Apsi015553.1
Basic Information
- Insect
- Acronicta psi
- Gene Symbol
- -
- Assembly
- GCA_946251945.1
- Location
- CAMIUM010000059.1:182667-190469[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 4.3 2.7e+02 2.6 0.1 1 23 85 108 85 108 0.89 2 20 0.47 29 5.6 0.2 3 23 113 133 111 133 0.95 3 20 0.0079 0.49 11.2 0.1 2 23 137 159 136 159 0.94 4 20 0.0025 0.15 12.8 1.0 2 23 390 412 389 412 0.95 5 20 0.033 2 9.2 0.1 1 20 420 439 420 441 0.95 6 20 0.0078 0.48 11.2 0.3 2 23 451 472 450 472 0.94 7 20 8.5 5.2e+02 1.6 1.5 1 23 488 511 488 511 0.84 8 20 0.00081 0.05 14.3 1.4 1 23 520 543 520 543 0.95 9 20 9.6 5.9e+02 1.5 1.3 8 23 593 609 585 609 0.88 10 20 1.7 1.1e+02 3.8 0.2 2 23 628 650 628 650 0.83 11 20 4.1 2.5e+02 2.6 1.9 1 23 655 678 655 678 0.93 12 20 5.3e-05 0.0033 18.0 1.8 1 23 684 706 684 706 0.96 13 20 0.00023 0.014 16.0 1.8 1 23 713 735 713 735 0.98 14 20 9e-05 0.0055 17.3 2.3 1 23 740 762 740 762 0.96 15 20 0.00015 0.0093 16.6 1.4 1 23 768 790 768 790 0.98 16 20 4.2e-07 2.6e-05 24.6 1.7 1 23 796 818 796 818 0.98 17 20 0.00062 0.038 14.6 2.5 2 23 825 846 825 846 0.97 18 20 0.0025 0.15 12.8 0.5 2 23 854 876 853 876 0.97 19 20 6.1e-05 0.0038 17.8 0.7 1 23 881 903 881 903 0.96 20 20 0.0024 0.15 12.8 1.9 2 23 910 932 909 932 0.96
Sequence Information
- Coding Sequence
- ATGTCTTCAGATGAGTCGGACGATGAACCGTTGTCCGTAATAGCGGCAAACAAGAAATTAAATCCCGGAAAGTATGGAGGTGAAGCATCAGATTCCATAGAAGTTCCAAAAAAGAAAAAGAAGTTACCAGCTCCTAAACGGCTTCCTGTCACGATAAAGCTTCAACGCGGTAGGGCTAGCAAGCAGCAGCCAGTGATCAAGCGGCCTGCAGACGTGTGGCTCTATTTAAAAGATCTGAACCCTTCAGGACCATACAGTTGCTTGTTGTGCCCAGAATGGTTTATCAACAGATCAAAAATTATTGTGCACTATGTCTTAAACCACAAGAAAGACTTCTGTGGTATATGTAGGTATTTTGTTCCCGACAGAGATAGCTGGTGGAAACATGTAAAGTTTCATACTCCTTGGCCGTGCTCTCAATGTGTTCAAAACTTTGAAACTGAGGTAGAACTGCGCAACCATTTGAGAGCTATTCATAATCTGGTACATTGTAGACTCTGCCATTTCAGAGTTCTTGATGGTGACCCATACCACACACATTTATTTCAAAAGCATAATATCACTAATGTGGCCAGTAAAGATGACGAAAATTTGTGGGAATTACTATATGATGGCACTTCAAACTTCTTGTGTTTGCTTTGCTCTAAGTCTAATAATCCGACTAGAATGTTCTTCAACCATTACATGGGGTATCACCACTTCACACTGAAATGCTTCACTGGTCTTGTCTCAGGAAGAGATCCACCATTCTTAGTATATGGTGCTGATCTTAGAACTGAATTTGTTGAAGAACAATTGAAGCAACATTCAAGATATGGCTACGTTGATGCTGGGTTCCAGTCTCAGGGTGCCATAGAACCTGAACAGAGTGATACAAAAGATTTGTTGAAAGTTCTTATACCAGAAATTAAACAAGAAATTTTAAATATAGAGGAAGCTAAGAATGTTGAAGAAGCTGCAAAATCAAAGGATGATGATGATGATGATGTCTATAAAAACTATAATGGTGATGATGATTTTGATGTAACATCAACAGAACTCATAGTTGTACAAAAATGTTATTATGATTACATACGTGAAATTTTGTCTGACATCAATTCCAAATCATTTTATGAATACTCTGACATTGATTATGACAAGGCTACAACTGAGGTTGCAATGGATATAGTTTGCACCCTGTGCAGTATCCGCTACAGCACTTTGTCAAGTTTCACTACACACATGTTTAAGATGCATTGTATAAAGTCCTTGCCACTGTTTTCATGCAGAGTGTGTGCAACAACATTTGAAACCCAAAATGAGTTGGACAATCATATAACAAATGAGTTAGGAGACTTTGACGATCTATGGATTTGCCAGTTTTGTGATAAGGAATTTGATGACAGGGAGGCAACAAGGCGTCACTTAACAGAACATTGGGATGTAGTAGAATATGATAACTGTTTCAGTCCACATTTGGGCTTCAAATGTAGATATTGTCCAACATTGTTCTGGCATGAAACAGACAGGGAGACACACCAAGTCCGGGCCCATTTCTTCAACCATAAAGATGGGTATTACAAGTGTGAGAGCTGCAATGAAGTATTCAGCGACAAGGTCTGGTTCATCCATCACTATTTAGAAAGGCACAGTACTCCAGATAAAGTGCCTTTGTATTTGCTCAAATGTTCTCTTTGCTGCCTGGTGCTGCCCAATGTTGAGGAGATGAGGGCCCACTTCAACAGCCTTCACCCTGAAGCTAGGAAGGTGTTCTGCTCTTTAGACTCCTGCCAATACAAGCCTTTGAGTCATCGGAAGTCCTTTAAACTTCATGTGCGGACGATGCACACGTCGCGGTCGCGGTCGCGGGCGCGCGCGCACGCGGCGGGCGCGGGCGGCGCGGAGTGCGCGCAGTGCGGCCGCGAGTTCGGCAGCTCGCGCGCGTGCGGCGCGCACATGGCGCAGGCGCACGGGCCCGGCAAGTTCAAGTGCAAGCTGTGCCGCGAGGTGCTGCACACCATGGACGAGAGGAAACTCCACTACCTCATCAGCCATCCTGGACAGCATCCGTTCGAGTGCTCAGAGTGTGGCAAATCATTCCAGTATAAATCCTCGCTGTACATGCACAAGCAAGACCATCAGCCCAACAAGCAGAACTACACTTGCACATATTGTGGGAAGACCtttttgAAGCGCGACTCGTTCCGCGAGCACGTGCAGATCCACGAGGGCCCGCGGCACGCGTGCTCGTACTGCCCGATGCGCTTCGTGCAGCGCTCCAACATGCTGCGCCACGAGCGCCGCCACACGGGCGAGCGGCCCTACGTGTGCCCGCACTGCCCCCGGAGCTTCGCCGACAAGGGCGCCTGCAACTCGCATGCCAGGACACATTTGAAGAACGTGTCATATGCGTGTATGTACTGCGGGAAGTCATTCGTGCAGAAGTCCAAGTTGACCTACCACATCAGGAAACATACCGGAGAAAACCTGGAGACGTGCTCGGTGTGCTCCAAGTTGTTCACGAGCGCTTGCTCGCTGCGTGAACACATGAAGATACATGAACCTAAGAAGGAACAGATTAAATGTCCACTGTGTGAGCGCATGTACCAGGACGAGCGCTACATGCTGCGGCACCTGCGCACGTCGCACACGCACGCGCGCCACGCCTGCCCGCTGTGCGACAAGATGCTCACGAGCCCGTCCGGCCTGCGCCACCACGTCATCACGCACAGCAACCTCAAGACGCTACGGTGCAAAATGTGTCCAAAAGCGTACTCAGTGAAGAGGACGATGATCAAACATTTCAGGCGTCGACACGGCTTCAAAGGCAATGAACCGAACATTAAAGAGTTCTACAGTAGGCTGGACCCGAGGGAGTGTAATCTAGGCATAGAAGAACCAACCATGACCACTATATTCGGACCCCCGAACAAACCAATTATGACTGATGTCCTAGTTGCTAACTTTGTTGCTCTATCTAATCTAGAAAAACAGAGGCGACTAGCAGAACAGAGAGAAGAGAGTGAGAGTACAGAAGATGCACAGTATGACAAGTCACAGTCAGATGAGATGTCAAGGACGAGTGAAAAAGACACAGATAGTGCCGAAAGAGATGAAAAGAAAATTATCATCAAAGTGGAGGCTAAAGAAGAGGGCGATCACGATTCAGAGCTGGAACCCACTGACTTTGTCAGCGTCAAGATTGAACCAATGGATGATGAGAATGAAAATGAAGACTAA
- Protein Sequence
- MSSDESDDEPLSVIAANKKLNPGKYGGEASDSIEVPKKKKKLPAPKRLPVTIKLQRGRASKQQPVIKRPADVWLYLKDLNPSGPYSCLLCPEWFINRSKIIVHYVLNHKKDFCGICRYFVPDRDSWWKHVKFHTPWPCSQCVQNFETEVELRNHLRAIHNLVHCRLCHFRVLDGDPYHTHLFQKHNITNVASKDDENLWELLYDGTSNFLCLLCSKSNNPTRMFFNHYMGYHHFTLKCFTGLVSGRDPPFLVYGADLRTEFVEEQLKQHSRYGYVDAGFQSQGAIEPEQSDTKDLLKVLIPEIKQEILNIEEAKNVEEAAKSKDDDDDDVYKNYNGDDDFDVTSTELIVVQKCYYDYIREILSDINSKSFYEYSDIDYDKATTEVAMDIVCTLCSIRYSTLSSFTTHMFKMHCIKSLPLFSCRVCATTFETQNELDNHITNELGDFDDLWICQFCDKEFDDREATRRHLTEHWDVVEYDNCFSPHLGFKCRYCPTLFWHETDRETHQVRAHFFNHKDGYYKCESCNEVFSDKVWFIHHYLERHSTPDKVPLYLLKCSLCCLVLPNVEEMRAHFNSLHPEARKVFCSLDSCQYKPLSHRKSFKLHVRTMHTSRSRSRARAHAAGAGGAECAQCGREFGSSRACGAHMAQAHGPGKFKCKLCREVLHTMDERKLHYLISHPGQHPFECSECGKSFQYKSSLYMHKQDHQPNKQNYTCTYCGKTFLKRDSFREHVQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYVCPHCPRSFADKGACNSHARTHLKNVSYACMYCGKSFVQKSKLTYHIRKHTGENLETCSVCSKLFTSACSLREHMKIHEPKKEQIKCPLCERMYQDERYMLRHLRTSHTHARHACPLCDKMLTSPSGLRHHVITHSNLKTLRCKMCPKAYSVKRTMIKHFRRRHGFKGNEPNIKEFYSRLDPRECNLGIEEPTMTTIFGPPNKPIMTDVLVANFVALSNLEKQRRLAEQREESESTEDAQYDKSQSDEMSRTSEKDTDSAERDEKKIIIKVEAKEEGDHDSELEPTDFVSVKIEPMDDENENED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00758517;
- 90% Identity
- -
- 80% Identity
- -