Apsi003107.1
Basic Information
- Insect
- Acronicta psi
- Gene Symbol
- -
- Assembly
- GCA_946251945.1
- Location
- CAMIUM010000011.1:11317801-11322469[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.8e-08 1.9e-05 24.5 0.0 1 40 15 55 15 59 0.85 2 3 9e-06 0.0098 15.8 0.2 1 27 130 156 130 166 0.92 3 3 2.3e-11 2.5e-08 33.7 0.2 1 39 171 209 171 214 0.93
Sequence Information
- Coding Sequence
- ATGGGGATTCCTTCGGAATATGCGCGGAAGCATGGTACGTGGTCAGAAGAAAACTTACGTGCAGCCATGGATGCAGTGAAACAAAGGATATTGTCTCTGCGCGAGGCTGAAGATCGCTATGGCGTGCCCAGACAAACGCTATCCGATCACTTGAAATCTGGAAACATCATGAAGCGTTTGGGAAGACTTTCAATAATGAGCGAAGTACAAGAGGAAGCCTTCGTCAACAGTATAAAACAACTATCGAAGTGCGGAGTTTCTCTGACTCCGAAAATAATTCGAAAACACGCTTTTGATTTCTGCCAAGAAAATAGTATAAAACATAAGTTTAAGAGCTCAGCAGGCCTCGCAGAATGGATTAGATTGCCTATACCGCGAGCTACGTGGACAGAAGAAAACTTACGCGCTGCAATGGCGGCAGTAATTAAGGAGAACATGCCCCAGCGGTCTGCTGCAGATTATTATGGTTCCAGTGAAACATCCTCAAAGCGAAAGCGACAGCCCAGGTGGACAGAGGCAGCCTTACGGGCCGCTGTGGAAGCCGTACAAAGTGGTAAATTGCCCCTGCACATCGCAGCTAGACGCTACGACATCCCGAGACGAAGACTTTCCTATCACATTAAAGCAGCCAACTTCATCAGAAACTTATACCGAAACCGAAAACCAATAATGGACGAATCTCAAGAAACAATGTTCATACACAGCCTAATAAAACTATCAGAAATTGGCATACCTCTCACTTCCGAAGTCATTTGCAGACTGGCTTTCCTTTTCTGCGAAAAATACGATATAGAACATAATTTTAATGTTGACGTGGGTCTGGCTGGAAAGGACTGGTTCAGGGGGTTCTTAAAACGGAATTCAGAGTTATTTATGATCAGAAATAATGGCAACAGATCTTCAGATCAATAA
- Protein Sequence
- MGIPSEYARKHGTWSEENLRAAMDAVKQRILSLREAEDRYGVPRQTLSDHLKSGNIMKRLGRLSIMSEVQEEAFVNSIKQLSKCGVSLTPKIIRKHAFDFCQENSIKHKFKSSAGLAEWIRLPIPRATWTEENLRAAMAAVIKENMPQRSAADYYGSSETSSKRKRQPRWTEAALRAAVEAVQSGKLPLHIAARRYDIPRRRLSYHIKAANFIRNLYRNRKPIMDESQETMFIHSLIKLSEIGIPLTSEVICRLAFLFCEKYDIEHNFNVDVGLAGKDWFRGFLKRNSELFMIRNNGNRSSDQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -