Alep011524.1
Basic Information
- Insect
- Acronicta leporina
- Gene Symbol
- -
- Assembly
- GCA_947256265.1
- Location
- OX366541.1:4165718-4176732[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4.8 3.7e+02 2.3 0.4 1 23 218 240 218 240 0.83 2 13 7.9 6.1e+02 1.6 0.4 5 19 301 315 300 316 0.92 3 13 0.019 1.4 9.9 0.9 1 23 329 352 329 352 0.91 4 13 1.4 1.1e+02 4.0 0.1 2 20 390 408 389 410 0.90 5 13 7.3 5.6e+02 1.8 1.6 1 19 707 725 707 729 0.75 6 13 1.1 86 4.3 0.4 1 23 778 799 778 799 0.89 7 13 0.066 5.1 8.2 3.9 2 23 841 862 840 862 0.95 8 13 0.12 9.5 7.3 0.3 2 23 878 899 877 899 0.95 9 13 1e-07 8e-06 26.4 2.3 1 23 905 927 905 927 0.99 10 13 0.00024 0.018 15.9 0.4 1 23 932 954 932 954 0.94 11 13 0.0026 0.2 12.6 0.7 2 23 961 983 960 983 0.95 12 13 0.093 7.2 7.7 0.3 1 20 990 1009 990 1009 0.84 13 13 0.00032 0.025 15.5 0.2 3 23 1022 1043 1021 1043 0.97
Sequence Information
- Coding Sequence
- ATGTCGGATACATCGAGGAAACGTTCGAGAAAGTCGAAGTTAGTGCCGCGACAGTGTAGCTTAGAAGATGATGTGGAATTTCAGGATTTGCAGACTCCAATGTTTGAAGCTCTCAAAATCATGATGGACACAAAAAACGAAACCCAAGACAATCCTTTCCCAATCATAAAAACTGAAACTTGTAATTTGGATATTTTGAAAAAACTTTCTGCAGCAACTATGGAAAATACTGAACAAACATCTCCAATCAAATTCGATATTCAGGTGGAAGTCGAACAATGTGATGACGATATCAGCGGGGATATGACTTCTGATGACATCATGGACAGTTTCATGGAGATCTCAGAAAAAAATGAATCTAAACCGTTAAGAAAAGTTTTTACATACAATGCAAAGAAAATAGAGCAGAACACGTCAATCCCATTGCCAGTGCCGCTGTCAGAAACAAAAATACTGAAAGCGGCTGATGAAATTCTAGAAAATTCCACCAACCCAGCGGACAGAATCTTGGATATCGGTGTCAGAAACACAATAGGACATGAAAGGAAAGGACCATGTTATACTAATATGCATGATGATCTAATTCAAGAAACATTAGATGACTGGAAGACCTGGCAATTTAAAAGCTTCCACAGAGAAAGTCCTTTGTTTTATAAATGCTACATCTGCAATTTATCATGGTGGAATTTGTCCGAATTTCGAGACCATGTTTCCAACCATCCTGTCTTGAATATGGAACTGGAACAATATGAAAAACAAGAAATCAATTTGGTAGCGTTTGCTGGTAAAAGAGCAGTGATGGAAGATATATACACTGCTGGATTTTGTAATAAATGTGGCGATGATTATGATGCACATAAGCTCAGTAATCGATATCGCAAAAAGTATTATAAGAACAATGGTTGTACAAGGTTCTTTTTTAACTGTGTTGGCTTGAAAAACCATGTGCCATCTTGTTGTATATGTGATGTTGACGATAAACCATTCAAATGTCAGATTTGTAAGAACTCATTTGATACTGATGAACTTCTCTGGGTCCACTTAGGGTTATGCCATGATGTTCGATCGGATGTCCCTACTGAATGTCGATATACTGCTTGTAAAGAATGCAATGCCCGATATATGTCAAGCAATTTACATATATGTGGCAAAAAAGGCCCGCAGGTGCAGTGTCGTTATTGTTTCCTTAGTTTCCCGAATATAAATCTAATTGAGTTACATATGGAGAACTCCAGCGAGCCTTATAATTGTGATATCTGCGGGCAAGTGTTGTTGTGGAATTGTAAAAAATATGAACATATGATGACACACACCGATAAATATACTTTGGTTTGGAAGTGTGTGATTTGTGAGAAGTTTGAGGTGTTTCTTACCAATGATGCTGCGTTACGACATAGGTTTACAAAACATCCAGAGAAGGATAACAAGTACCAATTTATTATTAAAATTTTAGTGCCAAAATCCTGCCTAGAACCTGAATTGGAACCAAAAGAAGAACCGATGCCAGAATCGGAGACAGAAGCGGTGCCGAAAACCGAAACAGAAACAGTATCGGAATCCGAGACAAAATTCGTACCGGGATCTGATAAGGTATCGGTACCAATACCGGAACTGCAACAAATTGGTGTAAATATAATTGTAAAAGAAGAGCCGTTGGACATTGTTGAAAATCCCATTCAAATTATAGTTAAAAAGGAAAAATTGGATCCAGATGAGAACACTGCTGACGAGATTACATCTGATTACAACCCAGATATTGACATGTCATATGTAAAAATAAAACAAGAATATGATGACAATGAATGTGAAGATGACATTATAAAACTAAATATTGACATAAATAATGCATTTGCAATGTCACATGCACAATTAATAACACCAAAACAAGAACCTGTAGAAGAACCGCTGACCGAAGAACCATTTGGACACGAAACATCTGAATATCCAATCATAATCAAGCAGGAATCCATATTGGAACCAGAAGTTATATTAAATCAAAACGGAAGACGGCGAAAAAGGATTTATACTTGCAGAAAATGTGGTTACGGGGGCCTTCATAAAGACTACAAGAAACATGTTAATACTGACTGCAAGAGAACATTGCTCAAAGAAACTGCCTATTACTGTACTAAGTGTAACAGACAATATATGGGCATGAAGAAGTATCTGAGCCACTTTGTCGATCATGGTTTTCAGAGCTTATCTTGTCCGGAGTGCTTGCTTGAACACTATTGCTTTCCAAGGTTGATTGCGCATGTCCAGTCCCATATACGACAATCGTTTGTGCGAGTGAAACTGATCACTGAAAACGGTTCAAGGATGAAACCTGAATATCAGTGTAAAAAGTGTAGTGAAGTGGTTGTACCGTATTTGTTCTTCAATCATTGGGAGCTTCATGTTCATAGCAGTCCTGAGATTGCTGCGGCACACCTCAAAATGAAAGCTAAGCAAATCAAGCTCCAAGATGCCCAAGAGGAAACAATCAAGGAGAGTCTGAGGTGTCTATTAAAGTTCACCAAAGAATGCAACCAATGTCAACGGAAGTTTAATCGAATGAGTGAATGTAAACGACATATTATAGAACATCTACTAACACATGCTTATACACACAAGCATGAATCTGGAGAGCTGATATGCCAGAAGTGTGGCCTCGGCTTCTTGCTGGCGGATAAATATAAACAGCATATGCGGGATCATGCAGCGCTCCCAGTCTATAAGTGTGAAATATGTGACCGTAGTTTCAGTGATTCAAGTAACTTTACTAAACATAAAAAAGTGCACAATCTCAAAGTGTTTGTCTGTGACCTGTGCGGGAAGAAGTTCCAATCGAAATTGAGTTTGGAGAAGCATGTTGTGTTGCACGCAACCACGAAGCCAATCCCGTGTGTCAAATGCGACAAAATATTCTACTTCGATTCAAGCTACCGCCGACACGTCAGATATTTCCACGATAAAATCTCCGTAGGGTTCCGCTGTGTTATATGCAATAAGCGATTTCCGAGTCTCAAAGTCAAATGGAATCATATGTGGGAGGTTCATAAGGAGAGGACGCAAAAAGCGGACTGTCCCATATGTTCGAAGTCATTCAGAAAATACACAGATGTCCGTGCACATGCTAGAATTGAGCACAACGTCGATGTTTCTGTGTACAGAGTGAAAACCAAAAAACCTATGGTTGAAATTGGAAAATATATGGAAAATAAAACCACTTTCTTGCTAGGTAACGTGGAAACATTGGTGGTTTATGAATGA
- Protein Sequence
- MSDTSRKRSRKSKLVPRQCSLEDDVEFQDLQTPMFEALKIMMDTKNETQDNPFPIIKTETCNLDILKKLSAATMENTEQTSPIKFDIQVEVEQCDDDISGDMTSDDIMDSFMEISEKNESKPLRKVFTYNAKKIEQNTSIPLPVPLSETKILKAADEILENSTNPADRILDIGVRNTIGHERKGPCYTNMHDDLIQETLDDWKTWQFKSFHRESPLFYKCYICNLSWWNLSEFRDHVSNHPVLNMELEQYEKQEINLVAFAGKRAVMEDIYTAGFCNKCGDDYDAHKLSNRYRKKYYKNNGCTRFFFNCVGLKNHVPSCCICDVDDKPFKCQICKNSFDTDELLWVHLGLCHDVRSDVPTECRYTACKECNARYMSSNLHICGKKGPQVQCRYCFLSFPNINLIELHMENSSEPYNCDICGQVLLWNCKKYEHMMTHTDKYTLVWKCVICEKFEVFLTNDAALRHRFTKHPEKDNKYQFIIKILVPKSCLEPELEPKEEPMPESETEAVPKTETETVSESETKFVPGSDKVSVPIPELQQIGVNIIVKEEPLDIVENPIQIIVKKEKLDPDENTADEITSDYNPDIDMSYVKIKQEYDDNECEDDIIKLNIDINNAFAMSHAQLITPKQEPVEEPLTEEPFGHETSEYPIIIKQESILEPEVILNQNGRRRKRIYTCRKCGYGGLHKDYKKHVNTDCKRTLLKETAYYCTKCNRQYMGMKKYLSHFVDHGFQSLSCPECLLEHYCFPRLIAHVQSHIRQSFVRVKLITENGSRMKPEYQCKKCSEVVVPYLFFNHWELHVHSSPEIAAAHLKMKAKQIKLQDAQEETIKESLRCLLKFTKECNQCQRKFNRMSECKRHIIEHLLTHAYTHKHESGELICQKCGLGFLLADKYKQHMRDHAALPVYKCEICDRSFSDSSNFTKHKKVHNLKVFVCDLCGKKFQSKLSLEKHVVLHATTKPIPCVKCDKIFYFDSSYRRHVRYFHDKISVGFRCVICNKRFPSLKVKWNHMWEVHKERTQKADCPICSKSFRKYTDVRAHARIEHNVDVSVYRVKTKKPMVEIGKYMENKTTFLLGNVETLVVYE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -