Apsi016967.1
Basic Information
- Insect
- Acronicta psi
- Gene Symbol
- Kr
- Assembly
- GCA_946251945.1
- Location
- CAMIUM010000066.1:3142026-3178355[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 0.0003 0.018 15.7 7.1 1 23 347 369 347 369 0.98 2 29 0.29 18 6.2 0.8 1 23 376 398 376 398 0.96 3 29 0.84 52 4.8 0.2 1 23 402 425 402 425 0.97 4 29 0.17 11 7.0 7.2 1 23 432 454 432 455 0.96 5 29 2.7e-06 0.00017 22.1 0.4 2 23 461 482 461 482 0.98 6 29 5.3e-05 0.0033 18.0 4.2 1 23 488 510 488 510 0.98 7 29 0.00091 0.056 14.1 1.7 1 22 516 537 516 541 0.93 8 29 0.00058 0.036 14.7 3.6 1 23 549 572 549 572 0.97 9 29 0.0086 0.53 11.1 0.1 1 23 578 601 578 601 0.94 10 29 0.56 35 5.3 0.4 1 15 610 624 610 629 0.81 11 29 0.21 13 6.7 0.0 4 23 636 656 636 656 0.94 12 29 0.56 35 5.3 0.4 1 15 665 679 665 684 0.81 13 29 0.21 13 6.7 0.0 4 23 691 711 691 711 0.94 14 29 1.8 1.1e+02 3.8 0.4 1 15 720 734 720 739 0.81 15 29 0.21 13 6.7 0.0 4 23 746 766 746 766 0.94 16 29 0.56 35 5.3 0.4 1 15 775 789 775 794 0.81 17 29 0.21 13 6.7 0.0 4 23 801 821 801 821 0.94 18 29 0.56 35 5.3 0.4 1 15 830 844 830 849 0.81 19 29 0.21 13 6.7 0.0 4 23 856 876 856 876 0.94 20 29 0.56 35 5.3 0.4 1 15 885 899 885 904 0.81 21 29 0.21 13 6.7 0.0 4 23 911 931 911 931 0.94 22 29 0.56 35 5.3 0.4 1 15 940 954 940 959 0.81 23 29 0.21 13 6.7 0.0 4 23 966 986 966 986 0.94 24 29 1.7 1.1e+02 3.8 0.6 1 15 995 1009 995 1014 0.81 25 29 0.21 13 6.7 0.0 4 23 1021 1041 1021 1041 0.94 26 29 1.7 1.1e+02 3.8 0.6 1 15 1050 1064 1050 1069 0.81 27 29 0.21 13 6.7 0.0 4 23 1076 1096 1076 1096 0.94 28 29 0.56 35 5.3 0.4 1 15 1105 1119 1105 1124 0.81 29 29 1.4e-05 0.00085 19.9 0.4 1 23 1176 1199 1176 1199 0.96
Sequence Information
- Coding Sequence
- ATGGAAACAATGAGTTTGGGTGATGTGGAAGATGTAAAACATAATATTGAACAAATAGAAGAAACGAAAACAATATGTAGGTGCTGTTTAACGACAGGAAAACGGGTTTACAACGCCGTATACTTCGAAGCGTTTTTTAAAGATTTGACCGGCATTAACGTGCTAGAGTCGGATGCTCTGCCGCAGTGGATATGTATTGAATGCGCTACACTCTTACAGAAAGCTGTACGGTTTAAACACAAAATGTTAAGAGCTCACAGCGTACTGTACGAATACCTTACCCGATGTGCTCCTTTTCCGCTTGACGCTCAGGATGAGGAGTTGTCGAAGTATGCCAGTCCCCAACTCGGCGCCACCAACATACTCTGTATTGACAGCCTGACCAAAGTGAAACTTGGATATCTTTACGTTTTTGAGCACGAAAACCCCGTGCAGCCTTCCTTGTTGGACAACGTGGCCTTGCCCCAACTCGGCAAGGTTGAGGAAGACGTGAAGGACGAGACCACATTCACGGATTATGACGATAATATAAGTTTTGATGAtattaaGTCTGTAGCTACAAAGATTACGGAGGATGATATAGCCTCGATGCTGCAAGACACCGCTCCAGTGGAATTGGAAGTCAAAACAGAAGTCAAGAAGAAGAAGAAAAGTAAAACTAAAGAAGCTAAAGTCAAGAAGAAAAAAGATTGTTTGAGGGAATATTCCTCTTGCTGCCAGCGCAGCGTATCCTTAGAAGGAGCTTTGGCGACTAGGTTAGTTATAGTCCGCGCGGAACTAGTTGGCCGCGCCTTAGGTAGGGGCGGGAGTGAGGCGGCGGATTACTGTGATCAAAAGCAAGCGCCCCCGCCCCTCCGCCCCACCGCGCGCAGTGAAACGCCTCCAGAGGATGAGCCTGAAGCTGTTCCTGCCCCCACAAAGTCTTCGATTAGGAAACCAGTAGAATTAGACCCGAATAAGATTAGAATTGTAGTGTTAAACCCAGAAGAACAGATAAAACAAAGAGAGGAGGAAAGCAAGGCTGGGTTAAAGTTCCCGTTTAAGTGTCATCTATGCCATAAAGGGTTCAACTTTGAGTCTAAATTACAAAATCATATGAGCAAGCATAGTCCATCGCGCGGCCCGTTCGAGTGCACGCTGTGCCACATGTACCTGCCGACGGCGTACAGCTACAACGTGCACTCGCTCATACACAACCGTCGCTACGAGTGCGTGCAGTGCAACCGGCGCATGATCGACCGCGCCAGCATCGTGGACCACTACCGGTCACAACACGAAGGATTATTAACACTCTACACTTGTCATCTATGTGGAAAAGTTTCGAACAACAATAAAACTCACAAAGGTCACATGCGGAATCACCACAGCGGCGACAGGCCGAAGTGTGACCAGTGCGGGAAGACTTTCATCAACAAGGACTCTTTAGCCGACCACCAGCAAATACACCAAGGCATCAAGAATTACGAGTGTAACCAGTGCGGGAAGCGGTTCAGGACGCGGACACAAGTGAAGCTCCACCACTTGACGCACACCGACGCGAAGGACTTCTATTGTGTCGAGTGTGATGTGAGGTTTAAGTCGGCGCATAGTCTCCAACAGCATCTACAGAAGAGTCTCAAACACAAAGATAAGCAGAGCTTCCAGTACTCGTGCTCGCGCTGCGATAAGCGGTTCGAGCACGCGCGCGCGCTGCACGTGCACACGCGCGTGCAGCACGACGGCCTGCGCGCGCACGCCTGCGCCGACTGCGGCGCCGCGCTCGCCTCGCGCGCCTCGCTCAACAAGCACGCGCGGCAGGTGCACCGCGGGGCACGCCCGCCGCCGCGCCACGTGTGCGACACCTGCGGCAAGCTGTTCCGGGTGAGTACACACGGCGCGAGGCACGTGCCCCCGGCGGCACGCCTGCCCGACTGCGGCGCCGCGCTCGCCTCGCGCGCCTCGCTCAACAAGCACGCGCGGCAGGTGCACCGCGGGGCACGCCCGCCGCCGCGCCACGTGTGCGACACCTGCGGCAAGCTGTTCCGGGTGAGTACACACGGCGCGAGGCACGTGCCCCCGGCGGCACGCCTGCCCGACTGCGGCGCCGCGCTCGCCTCGCGCGCCTCGCTCAACAAGCACGCGCGGCAGGTGCACCGCGGGGCACGCCCGCCGCCGCGCCACGTGTGCGACTCCTGCGGCAAGCTGTTCCGGGTGAGTACACACGGCGCGAGGCACGTGCCCCCGGCGGCACGCCTGCCCGACTGCGGCGCCGCGCTCGCCTCGCGCGCCTCGCTCAACAAGCACGCGCGGCAGGTGCACCGCGGGGCACGCCCGCCGCCGCGCCACGTGTGCGACACCTGCGGCAAGCTGTTCCGGGTGAGTACACACGGCGCGAGGCACGTGCCCCCGGCGGCACGCCTGCCCGACTGCGGCGCCGCGCTCGCCTCGCGCGCCTCGCTCAACAAGCACGCGCGGCAGGTGCACCGCGGGGCACGCCCGCCGCCGCGCCACGTGTGCGACACCTGCGGCAAGCTGTTCCGGGTGAGTACACACGGCGCGAGGCACGTGCCCCCGGCGGCACGCCTGCCCGACTGCGGCGCCGCGCTCGCCTCGCGCGCCTCGCTCAACAAGCACGCGCGGCAGGTGCACCGCGGGGCACGCCCGCCGCCGCGCCACGTGTGCGACACCTGCGGCAAGCTGTTCCGGGTGAGTACACACGGCGCGAGGCACGTGCCCCCGGCGGCACGCCTGCCCGACTGCGGCGCCGCGCTCGCCTCGCGCGCCTCGCTCAACAAGCACGCGCGGCAGGTGCACCGCGGGGCACGCCCGCCGCCGCGCCACGTGTGCGACACCTGCGGCAAGCTGTTCCGGGTGAGTACACACGGCGCGAGGCACGTGCCCCCGGCGGCACGCCTGCCCGACTGCGGCGCCGCGCTCGCCTCGCGCGCCTCGCTCAACAAGCACGCGCGGCAGGTGCACCGCGGGGCACGCCCGCCGCCGCGCCACGTGTGCTACACCTGCGGCAAGCTGTTCCGGGTGAGTACACACGGCGCGAGGCACGTGCCCCCGGCGGCACGCCTGCCCGACTGCGGCGCCGCGCTCGCCTCGCGCGCCTCGCTCAACAAGCACGCGCGGCAGGTGCACCGCGGGGCACGCCCGCCGCCGCGCCACGTGTGCTACACCTGCGGCAAGCTGTTCCGGGTGAGTACACACGGCGCGAGGCACGTGCCCCCGGCGGCACGCCTGCCCGACTGCGGCGCCGCGCTCGCCTCGCGCGCCTCGCTCAACAAGCACGCGCGGCAGGTGCACCGCGGGGCACGCCCGCCGCCGCGCCACGTGTGCGACACCTGCGGCAAGCTGTTCCGGGTGAGTACACACGGCGCGAGGCACGTGCCCCCGGCGGCACGCCTGCCCGCCTGCGGCGCCGCGCTCGCCGAGCTGtatgtacaactctgcctagcccttcggagaatacaggtgtCCACGGTGATGATGGGTAAGAGCGTGCTGACGAACCACGTGCGCACGCACACGGGCGAGAAGCCGTTCGAGTGCGGCGAGTGCGGGCGCCGCTTCTCGCAGCGCTCCGCCATGCGCACGCACGTCAAGCTCGTGCACCTCAAGCTGCGGCGCAGCGCCAAGATTAAACCGGAAGTGCCGCTAGGGGCTCGCTCGCCACCGCTAGAGCTGTTCAAGCCGGAGCCTGCCATCCCGGAGCCCTGGCGACAGCCCTGCGACGTGTACTTCCAGGTCACCGCCGGCCCCTGA
- Protein Sequence
- METMSLGDVEDVKHNIEQIEETKTICRCCLTTGKRVYNAVYFEAFFKDLTGINVLESDALPQWICIECATLLQKAVRFKHKMLRAHSVLYEYLTRCAPFPLDAQDEELSKYASPQLGATNILCIDSLTKVKLGYLYVFEHENPVQPSLLDNVALPQLGKVEEDVKDETTFTDYDDNISFDDIKSVATKITEDDIASMLQDTAPVELEVKTEVKKKKKSKTKEAKVKKKKDCLREYSSCCQRSVSLEGALATRLVIVRAELVGRALGRGGSEAADYCDQKQAPPPLRPTARSETPPEDEPEAVPAPTKSSIRKPVELDPNKIRIVVLNPEEQIKQREEESKAGLKFPFKCHLCHKGFNFESKLQNHMSKHSPSRGPFECTLCHMYLPTAYSYNVHSLIHNRRYECVQCNRRMIDRASIVDHYRSQHEGLLTLYTCHLCGKVSNNNKTHKGHMRNHHSGDRPKCDQCGKTFINKDSLADHQQIHQGIKNYECNQCGKRFRTRTQVKLHHLTHTDAKDFYCVECDVRFKSAHSLQQHLQKSLKHKDKQSFQYSCSRCDKRFEHARALHVHTRVQHDGLRAHACADCGAALASRASLNKHARQVHRGARPPPRHVCDTCGKLFRVSTHGARHVPPAARLPDCGAALASRASLNKHARQVHRGARPPPRHVCDTCGKLFRVSTHGARHVPPAARLPDCGAALASRASLNKHARQVHRGARPPPRHVCDSCGKLFRVSTHGARHVPPAARLPDCGAALASRASLNKHARQVHRGARPPPRHVCDTCGKLFRVSTHGARHVPPAARLPDCGAALASRASLNKHARQVHRGARPPPRHVCDTCGKLFRVSTHGARHVPPAARLPDCGAALASRASLNKHARQVHRGARPPPRHVCDTCGKLFRVSTHGARHVPPAARLPDCGAALASRASLNKHARQVHRGARPPPRHVCDTCGKLFRVSTHGARHVPPAARLPDCGAALASRASLNKHARQVHRGARPPPRHVCYTCGKLFRVSTHGARHVPPAARLPDCGAALASRASLNKHARQVHRGARPPPRHVCYTCGKLFRVSTHGARHVPPAARLPDCGAALASRASLNKHARQVHRGARPPPRHVCDTCGKLFRVSTHGARHVPPAARLPACGAALAELYVQLCLALRRIQVSTVMMGKSVLTNHVRTHTGEKPFECGECGRRFSQRSAMRTHVKLVHLKLRRSAKIKPEVPLGARSPPLELFKPEPAIPEPWRQPCDVYFQVTAGP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -