Alep001995.1
Basic Information
- Insect
- Acronicta leporina
- Gene Symbol
- -
- Assembly
- GCA_947256265.1
- Location
- OX366537.1:2962427-2965835[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 9.1e-05 0.007 17.2 2.8 2 23 398 419 397 419 0.96 2 11 0.00043 0.033 15.1 0.6 1 23 494 517 494 517 0.97 3 11 0.0039 0.3 12.0 2.9 1 23 521 543 521 543 0.98 4 11 1.3 99 4.1 1.7 2 23 565 587 564 587 0.87 5 11 0.008 0.62 11.1 2.1 1 23 591 614 591 614 0.97 6 11 0.018 1.4 9.9 0.3 2 23 637 659 636 659 0.93 7 11 1.1e-05 0.00083 20.1 2.9 1 23 669 691 669 692 0.96 8 11 0.04 3.1 8.9 2.5 3 23 709 729 708 729 0.98 9 11 0.0054 0.42 11.6 0.3 1 23 735 757 735 757 0.96 10 11 0.43 33 5.6 2.6 1 22 763 784 763 787 0.90 11 11 0.0057 0.44 11.5 0.1 3 23 840 860 838 860 0.97
Sequence Information
- Coding Sequence
- ATGCCGAAAAAAGAAACAGCAACACAAAGGAAAAGGAGATTAGCTAAGGCAAAACTTAAGCGAATTCAGAAACTTAGAAATGAAACACCAGAGGAGCGTCAGCATAGATTAAAAAAACAACGACTGAATGCAAGAAAGCAAAGGCTCGGGCCTGAGGCATCTAAGACACAAGACCAGTCTGAATTAGAATTTGAACTGCAACCAAATTTTTTGTCTCAAGATGGTGGGTTGTTAAAAGTACGAAGTGTGGAATATCATAAAGAAGTAAACATATTTACTGACCAAATTTGTGAGCAAACAAAAATGACATCAACTGGCATTCCATCATCAACAAATACAGATCTGCAAACAGCTGCAATAAAAGAAGAAAATGACATGGACCATACAATCAAAGAAGAAATACTTGATATAAAAACAGAGATTGGCACAGATGATGTAGTGACACAAGAAACTTCCGACAATCCCTTCGAAGATGATCAGTTACAAGTTAAAGAGGAATTAATATCATTGAGCATTGAAAAAGAGAGTAATGACTCCGATGCTGAAGATTCTGAATCGAGAATGGATGACTTTGATGACGGAAAAGTGGAAATGGAACTTTACTCAACAATGCCAAAGTCTGAGACAGACTGTGATGGTAAATCCGAAGTGAAAGAGGAAACAGTGTTGGGAGACGAATCTCTAGTGACATATGATTATCCTAATTTCGATGATGTTGGCAGTATGGATAGCAATGAAGCAGATGCATTGACCCACGTTGAAGCTTGTCTGCAAGACGACATTAATATCAAGACCGAGGATGATGATCATGACGAGAAAGAAGATTACGACAAAATGAACATCAAAGAAGAATCAGACCTGACAGTAACGGAAACACATTTGATATCCAACAAAGTTATCAACACCACATCCACAATCACCAACCCACACGACGGCATCATCGAATCCAAAACCACCAAGACCCTAGTCATGGAAATACTTCCCATGTCGAGAAATGACATGGCGTTCTCTAAACTCGGCAACCCGGAGGAAATCCTACCAACTACATACAATAATAGTGAAGACTTTATTGACTACCAAGACTCCTTCCAACTCAATTCTATTACTGGTAACATTTTGTCACTAGAACAGGAAGCGTATGGTCTTCTCAAAACGAAAGGGAAGAAGAAAGACTCAGGAGAGACTTTACTCACGTGCCCCAAATGCCCCAAGACATACCGACAGAAAACTTGCATGAAAAGACATTTAGCTGTGCACGATTCTATTGACAAACGGGCTCAAGGCTTCAAGAGGAGCCTAATAACCAAGAAAGAGAATCGCAAAAAGAAGTTGAAAGCAGAACTTGAAAGTCAAGTGGTTAAAAAAGAAGAAAAAATTAAGAAGGAAGGCTATGAATGTACTTGTGGACAAGTATTTCAAAGGCGGAGTCGAATGGAGACTTGTTTAAGGTCCCATAATCTGTTTAGCGATACTAACACCTACCCTTGTGTGTCGTGCTCAAAGCAGTTCAAAGACAAAGAGGAACTAGCTCTGCACCGAAAAAGGTTACATCGAAAGAGATTCCCGTGCAAATTCTGTCCAACAGACTACCACACGCGGAAAGAACTCTTCAAACACCTACAAGTCCACCAAAAAGTTCAATTAATGGAGTACAAGGTCATTTCCGAAGTTGTCAAGGGCAAACAGAAGCTGAAATGCTTCATGTGCTCCAAGAGTTACATGGAATTGTCAGACTTGAAGTGTCACGTCATGGATGACCACAAAGAGCCTTACAGCTGTCCTCGGTGTAAGCGGACCTTCTCGAAAATCATCGACTTCGGCACCCATACGAAAACCTTCCATCCTGAAGTTGAGGGGCAATCGGTTTTGGACGTTCTAGAAGCATTCTCGAAACTAGTCAAGGCTTGGAAATGCGAAGAATGTGGGCTACAGTTTCACGAGGCAGATAAACTGGCGATGCATCAGATTGAAAAACACAGTCCAGATTTAAAAGCCGAGACCCAGTTCCAATGTACAGACTGTCGGAGAGTCTTCATCAGTCAAAAAGGTCTGACTTCCCATCGACGGATACACCACAGCACAGAAACTGTGGAAGAATCTGAAACAGTTGAAAAAGGCGTTTTGTGTCTAGAATGTAGAAAAATTTGTAAGGATATGAACACATTACTATCTCATATGCGTCTCCATTCACCAGAGAGGAAGTACCCGTGTAAATTCTGTGATTTCCGCTTCGCTACCCCTGAAAAGCGGAAAGCGCACGCTGAAATTCACACTGGCGACATGAAGTACGTCTGTTTTATATGCGAATACCAGTGCAGCTCCGAGAATCGACTAAAACAACACAAACTATCGCCTAAACATATTAATATGAAAGAGTTTTTACTAACTGGAAAGCCGTTGGTAGAAGAAGCTCAGTCTTCTTCAAAAGAGACTTTGAGGAAGAAGGAGGGGGTCAAAGAAAAGAAGAAAAGAGAGAAATCTAAGAGTGAGTCGGGGTCTGAGTGCAGTGAAGTGGCTTGTGATATCTGTGGGGACAAGTTCCCGAGTGAGAGTGAGATGCAAGAACACAAACAAACACATCCATTCATTGAGTTCCCTAATGAAGATAAACCTAGTAGGATATTTTTTAAGTAA
- Protein Sequence
- MPKKETATQRKRRLAKAKLKRIQKLRNETPEERQHRLKKQRLNARKQRLGPEASKTQDQSELEFELQPNFLSQDGGLLKVRSVEYHKEVNIFTDQICEQTKMTSTGIPSSTNTDLQTAAIKEENDMDHTIKEEILDIKTEIGTDDVVTQETSDNPFEDDQLQVKEELISLSIEKESNDSDAEDSESRMDDFDDGKVEMELYSTMPKSETDCDGKSEVKEETVLGDESLVTYDYPNFDDVGSMDSNEADALTHVEACLQDDINIKTEDDDHDEKEDYDKMNIKEESDLTVTETHLISNKVINTTSTITNPHDGIIESKTTKTLVMEILPMSRNDMAFSKLGNPEEILPTTYNNSEDFIDYQDSFQLNSITGNILSLEQEAYGLLKTKGKKKDSGETLLTCPKCPKTYRQKTCMKRHLAVHDSIDKRAQGFKRSLITKKENRKKKLKAELESQVVKKEEKIKKEGYECTCGQVFQRRSRMETCLRSHNLFSDTNTYPCVSCSKQFKDKEELALHRKRLHRKRFPCKFCPTDYHTRKELFKHLQVHQKVQLMEYKVISEVVKGKQKLKCFMCSKSYMELSDLKCHVMDDHKEPYSCPRCKRTFSKIIDFGTHTKTFHPEVEGQSVLDVLEAFSKLVKAWKCEECGLQFHEADKLAMHQIEKHSPDLKAETQFQCTDCRRVFISQKGLTSHRRIHHSTETVEESETVEKGVLCLECRKICKDMNTLLSHMRLHSPERKYPCKFCDFRFATPEKRKAHAEIHTGDMKYVCFICEYQCSSENRLKQHKLSPKHINMKEFLLTGKPLVEEAQSSSKETLRKKEGVKEKKKREKSKSESGSECSEVACDICGDKFPSESEMQEHKQTHPFIEFPNEDKPSRIFFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00810484;
- 90% Identity
- iTF_00018497;
- 80% Identity
- -