Alep011456.1
Basic Information
- Insect
- Acronicta leporina
- Gene Symbol
- Bcl11b
- Assembly
- GCA_947256265.1
- Location
- OX366541.1:3092169-3102202[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.21 16 6.6 1.1 1 23 275 298 275 298 0.92 2 10 0.0041 0.31 12.0 1.9 2 23 334 356 333 356 0.96 3 10 0.047 3.6 8.7 5.6 1 23 360 383 360 383 0.97 4 10 0.00032 0.025 15.5 1.1 3 23 388 409 387 409 0.97 5 10 0.00072 0.055 14.4 3.1 2 23 413 435 413 435 0.97 6 10 0.023 1.8 9.6 2.6 2 21 449 468 448 473 0.92 7 10 7.7e-06 0.00059 20.6 0.3 2 23 482 504 481 504 0.95 8 10 0.016 1.2 10.1 2.8 1 23 510 533 510 534 0.95 9 10 0.0002 0.016 16.1 0.8 3 23 544 564 543 564 0.98 10 10 6.4e-06 0.0005 20.8 1.7 1 23 570 593 570 593 0.98
Sequence Information
- Coding Sequence
- ATGGACGTTAAAAACGAAAACAATCATATATTCACACTATGCCATGGCTGTTTGAGCGCTGACAGGCAGCTTTCGCGCGTAACTGATGATAAAAAAGCGCTATTCATGAAATTGAAAGACGACTTCGGTGAGAAGAGAAGTGCGGGAGAGACTAAAGAGCTACAATTGTGTTGGGAATGTGTTGCTCTACTGAATAAAATGAAACACTTTCAAGTTCGTATCAAAACGGCACAGTACAGATTGATTTGTTACCTCCACACACTCTATAAGGATGATATCCACACATTATCATTATCGCCTCTAAAAAAAACAAAACAAACAAGCCAGTATGACTATAAACACAAATTTACCCATTTACAAGAAGAAAAGCTTCTTATACCTGAAGATAAAGAACTAATACTTGAAGAAAAAGAACTAAAACCTGATGAAAAAGAAATATTACCTGATGACAAAGGACTAATACTGGAAAAAAGTGAAAGAGACAATGAATATTTAGTATACGGTATAAAACAAGAAAGTTATGAGAGTTCTATCAAAGAAGAGTACGAAAACATTAGCAATGATAATGATTACAATTTCTATGAACGGCATTTAGAACTAGAGATAGAGGAAAACATTGCAACAGTAACTAAAGGATATAGAAAAAAAAACCTTCAGAAGAAATCCATAAAAACTTATGAAAGATTCGCAACTATCACCAAAAATAGTGGTCTATTTACAAAAAAAGTGAATAGTCACTCTGAAACTGTGTTCCTAAGTGAGAAAGAAATAGAAACAGTGTTGGAAAGAGACAGAAAATATGTTAATTTTACAAGAATGCCTTTTAAATGTGAAGTCTGCATCCTGGGTTATAAGAGAAAACTGGATTTATTGAGACACCGGACTTTCAATCACGATAATACACAATTTCCCAGTTCCTGCTTAGCTTGCAACTCCCAGATCCACTCGATGTCCCAACTAGAGGAGCATTGGAAGGAGTACCATATGCCGAAGATGCTGCGATGTACCTTGTGTGGAGAACTGTGTCGCTCTAGCGGAGAAATGAGAAAACACCTGAACAGGTCGCACACGAAGACTTATGCTTGTAATAACTGTCACCAGGAATGTAGATCTCTTCGAGAATTTAGTAATCATTACAGAAGAGACCACGAAGGAGCTATATGTGATTATTGTAACTCGAGTTTCTCTTCCAAACGGAGATTGGAAGTTCATATCAAGCGAAACCATCTTCCAGCATATTGTAAGATCTGCAACCGCAGTTATAAAACCTACCATGTGTTTGAGACCCACCTCCGCACGGATCACCCGGAGCTGATGTCACAGGATACGCGCGAGGAGATGTGCTACTGTGTGGAGTGTGACAAGCAGTACTCCAGCATTTATAAATACAAGCGTCATTTGCAGCAATCAGCCCGACACACGCCAAGAAAAATAGTTAGAGTGCCATGTCCGGATTGCAACAAGATATTTACCCGGACATCATACATGAATAATCACTACCGTTTAGTTCATAAAAAGCAGAGCAAGCATTACTGTGATCTTTGTAACAAGTACTTCGCGAATGGGTACGGTGTTCGCAAGCACATTCAGTACGTGCATCACAAGATACCAATGCCCAAAGACAAGATCTGTGATCTCTGCGGTCGAGGCTTCAGTACGAATAGAATACTAACGAATCACCGTCGGACGCACACGGGCGAGAGGCCGTTCAAGTGCCCGCATTGTCCAGCCAGCTTCGCGCAGAAAACCGCCATGAACACTCACCAGAAGACACAACACAAGAATGTAATACCTAGCTAA
- Protein Sequence
- MDVKNENNHIFTLCHGCLSADRQLSRVTDDKKALFMKLKDDFGEKRSAGETKELQLCWECVALLNKMKHFQVRIKTAQYRLICYLHTLYKDDIHTLSLSPLKKTKQTSQYDYKHKFTHLQEEKLLIPEDKELILEEKELKPDEKEILPDDKGLILEKSERDNEYLVYGIKQESYESSIKEEYENISNDNDYNFYERHLELEIEENIATVTKGYRKKNLQKKSIKTYERFATITKNSGLFTKKVNSHSETVFLSEKEIETVLERDRKYVNFTRMPFKCEVCILGYKRKLDLLRHRTFNHDNTQFPSSCLACNSQIHSMSQLEEHWKEYHMPKMLRCTLCGELCRSSGEMRKHLNRSHTKTYACNNCHQECRSLREFSNHYRRDHEGAICDYCNSSFSSKRRLEVHIKRNHLPAYCKICNRSYKTYHVFETHLRTDHPELMSQDTREEMCYCVECDKQYSSIYKYKRHLQQSARHTPRKIVRVPCPDCNKIFTRTSYMNNHYRLVHKKQSKHYCDLCNKYFANGYGVRKHIQYVHHKIPMPKDKICDLCGRGFSTNRILTNHRRTHTGERPFKCPHCPASFAQKTAMNTHQKTQHKNVIPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -