Apsi005410.1
Basic Information
- Insect
- Acronicta psi
- Gene Symbol
- -
- Assembly
- GCA_946251945.1
- Location
- CAMIUM010000017.1:7192906-7195705[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0014 0.089 13.5 4.8 1 23 146 169 146 169 0.97 2 19 0.0028 0.17 12.6 1.3 1 23 178 201 178 201 0.96 3 19 0.016 1 10.2 0.7 2 23 214 236 214 236 0.97 4 19 0.00055 0.034 14.8 1.1 1 23 245 268 245 268 0.97 5 19 0.00029 0.018 15.7 2.9 1 23 281 304 281 305 0.96 6 19 0.00016 0.01 16.5 0.6 2 23 333 355 332 355 0.96 7 19 0.0012 0.072 13.8 1.2 2 23 365 387 364 387 0.96 8 19 0.036 2.2 9.1 0.5 2 19 392 409 391 412 0.92 9 19 0.00055 0.034 14.8 0.5 2 21 417 436 416 439 0.94 10 19 0.063 3.9 8.3 0.8 3 23 449 470 448 470 0.93 11 19 0.00025 0.016 15.9 3.5 1 23 475 498 475 498 0.94 12 19 0.00013 0.0078 16.8 1.6 2 23 510 532 509 532 0.96 13 19 0.38 24 5.9 0.8 1 23 559 582 559 582 0.92 14 19 0.21 13 6.7 0.1 2 23 589 610 588 610 0.93 15 19 0.23 14 6.6 3.1 3 23 617 637 615 637 0.96 16 19 4.2 2.6e+02 2.6 2.0 3 23 645 667 643 667 0.90 17 19 2.3 1.4e+02 3.4 0.5 2 23 675 696 674 696 0.93 18 19 0.018 1.1 10.1 0.1 1 23 703 725 703 725 0.97 19 19 0.077 4.8 8.0 1.9 1 23 731 754 731 754 0.97
Sequence Information
- Coding Sequence
- ATGGAAGTCGATATTAAGATTAAGATAGAAGACGATGTAAGGAAAGATCCTACCTCATTTTTACCTGAGGAGCCGATGTCTTATGAAATTAAGAGAAAAAAGAAGAAAAAGAAAAAGCTACAGGAGGACCCATTCAAGGATATTGATGATAAGATGGAAGTTAAAATTGAACCAGTAACTTTATTGGATCCAGAGGTTAAAATTAAAGTTGAGAATATTGATGTGGAATTGGATTTTAATGATTTTACAGACAATGGAGAATTAATGCTCCAAGGCCCACAAAGCGAGGAAAGTCAAGAACCAGTGGTTAAAATCGAGCAGCAAAGCCATGAAGCTGTCCTACTAACCTTTGAGAGTGTCATAAACAATAAAGCAATTATAAAAAAAGACGAGTTGTTCCCAAACAGCGATCTACCGCAGGAACAAGCTCCAATCCATGTCTGCAAAGTATGTCACCTAGTCTTTCAATCACCCAAAACGCTACGTATGCACCAGAAAAGAAAACACAAGTCCTTCAGAAAATCATTCAAACACATTTGCGACTACTGCAGTATGTCCTATGAAATGAAGAACAGTTTAGTTGCTCACATAAAGAGGAAACACGGACCTAATTCAATGCCTGACGACCGAGAAGAGAGGACTTGTGAGATATGTGCACTGGTGTTTAAAGGTATGACTCGGTTACGAATGCACATGAGGAGAAAACATGGGTCCTTCCAGGAATCGTTCCAACATGTTTGCCAAGACTGCGGTTTAACTTATGATAAGTACAGAAGTTTGATAGTACATATACAACGTAAACATTCTAATGAAAATAAGAAGCCTGAAATCAACCAATGGTACAATTGCCCATTCTGTCCTAAGATTTTTACAAAACGGGAGACTTACGCTAGACATGTGCAAAGAAAGCACCATGTGTCTGACGATAGTATTAAGCAGGAAACATTAACTGATAATTATTTGGAGAGTTGTAAGAATGAGGAAACTGGTGAAATTTCTTGTAAGGAGTGCCCTCTAGTCTTTTCCTCAGTCAATTTCCTGAAACTGCACATGAGAAGGAAACATAATGCGTTACGAGATGATTTTAGATTGAAATGTAGGATTTGTAACTTATCTTATGATAAGGTTGAGAGCCTGAAAAGGCATGTGAGAAGAAAACACGACAAATGTTCGTATTGTGAAGTTTGCAATAAACAATTTGATACACGAGAAATGTATCTTAACCATTCACATATAAAAGTGATAAAGGAGTGTAATATCTGCGGATTGATTTTCGCGTCTCAGGGCGGCTTAGCGAAACATTTGAGGTGTACACATAAATTAGATTCACCCAAAACAGTGTTCTGCAATCTGTGTAACGAGGGTTTTTACGACAAACGCCAATTAAAACCACATTTCATGAAAGTGCATTTAAAAGTGTCTTACACTTGTCGATACTGTAAAAAGGTTTTCAAAGCGAAGGAGAGCTATCGACGTCACATATTATTCAAACACCCCACAGTAAACCCTTTTAATGCTCAAATGCAAAAATGCGAGCAATGTAATGAGACGTTTAAAGACGAATTTGAGCTTTGTCGACATGTAAATATAGTCCACGGTCGCCCGGGAGATATGACTAAACAAGAGAAAGAAATGTTAGAAATTAAGAAAGAAGATGCAGATGTAAAAGATCGTTTTCAATGTACTAAGTGTACGGACACATACTTAACATGGGAACAATTAAAGCTACATTACGAAGCAAATCATCACAACATTGAAGAAACTCAGTGTCAAATTTGTGGAGAAATACTCCCAGGAAATGAATTACAAAAGCATATAAAAACTCTGCACACAGATAATGATATGCACTGTAGATATTGTGAATTTAAGACAACTATTAGAGTTAGTTTGACGCAACATATGTTGAGGCATAAAAACGCTGAGACCATTCACTGTGATTACACCGGTTGCAAGTATAAAACGTTCTATGAAGGTGCTATGGAAAAACATAAGAGGAAACATGCCGATCAGGGAGTCAAACTCCAATGTACGCAGTGTCCGTTCCAATCTATGAATAAGTACATATTAAAGTATCATATGGAGGCCCATGAAACTGGGAAGAAAAGATACATGTGTGATCAATGTGATTATGCAACAATACTGCCAGCTAATTTAGTGCAACATAAGTATAAGCATTCTACGGAGAAACGGTTCAAATGTGAAGTTTGTCCATTTGCTACCAAGTACAACACATCACTTCGGTTCCATGTAAGGAAAAAACACTGTGATCTCCCTACGTTCAGTTAA
- Protein Sequence
- MEVDIKIKIEDDVRKDPTSFLPEEPMSYEIKRKKKKKKKLQEDPFKDIDDKMEVKIEPVTLLDPEVKIKVENIDVELDFNDFTDNGELMLQGPQSEESQEPVVKIEQQSHEAVLLTFESVINNKAIIKKDELFPNSDLPQEQAPIHVCKVCHLVFQSPKTLRMHQKRKHKSFRKSFKHICDYCSMSYEMKNSLVAHIKRKHGPNSMPDDREERTCEICALVFKGMTRLRMHMRRKHGSFQESFQHVCQDCGLTYDKYRSLIVHIQRKHSNENKKPEINQWYNCPFCPKIFTKRETYARHVQRKHHVSDDSIKQETLTDNYLESCKNEETGEISCKECPLVFSSVNFLKLHMRRKHNALRDDFRLKCRICNLSYDKVESLKRHVRRKHDKCSYCEVCNKQFDTREMYLNHSHIKVIKECNICGLIFASQGGLAKHLRCTHKLDSPKTVFCNLCNEGFYDKRQLKPHFMKVHLKVSYTCRYCKKVFKAKESYRRHILFKHPTVNPFNAQMQKCEQCNETFKDEFELCRHVNIVHGRPGDMTKQEKEMLEIKKEDADVKDRFQCTKCTDTYLTWEQLKLHYEANHHNIEETQCQICGEILPGNELQKHIKTLHTDNDMHCRYCEFKTTIRVSLTQHMLRHKNAETIHCDYTGCKYKTFYEGAMEKHKRKHADQGVKLQCTQCPFQSMNKYILKYHMEAHETGKKRYMCDQCDYATILPANLVQHKYKHSTEKRFKCEVCPFATKYNTSLRFHVRKKHCDLPTFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00327297;
- 90% Identity
- -
- 80% Identity
- -