Basic Information

Insect: Acronicta leporina
Gene Symbol: -
Assembly: GCA_947256265.1
Location: OX366539.1:2809384-2810424[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.07 5.4 8.1 0.7 3 23 29 50 27 50 0.89

2 10 0.41 31 5.7 0.0 2 23 75 97 74 97 0.94

3 10 0.00069 0.053 14.4 1.8 1 23 119 141 119 141 0.97

4 10 0.0035 0.27 12.2 1.5 1 21 145 165 145 166 0.94

5 10 0.036 2.8 9.0 1.3 2 21 176 195 176 196 0.91

6 10 0.01 0.79 10.7 0.6 1 23 203 226 203 226 0.89

7 10 2.3e-05 0.0018 19.0 1.9 1 23 233 256 233 256 0.97

8 10 2.7e-06 0.00021 22.0 0.5 2 23 262 283 261 283 0.96

9 10 6.2e-05 0.0048 17.7 0.2 1 20 289 308 289 311 0.93

10 10 8.7e-06 0.00067 20.4 3.8 1 23 317 340 317 340 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.07	5.4	8.1	0.7	3	23	29	50	27	50	0.89
2	10	0.41	31	5.7	0.0	2	23	75	97	74	97	0.94
3	10	0.00069	0.053	14.4	1.8	1	23	119	141	119	141	0.97
4	10	0.0035	0.27	12.2	1.5	1	21	145	165	145	166	0.94
5	10	0.036	2.8	9.0	1.3	2	21	176	195	176	196	0.91
6	10	0.01	0.79	10.7	0.6	1	23	203	226	203	226	0.89
7	10	2.3e-05	0.0018	19.0	1.9	1	23	233	256	233	256	0.97
8	10	2.7e-06	0.00021	22.0	0.5	2	23	262	283	261	283	0.96
9	10	6.2e-05	0.0048	17.7	0.2	1	20	289	308	289	311	0.93
10	10	8.7e-06	0.00067	20.4	3.8	1	23	317	340	317	340	0.97

Sequence Information

Coding Sequence: ATGTACATCGCGAGACAGAACGCAAAAACGGTGATAGAGTATACCACAGCTTACCCCTTCAAGCTGCCAGAGTCCTCCATGGTTTGCGTGTACTGCTGTGATAGCTTCCCAGACCCCTCAAAGTTCAGACAACACATGAATCTAGAACATCAGGACTTCAAAGTACAAATGGCGTTTGCGCACATCGCAGAAGGATCCATTAAAGTCGACTGTACCGACCTCAAATGTAGAATTTGCTCAGAAATTTTATCAACCTTAGAACAAGCTGCGGACCATTTAATCAAAATACACAATATAAACATAAATTCTAAATACGACTTAGGCATGCACCCGTTCAAAATTAATTTAGGTAGATACTCTTGCGCACTTTGCTCGGAGAAATTTTCGACTCTCGCTTTATTGAGTAAACACACACATTCACACTACGTCCAATACACTTGCGATTCCTGCGGGAAATCTTACGCGTCATTAACGTCATTACAATGCCATCTCAGGTACAACTGTGGCAACGGAGCCGACAAAAATAGGTGTAGGAAATGCAGAAAAGTATTCACCTCGCTAAAAGAACGGACACTACACTTGGAAAAGTCGAAGAGATGTCGCCAGCACGTGTGTAACCTCTGTGGTGAAAGATTCGTAACGTGGAATATAAAACAAAACCATCAAAAGGAGGCTCACAGCATACCAGAGAGAACTTACAACTGCCCTGAGTGTAATTTAGTATTTAGGAAGCGGGATAAACTAAGAATGCATTTCAAAACTACCCACACGAGCGATTTCGTTGAATGTTCATACTGCGAAAAAAAGTTCGACAACGAAAAGAATTTAAAACGACACATCGTAATACACACGGGCGAAAGAAACTTCATTTGCACGGTGTGTTCGAAGGCGTTTCCGAGGAAATCTACATTAGGACAACATATGTGGATTCATAGTGAAGTGAAAAAACATGAGTGCAAAATGTGCGATAAGACGTTCAACCAGAGAGTGAGTTGGAGAACTCATATGAAGTCCAGACATCCGGAGTTGTGCGTTTATTAA
Protein Sequence: MYIARQNAKTVIEYTTAYPFKLPESSMVCVYCCDSFPDPSKFRQHMNLEHQDFKVQMAFAHIAEGSIKVDCTDLKCRICSEILSTLEQAADHLIKIHNININSKYDLGMHPFKINLGRYSCALCSEKFSTLALLSKHTHSHYVQYTCDSCGKSYASLTSLQCHLRYNCGNGADKNRCRKCRKVFTSLKERTLHLEKSKRCRQHVCNLCGERFVTWNIKQNHQKEAHSIPERTYNCPECNLVFRKRDKLRMHFKTTHTSDFVECSYCEKKFDNEKNLKRHIVIHTGERNFICTVCSKAFPRKSTLGQHMWIHSEVKKHECKMCDKTFNQRVSWRTHMKSRHPELCVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00000609;
90% Identity: iTF_00018458;
80% Identity: -