Apsi015995.2
Basic Information
- Insect
- Acronicta psi
- Gene Symbol
- -
- Assembly
- GCA_946251945.1
- Location
- CAMIUM010000060.1:5777285-5787232[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.5e-06 0.0071 16.2 0.0 7 35 46 73 42 78 0.88 2 2 0.0083 9.1 6.3 0.0 7 34 292 318 289 327 0.87
Sequence Information
- Coding Sequence
- ATGGATCACGGCATTCCGCTAAACATTCACGCGAGACCTCGGCTGGTAGGACGGCGACCGAACGAGATAGTCAATATAGAAACTGATGTATTCCAAGAGAAATCCTACAAGCAATACTCCTCGCAACATCTCCGAGACGCACTCATCGCAGTCAAGAAAGGGTACAGCGTTTACGCAGCATCGAATAAATATGGCGTCCCGAGAAAGACTTTAAGAAATTGGATGGAAAAATACGATATCAAGAGTCAGTTCTCAAAAGGGCGGCGCGGTGCGAGGACTCAAATATTGGATCCGTTAGACCTCATGGTGGAATCGAGGGCGGAGAAGTACGAAGAATCGTTGCTAGTCAAGAGATTGGCAGACACGGTAAAAAAACAATTGCTACGAACTTACGACCGTTTGGAGTGGAGGGTCATCATGATCAACCCATCAACAGTCCCAGGGTCAAGCTATAGTCCACCATGGACCTGCTGGCTACGGATTGGTAGACTTCACACGCCGTCGAGAAAGTCTCTCAGGCATGCAGATTTCCCGATAGCGAACGTGCAGTGCCAGTACGACAGCCCGTCCGACACGGAGCCGGAGCGGCCCGGCGCGGGGGCGCGGCCGCCCGACGACCACACGTACGACACGCGCGACGAGCCGCCCGCCTTCATCATACGACATGTCAACAATGCAATACAGTTACAAAGTCCGCCCCACTACCAGGAGATCAGGCCGAAGATAATGACGATAGGCCCCGGCTCGTCGGCGTCCGTCAACGTCATACACGTCGGGGACCGGCcgcagATGAGCGTGTCGTCGGGCGCGTGCCCGGCGCCGCTGGAGTTCAGCATGAACAAGCGCATCCGGCGCAGCGAGGTGGTGCTGCGCCAGGCCGCCGACTGCGTGCGCCGCGGCCTCACCTTCCAGACCGTCTCCGAGCAGTTCAACATACCCATCTCTACTATACGGTTCTTCATGGCGCGGAAGGGCATCCTGCCGCAGCGACGGCGAGGTCGCAGCACACAGCCAAATCGCCCCTGCAATAGTCCAGAGCCTCCATTCCAAATGCAGCACTTCAAACTACCAGACATGGTCTCTCTGAGGGCGGATGAGGAGGAACCGCCCAGCCAGTAA
- Protein Sequence
- MDHGIPLNIHARPRLVGRRPNEIVNIETDVFQEKSYKQYSSQHLRDALIAVKKGYSVYAASNKYGVPRKTLRNWMEKYDIKSQFSKGRRGARTQILDPLDLMVESRAEKYEESLLVKRLADTVKKQLLRTYDRLEWRVIMINPSTVPGSSYSPPWTCWLRIGRLHTPSRKSLRHADFPIANVQCQYDSPSDTEPERPGAGARPPDDHTYDTRDEPPAFIIRHVNNAIQLQSPPHYQEIRPKIMTIGPGSSASVNVIHVGDRPQMSVSSGACPAPLEFSMNKRIRRSEVVLRQAADCVRRGLTFQTVSEQFNIPISTIRFFMARKGILPQRRRGRSTQPNRPCNSPEPPFQMQHFKLPDMVSLRADEEEPPSQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -