGATGACACTATAACCACTTATAATGAAGAAAATACAATTGAAAGTGCAATTAAAGACATTCAAATAGATGAGGGTAAAAATGAAGAGGACACTCAAATATTAGAAATAAATAACGATAAGGGTAATGAAATGGGTAATACTGATCAGCAAAGCCTAGAAAAATTGCATGAAGTTTCAGTTATACGTGAAACTCAGGGTAAAGGGAGAGAGGAAGGGAATCTCGGTCAAAATGATGCTATGGTTAAAATCTGCCGAAGTCCAATAGATGACAAGGATAACAGTCACCATGCTGGTTTGAAGAGAAGACTTAAGAAAGAGCTTGAGCTGCTGGGTGCTGATATAAATACAAACGATTTTGAGAGTAAATTTGATGTTTACGGTAATAACAGTCAAATTTACAGAAAGTACAGGCTGAGAAAAACTGAACAAAAAGTCTCATATAAAGAGCCCTCAGATTGGAAGCCAAAACGGTGCGTAACTCCAGATAATATGCCAATATCGTTACAATGTGGCGTGTGCTATCAAGAGTTTGAATCTAAGAGGGCGCTTCATGGCCACCTACGGAGTCATGGCACTGTCCTAGAATACACCTGTTCACTATGCTCCCAGAAATTTAGCAAAAATTCAGATCTTATCGCACACAAATCAACACACACCACCGAGTCGTTCCTCTGCAAGCAATGTAAAGTCGCATTCTCAGACCACTGTGACTACTTGCAGCACAAACTAACGCATTCCACTCGGTCACACTTCACATGCCCCGAATGTGGGCTCAATTACAACCGAACAAGCTACAAAATACATATTTGGACTCATTTCAATAAGAAATTGAATTGTCATTTGTGTTCTTATATTGGCAATGGAGAGAATAATCTTCAAAACCATATAAATCAACAACACATACACAGTAAAACTTGTGTTGAATGTGGCCGAGTGTTTCCCAACAGTAATACTTTAGAATACCACATGATTTCTCATACCGGTGTGAAAAAATACCAGTGCCTATACTGTGGCAAATGCTTTGCCACTAACTGTACTAGGAAACTTCATACTCGGACGCATACCGGTGAAAAACCTTACACTTGTGACATTTGCGGGCACAAATCAGCGCAGTCTAACGACTTGAAGCTCCATAAAATTACTCATGAGACCGAGAAAAAATATTCATGTGAATTATGCCCCAAAAAGTATTTCTACAAATCATATTTGGTAATCCACATGAGGTCTCATACACAAGAGAATTTGTACGAATGTCCGGAATGTGACGGCAAGTTTGTAAATCCTAGTGGATTGAAAACTCATTATATGTTCAAGCATTTGAGTGAACGGCCTGTGGAGTGCTCGGTTTGTAACAAACACTTTATCAACAATAATCAGTACAAAAGACATACAAGATCAAAGTATCATAGAAGAAATATGTATGGCCATATGTTAAACAATGGAAAAGAGTGA
- Protein Sequence
- MDGMDEIEEQNVIKSNCIQHKSDDNTLIQQECSTDEGNSKITNKILGNSEQDGIKSSGLNDIQPTENGISYEILEIDDTITTYNEENTIESAIKDIQIDEGKNEEDTQILEINNDKGNEMGNTDQQSLEKLHEVSVIRETQGKGREEGNLGQNDAMVKICRSPIDDKDNSHHAGLKRRLKKELELLGADINTNDFESKFDVYGNNSQIYRKYRLRKTEQKVSYKEPSDWKPKRCVTPDNMPISLQCGVCYQEFESKRALHGHLRSHGTVLEYTCSLCSQKFSKNSDLIAHKSTHTTESFLCKQCKVAFSDHCDYLQHKLTHSTRSHFTCPECGLNYNRTSYKIHIWTHFNKKLNCHLCSYIGNGENNLQNHINQQHIHSKTCVECGRVFPNSNTLEYHMISHTGVKKYQCLYCGKCFATNCTRKLHTRTHTGEKPYTCDICGHKSAQSNDLKLHKITHETEKKYSCELCPKKYFYKSYLVIHMRSHTQENLYECPECDGKFVNPSGLKTHYMFKHLSERPVECSVCNKHFINNNQYKRHTRSKYHRRNMYGHMLNNGKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -