Apsi000516.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Acronicta psi
Gene Symbol
-
Assembly
GCA_946251945.1
Location
CAMIUM010000002.1:1538241-1553315[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.0064 0.4 11.4 5.9 1 23 363 385 363 385 0.98
2 11 6e-05 0.0037 17.8 1.1 1 23 391 413 391 413 0.98
3 11 9.4e-05 0.0058 17.2 1.7 1 23 419 442 419 442 0.96
4 11 0.044 2.7 8.8 3.2 1 21 448 468 448 470 0.95
5 11 0.00014 0.0086 16.7 2.7 1 23 476 498 476 498 0.99
6 11 1.9e-05 0.0012 19.4 5.3 1 23 504 526 504 526 0.98
7 11 0.0043 0.27 12.0 0.9 1 23 534 557 534 557 0.97
8 11 0.029 1.8 9.4 4.5 2 23 564 585 563 585 0.96
9 11 6.3e-05 0.0039 17.8 2.8 1 23 591 613 591 613 0.98
10 11 7.9e-06 0.00049 20.6 2.3 1 23 619 642 619 642 0.96
11 11 9.4e-06 0.00058 20.4 3.8 1 23 656 678 656 678 0.97

Sequence Information

Coding Sequence
ATGGGAAGTATTCGCACTCCTAGCGATAATGAAAAACACAACATTCATGAAGGCTTCTCGCGGATCAAGATAATAGGAAAACCTAGAAATCGAACTTTTGACTCTGGTCCTTTCGAGGACGAAATTATTCAAGCAACGCAGACAGCAGTAGGAATCGTGGCGGTCCCAGATAACCAGGAAAACCTAGAGATAGAAATTTTAGTTCCGATAGCGCTAGAGGACGAAAATATTCAAAACACGCCGATAGGCCAAGCGATCCTGGCGGACAAAGATAATCCGGCAAGATTAGACATAAAAGAATTCGTTCCGGTCGCTCAAGAGGGCGACATAATTCAAGAAAATCATTCTGATCGCGACAGCCTGGAGGACCAAGATAGCTCCTCAGACCAAGAAAACGAGAATAATATTGAAATAAAACAATATATTATAGTCACCCCTAAGGAGGACATAATACAAGAAGAAAACCAAGCCAAGGAAAGCCTGGTTAGCCAAGATAGCGCGTCTAACGAAGATAGCCAGGAGAGCCTGACAGAGGAAGCCGATATGCCTCCCCCAGATAAAAAGGAAAAGACCAAGCAAACGCTAATGCAGTCGTACTTGAATCAAGGAACTGCAGTCATAGCAGTGAACGGAGCAACGACGGATGATGAGGCTGAAAATACTGGCGTCACGTACTTTGTAGATGAACACGGCAGGTACTACTACCAGCAAGCTGGCGCGAACCAGAACTTCGTCTCCATTGACTCTTCACCAGTCAATGAGGATACTGCGGAGCCCGCAAGTGATTCTGAACAGATAATGGGTGATCAAGAAGCTGAAAGTTACCAGACTGTCACTCTGGTACCTTCGGAGTCCAGCAACGGAGAGGTCAGCTATGTGCTGGTTGTGCAGGAGGAAAACAAGCCAGTTGTCAACATCGATCTCAAGGTGGACGAGGCCGATCAGGGGGAGAAAGGCAATGAAGACGTGTATAACTTCGACGACGAGGAGGAAGGCGGCGAGGAACCTTCGGAGGAAGAGGAGGAGGCGGCTGCTGAGGGGAAGGCCAAGACTACTCAGAAGCGGACGAAGCACGTGCGCCCTCACTTCACCTGCAACTTTTGCTCCTATACTAGTCATCGCCGCTATCTGCTCCTCCGTCACATGAAGTCTCACTCGGAGGACCGTCCGCACAAGTGCAACGTGTGCGAGCGCGGCTTCAAGACCGTGGCCTCGCTGCAGAACCACGTGAACATGCACAACGGCGTCAAGCCCCACGTCTGCAAGTACTGCAACAGCCCTTTTACTACATCTGGCGAGCTGGTCCGCCACGTGCGCTACAAGCACACTCACGAGAAGCCGCACAAGTGCTCCGAGTGCGACTACGCGTCCGTGGAGCTGTCGAAGCTGCGTCGGCATGTGCGCTGCCACACCGGCGAGAGGCCGTACCAGTGCCCCCACTGCACATACGCGTCGCCGGACACTTTCAAGCTGAAGCGCCACCTGCGCACGCACACTGGGGAGAAGCCGTACAAATGCGAACACTGCAACATGTGCTTCACGCAGTCCAACTCGCTGAAAGCGCATCGGCTGATCCATAATGTGTCGGAAAAACCCGTGTACTCGTGCGAGTTGTGCCCGGCCAAATGCGGTCGCAAGACGGACCTGCGAATACACGTCCAGAAGCTGCACACGTCGGACAAGCCGCTCAAGTGCCGCCGCTGCGGGAAGACCTTCCCCGACCGATACTCCTGCAAGGTGCACAACAAGACCCATGAGGGCGAGAAGTGCTTCAAATGCGACCTGTGCCCATATGCGTCGACCACGCAGCGCCATCTCAAGTCGCACATGCTCAAACATACAGACGAGAAGCCGTTTGTTTGCGACCAATGCAACCAGTCTTTCAGGCAAAAGCAGCTGCTCCGCCGTCACCAGAACTTGTACCACAATCCGAGCTACGTGCCGAAGCCACCCAAGGAGAAGACGCACTCTTGCCACGAGTGCAACCGCATGTTTGCCCACAAGGGCAACCTGATCCGCCACCTCGCGGTCCACGACCCGGAGTCCGGCCACCATGAGCGCGCCCTCGCTCTTAAGATCGGAAGGCAGAGGAAGGTGAAGTTCGTTGATGGACAGTTGGTCAAGGATATCGGCAACCTCGAGGCCACAGGTGGTGCAGAAATGATGAAGCTAGGTCTCAGCAACAACGAGCTGAAACGCGGCGAGCTGGTGACGGTGGCCGACGGGGACGGCCAGCAGTACGTGGTGCTGGAGGTGATCCAGCTGGAGGACGGCACCGAGCAGCAGGTCGCGGTCGTCGCGCCCGACTACATGGACGAGGATGAACCAGAAGAGGAGGAAGAGGAAGAAGAAGAAGAGGAGGAAGAAGGACAAAGGGACAGGGATTATGAAATAAAAGAACCTATAAATGTGGCCGACCGGAGCATCAAACTTGAAAAGGAGGTCGACAGCTGCTTCGGCTTTGATGAGGAGGAAGAGGACCCGGACGATGATGATTACACTGATAAAGTAGTGTTGCGTTTAGTTTAA
Protein Sequence
MGSIRTPSDNEKHNIHEGFSRIKIIGKPRNRTFDSGPFEDEIIQATQTAVGIVAVPDNQENLEIEILVPIALEDENIQNTPIGQAILADKDNPARLDIKEFVPVAQEGDIIQENHSDRDSLEDQDSSSDQENENNIEIKQYIIVTPKEDIIQEENQAKESLVSQDSASNEDSQESLTEEADMPPPDKKEKTKQTLMQSYLNQGTAVIAVNGATTDDEAENTGVTYFVDEHGRYYYQQAGANQNFVSIDSSPVNEDTAEPASDSEQIMGDQEAESYQTVTLVPSESSNGEVSYVLVVQEENKPVVNIDLKVDEADQGEKGNEDVYNFDDEEEGGEEPSEEEEEAAAEGKAKTTQKRTKHVRPHFTCNFCSYTSHRRYLLLRHMKSHSEDRPHKCNVCERGFKTVASLQNHVNMHNGVKPHVCKYCNSPFTTSGELVRHVRYKHTHEKPHKCSECDYASVELSKLRRHVRCHTGERPYQCPHCTYASPDTFKLKRHLRTHTGEKPYKCEHCNMCFTQSNSLKAHRLIHNVSEKPVYSCELCPAKCGRKTDLRIHVQKLHTSDKPLKCRRCGKTFPDRYSCKVHNKTHEGEKCFKCDLCPYASTTQRHLKSHMLKHTDEKPFVCDQCNQSFRQKQLLRRHQNLYHNPSYVPKPPKEKTHSCHECNRMFAHKGNLIRHLAVHDPESGHHERALALKIGRQRKVKFVDGQLVKDIGNLEATGGAEMMKLGLSNNELKRGELVTVADGDGQQYVVLEVIQLEDGTEQQVAVVAPDYMDEDEPEEEEEEEEEEEEEGQRDRDYEIKEPINVADRSIKLEKEVDSCFGFDEEEEDPDDDDYTDKVVLRLV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-