Apsi016912.1
Basic Information
- Insect
- Acronicta psi
- Gene Symbol
- -
- Assembly
- GCA_946251945.1
- Location
- CAMIUM010000066.1:2258883-2271603[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.058 3.6 8.4 1.1 1 23 223 245 223 245 0.97 2 12 0.0021 0.13 13.0 3.7 1 23 252 275 252 275 0.96 3 12 0.37 23 5.9 1.3 1 19 279 297 279 301 0.86 4 12 0.0004 0.025 15.3 4.7 1 23 306 329 306 329 0.98 5 12 9.8e-05 0.0061 17.2 2.0 1 23 333 356 333 356 0.96 6 12 0.024 1.5 9.6 0.1 3 21 377 395 376 396 0.94 7 12 0.00043 0.026 15.2 0.2 2 23 409 430 408 430 0.97 8 12 0.0002 0.013 16.2 0.7 2 23 450 472 449 472 0.96 9 12 6.2e-06 0.00038 20.9 1.9 2 23 482 503 481 503 0.97 10 12 4.9e-05 0.0031 18.1 3.4 1 23 509 531 509 531 0.98 11 12 5.1e-08 3.2e-06 27.5 0.6 1 23 537 559 537 559 0.98 12 12 3.3e-06 0.0002 21.8 2.2 1 23 565 588 565 588 0.98
Sequence Information
- Coding Sequence
- ATGGAAAAGTTATCCATGTGTCGAGTATGTTTGATGCAGAATGTTCGCATGTGTGTAGTTACCAGCAGACATTTACAGGATGTTTATGAGAAACTAACAAATATTCCGTTTATAACTGAAGACAGTAGGCCGATGTTAGCATGTACCTACTGCTACGCAAGACTGAAGCAATGTTACATATTTCTGAAGAAATGTTTACACGCTGAGGACCTGCTTGCGAAGATATTAATTGATTATGAGCAGAAACCTATAAAAATTCAAGAGGATATCTTTGGTGGTTTCATTACAACGTCAATTCAACATCTAAGTATTGTCGACGACAGTCAACCAGATGGCAGCACTGTCAAAGAAGAATTGTTATCAACAGATAGAACCTATGAAGTTGTTCTTAAAGAAGAACCTCAAAGCGATGTTTTAGAACCAGAACTCGAAGAACATGCTTATCCTGAAGAGAACAACCACTCCCAATCAGATTCCGAAGACGATATACCACTGACGAAGATAAAAATTGAAGTGGATGGAGTTAAGGAGACGTTGAAGAAGAAGGGGAGAGTCAAGAGGAAATACGGCAGAAAACTAAATGCCAGTGAGATTATTCTCACAAAGGAACAACAGTTGGAGAACTTAGAAGCCAGGTCAAAATCTGCTAACTACACAAATTGCCCTTTTAAATGCGCATTGTGTTACAAAGGATTTATTGATATGAGAGCTTATTACAACCACAAGATTAAACATGAAACGCGTAGCGGTGCGCATGTGTGCGATATATGTCGCATGCACTATCGCACGGCGCAGCACTTGCGCACGCACGTCATCACCGCGCATGCGCGCATATTCAAGTGCAACAAGTGCGGACATACGTCACAAACTGCTAATCAAGCAAGGATACATGATAAGTGGCACAACGGGCACACTTATGAGTGTCAACTTTGTAGTCATAGTTTTAGTAAACCTACGTCATACTTCTCTCACATGCGCAAGCGACATCCTACGGAGCATGTGTGCAATATCTGCGGCGAAAGCTTTGTGGGCAAACACGGACTGAAGATGCACAAGAGATTGACACATATTAATGATGATAAGGTGGAAGAGCAAGAAGACCCTGAACACCCGGCTACTGATAGGTTCTGCAGTGAATGTAACATACAATTCGTCAGTCTAGAGGCGTGGAAGAGGCACATACTATATTCCATCAAACATACTCTTAAGAGTGAACAAAGTTCTCAATGCAGTATATGCTCGTGGCGTTTCGTCGGCAACGTGACCTTAGCGACTCATATGAAGGAACACGCGAAAACATTGAGAAAGTCTAAAAAGCAGACGTTGGTCGTCAGCGACCGCCATCTTAGATGTTCACAGTGCGGCTCAAACTTTGTAAATATGTCTAAACTTCAAGCACACATCAAAAGAACTCACCTAGGACTGAAATATAACAAGAATATTGTGTGTGAAGTGTGCGGGAAGAAATGTACTTCAAACGCGACATTGAAGTACCACCAGCGCACCCACACGGGCGAGAAGCCCTACTCCTGCGCATCATGTTCTAAGCACTTCTCTGACAGCAACCAGCTGCGCATACACACGCGCACGCACACGGGCGAGAAGCCGTATGTGTGTACCGTGTGCGGCAAGAGATTCACACAGAAACCTGCGCTTAACCGACATTATAGAGTACACACAGGCGTCAAACCGTACACCTGCCAGTATTGTTCCAGAACGTTTAGTCAGTCGAACTCTTTGAAATTGCACGTGAAAACTGTACACTTGAAACAGCCAGCCAATAGTCGGAAGAAAGCGCTGAATACATCACAAGATATTAAAATTACTGAGAAGAATGAACAGGAACTACATACCGTTACTATAGCTTTAAATTGA
- Protein Sequence
- MEKLSMCRVCLMQNVRMCVVTSRHLQDVYEKLTNIPFITEDSRPMLACTYCYARLKQCYIFLKKCLHAEDLLAKILIDYEQKPIKIQEDIFGGFITTSIQHLSIVDDSQPDGSTVKEELLSTDRTYEVVLKEEPQSDVLEPELEEHAYPEENNHSQSDSEDDIPLTKIKIEVDGVKETLKKKGRVKRKYGRKLNASEIILTKEQQLENLEARSKSANYTNCPFKCALCYKGFIDMRAYYNHKIKHETRSGAHVCDICRMHYRTAQHLRTHVITAHARIFKCNKCGHTSQTANQARIHDKWHNGHTYECQLCSHSFSKPTSYFSHMRKRHPTEHVCNICGESFVGKHGLKMHKRLTHINDDKVEEQEDPEHPATDRFCSECNIQFVSLEAWKRHILYSIKHTLKSEQSSQCSICSWRFVGNVTLATHMKEHAKTLRKSKKQTLVVSDRHLRCSQCGSNFVNMSKLQAHIKRTHLGLKYNKNIVCEVCGKKCTSNATLKYHQRTHTGEKPYSCASCSKHFSDSNQLRIHTRTHTGEKPYVCTVCGKRFTQKPALNRHYRVHTGVKPYTCQYCSRTFSQSNSLKLHVKTVHLKQPANSRKKALNTSQDIKITEKNEQELHTVTIALN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00017560;
- 90% Identity
- -
- 80% Identity
- -