Apsi016624.1
Basic Information
- Insect
- Acronicta psi
- Gene Symbol
- -
- Assembly
- GCA_946251945.1
- Location
- CAMIUM010000064.1:2168457-2173941[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00021 0.013 16.1 0.6 1 23 58 80 58 80 0.94 2 15 0.00069 0.043 14.5 2.9 1 23 101 123 101 123 0.95 3 15 0.00016 0.0098 16.5 0.2 1 23 147 169 147 169 0.94 4 15 0.058 3.6 8.4 0.1 5 23 177 196 175 196 0.95 5 15 3.1 1.9e+02 3.0 4.5 1 23 278 300 278 300 0.96 6 15 2.2e-06 0.00014 22.3 0.2 1 23 306 328 306 328 0.96 7 15 0.0013 0.077 13.7 2.3 1 23 334 356 334 356 0.96 8 15 1.1e-05 0.00066 20.2 0.4 1 23 362 384 362 384 0.97 9 15 7e-07 4.3e-05 23.9 0.2 1 23 390 412 390 412 0.98 10 15 2.9e-05 0.0018 18.8 2.2 2 23 419 440 418 440 0.97 11 15 4.4e-05 0.0027 18.3 0.7 3 23 448 468 446 468 0.97 12 15 0.00073 0.045 14.4 0.1 1 23 474 497 474 497 0.94 13 15 0.002 0.12 13.1 3.0 1 23 512 535 512 535 0.96 14 15 0.0054 0.33 11.7 0.2 2 20 539 557 538 559 0.94 15 15 3.6 2.3e+02 2.8 1.7 2 10 563 571 563 585 0.78
Sequence Information
- Coding Sequence
- ATGTATCCGCAATGTAAACACTGGCTCCTCAACATCCAACAATGGGCTAGGATAAGGAATGTAGAGGATCTGTTCAGACTGGTTCTGAACAAAGAAGAATTTAAGAGGATGATGAAGAAAAGAGAAGGCATAGAACCAGAATTGTTGGTGAAAGTGGAAAAATTGAAGGTATACAAATGCGAAAGATGCCCAAAAGTATTTCCAAAACTTAGTGACCTGGTGGAACACAAGACTTTTCATGACAACTGGTTGTTATCTCATACTCTTAGTGCTTATGTATCTGTAGAGAGGGCCAAAATATTCAAATGTGACATTTGTACCCTAAGTTTCTGCACTAGAAGAGAGCTTATGCTACATAAATTGGATCACATACAGAAGAATGTGAGGGACAATAGAAAAGCTAAAAGGTTTCCAACTAACAATGACATTGTCAAACCCTACAAATGTCCAGACTGTGATTATAGATTTGTTGCACTTAGCACCCTGACTGAACATTCAATACTTCACAAGCCGTTCCCCTACGACTGTGAGTGTGGCATTGGATATTACAAGCTAAATGATCTAAAAATGCATATGAGGCTGGTACATGGAACTGAGCTTAAGCCCAACATTACAGTACCAAGTATTGCAGAAAAAGAGAATATTGTTGACCGTAAAACAAATTCAAACAGAGGACCAAGTCTAAAGGCTGTTTTAGTTAAGAAAAAACCAGCAAAAAAGAAATGGAAGGTCAAAATGAAAGATCAGAATGGTGAAAGTGAAGAACCACAACCCAAACGGCGTATCATAGAAAAACCAAATATAGATATCAGGAAGACCTCCGATAATAAGTATGAGTGTCCGCAGTGTAAGAAATTGCTCAGTTGTAAAAACCATGTCTATATACATTACCGCATCCACACTGGTGAGAGGCCATATACTTGTGAAGTATGTGGGAAATCATTCACCCAGTTCGGTGCACTTAAGGTCCACAGGGAAGCCCACCTACCTGGGAACAACTATGCATGTCGGTACTGTGACAAAACTTTTAAAAAATTGGTTTATAGGACACGTCATGAAGATACTCATAGTGCAGTTAAGAAGCATGTATGTCCAATCTGTGGAAAGGGTTTCCATGATCCATCAGCCAAGATTCGCCATGTACGAATCCACACTGGTGACAAACGATACACCTGCCCCTACTGCCCAAAAGCATTCACCGACAAAAGTGGCCTTATAGGACATAAAATGCGTCACGAAAAAATTAAAAAAGTTAAATGTCAGCATTGTTCTATGAAATTTTATACTAAGGACAATCTTGTAAAACATATGGTAGTGCACACGAAGGAGCGAAAGTATGGGTGTGACATTTGCAAAAAGTTTTTCTCTCTAAAATCAAATTTATCTTTACATATTAAAGCACATAGTGTATTTAGACAGTACAAGTGTGATCTGTGTCCGGCCCAGTTTGTGAAGTCACCATATCTAAAACGACATGTTTTAGAGGTCCATCAAAATGTAAAACGTCGTTCATCTAACAAGAAAAAGCAGGTATTTGAATGTGATAATTGTTCGCAACAGTTTTCTCGCAAGTTAAGATTAAAAAGACACTATTTGAGCAAACATTCAGGCGTACGCTGTAAGTTTTGCCCAGAGTATTTTCCGAGTCAAAGAGATTTAAGGGAACACCGTCTGGAGAAGAGTGAATCATGTGAAATATGTGACAAAGAATTCTTTTGTGTTAAATTGAAAGATAAGCATATTTTAAAAGTCCACAGTAAAGTTAAAAGGGAGGAATGA
- Protein Sequence
- MYPQCKHWLLNIQQWARIRNVEDLFRLVLNKEEFKRMMKKREGIEPELLVKVEKLKVYKCERCPKVFPKLSDLVEHKTFHDNWLLSHTLSAYVSVERAKIFKCDICTLSFCTRRELMLHKLDHIQKNVRDNRKAKRFPTNNDIVKPYKCPDCDYRFVALSTLTEHSILHKPFPYDCECGIGYYKLNDLKMHMRLVHGTELKPNITVPSIAEKENIVDRKTNSNRGPSLKAVLVKKKPAKKKWKVKMKDQNGESEEPQPKRRIIEKPNIDIRKTSDNKYECPQCKKLLSCKNHVYIHYRIHTGERPYTCEVCGKSFTQFGALKVHREAHLPGNNYACRYCDKTFKKLVYRTRHEDTHSAVKKHVCPICGKGFHDPSAKIRHVRIHTGDKRYTCPYCPKAFTDKSGLIGHKMRHEKIKKVKCQHCSMKFYTKDNLVKHMVVHTKERKYGCDICKKFFSLKSNLSLHIKAHSVFRQYKCDLCPAQFVKSPYLKRHVLEVHQNVKRRSSNKKKQVFECDNCSQQFSRKLRLKRHYLSKHSGVRCKFCPEYFPSQRDLREHRLEKSESCEICDKEFFCVKLKDKHILKVHSKVKREE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -