Alep002234.1
Basic Information
- Insect
- Acronicta leporina
- Gene Symbol
- -
- Assembly
- GCA_947256265.1
- Location
- OX366537.1:8598762-8601239[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0076 0.59 11.1 0.9 1 21 235 255 235 256 0.93 2 17 4.9 3.8e+02 2.3 1.0 3 21 265 282 263 283 0.90 3 17 0.34 26 5.9 2.1 2 23 315 337 315 337 0.94 4 17 0.00016 0.012 16.4 0.3 1 23 343 366 343 366 0.97 5 17 0.12 9.1 7.4 1.8 1 21 370 390 370 391 0.89 6 17 0.0051 0.4 11.7 0.1 1 23 399 422 399 422 0.95 7 17 4.3 3.3e+02 2.5 1.0 1 23 427 450 427 450 0.87 8 17 2.3e-05 0.0018 19.0 0.4 2 23 463 484 462 484 0.97 9 17 1.4e-05 0.0011 19.8 0.7 1 23 488 510 488 510 0.98 10 17 0.38 30 5.8 1.8 2 23 516 536 516 536 0.96 11 17 1.4e-05 0.001 19.8 0.8 2 23 542 563 541 563 0.97 12 17 0.052 4 8.5 0.3 2 23 568 588 567 588 0.95 13 17 2.1 1.6e+02 3.5 4.2 2 23 607 628 606 629 0.94 14 17 2.5e-05 0.002 18.9 2.0 1 23 635 657 635 657 0.98 15 17 0.0013 0.097 13.6 0.5 3 23 664 684 662 684 0.96 16 17 0.0012 0.092 13.7 0.8 1 23 690 713 690 713 0.93 17 17 0.034 2.6 9.1 0.1 3 23 720 741 718 741 0.94
Sequence Information
- Coding Sequence
- ATGGACTGTTTCAAGCAGAAAATTAAAAGTATTCTGCAGAGCACACAGTTTTGTGGACTCTGTTTAGATAGCGAAGCCAAATTATGTATTATTGATAAAAAAATTGAGATTATTGTAAACCAACAATCTCGTACTAAATCTTTGAGAGCTATCAGTAATGTAGTGTTTAGAGAGACTGAAAACATCCTTGCAAGTTCACTAATATGCAGCTCCTGTACAGAAAACCTGTTGCAGTCATACATCTTCATAGAAAATGCCATAGAAGCATCTAGAATTGTCAAGGGTTATGTTAATGACTTATTTTGCAAATCAAATGATATATTTAGCCATTTGATGGATGCAAATATGGAAAGCTCAAATGTTTTTATTGTATTAGAAAATATTGAAGACATTTGTTTTTCTAAAAGCAATGCTGAAAAAGTAGGGAACGCAAAGAATGATATTACCAAAAAATCTGTAGCTCCAGAAAAGCAAAATTCCAAATTCAAATGTGTCAAATGCAATGATATTCTACCCTCATTATTAGAATTAAAGTTCCACAAAATTGGATGTAAAAGGCTTGAGTCATTACATAGTAAAGAATCTCTATCCAATAAACAGAATTTAGATGCACAGACTTTAATAAACTGCAGGTTTTGTCAAGAAATACTTCATGAAAATGAATCATTGGAACATATGAACATGTATCATAAAGATTATTTACACAAATGTCTCAAGTGCAGTAAAATATTTTATTCCCTAAATGAATTGCAAAGCCATGGAAAGATCTGTCTCTTGGAAGAAAACATACATTGTTTGAAATGTTTAAAACAATTTACTGAAGTAGAACTAATATCTCATATTTGCTTGGATGGTTGTCCCGAATGTTCTGAAGATCCTTGCATACACCATAGGTACCTTATGTGTTATAATGAACAGAAATTGAACAATGCATGTGAAGCTAAATGTCTAGACTGTGACTTTGTTTGTCGACAAAAATTGAAATTAATAGGTCATGTTAATCAGAAACACTTGAATCATCATCCCTATACTTGTGATGTTTGTGCTCAGCAGTTTCCTTCTAAAGACAATCTCAAAGGTCATATTTTAAGGTTTCATAAAGAATTTTTTGTTTGCCAATACTGTGACTGTAAGTTCCGCAATATTAATGTATATGAGAGTCATGTGAAGTCTTGTGAGGGTATCACAAGGAGGTTTGCATGTAACAATTGTCCAGCCTCCTTTGATTCTCCTAATAGTATGTTGAATCATGTGAAACTTAGACACAGTAAGGACATATTTCCATGTGGTCTTTGTAGCAGGAAGTTTCTTAAAGAGTCCAAAAGGTTGGAACATATGTTCAAAGTACACAATCACCAGAGAATTAAGAATGAAATGGCTCATGTAGAATGTGCAATATGCCAAGAAAAGTTCAACACTAAGAAAGAATTAGTACAACATATGAAATCCCATGACTTCAATTATCCATGCAACATTTGCAACATAACATTTGACACTTTGAGACAATTAAAAGCTCATAATCGCAAACATAATGGACCTTTTGCGACATGTCATGTTTGTGGTGAAAAGATGAGAGAAATCTTGCTAAAAAGACATCTGACTACCCACACAGATTCCATAGTAACATGTGAAACTTGTGGCAAATCTTTCCGCAACATTCAATTGTTAAAATACCATCAAAAAGTGCATCTAGAAAGTGTACCATGCCCTAAGTGCAAGAAAATGATAAATCCTGCGAGATTGCGGAGACACCGGAAAGGGCATTTAATTGCAGAAAACCCAGATCAAAGAAGAGCTAGAAAAAAGGTGCCTCACTTGAAATGTGATCAATGTGACTACAAAACTTATAATAACTTATTGCTAGAATGTCATATCAATCGGCACCACGTCAAAGTCAAGCCATATGTTTGCCACATATGTAGCAAGGCTTTCATAGGAAAACATTTGCTGCAGAGCCACATAGAAAGACACAATGTGAAAAGCATTGCGTGTATGGTTTGTTTGAAGAGTTTTGCTAACCCTGTATGTCTGAAAATGCATCTACGTCTACACACTGGCGAAAAACCTTTTACTTGTGAAATATGTGGAGAGAGATTCCGCTCATCCAGTATTATGAATGTGCACAAGCTTAAAAAGCATTCAGAAAAGAATATTATCTGTCCATTGTGTGCAAATAAGTTTTATACTGTGAGGGATTTGAGGAGGCATGTTATAAAAGTCCATTGGAAGCAGAAAAATAAGCCATTTGATCCTAGAGAGTTGAAAGGCTTAGATAAAGAGCACTACCACTTATTCCATGATGGTAGGAGGGTAAAGGTTGATGATGAAGAAGTGGACATTTATATGCCCTGTTTATCATCAAACTAG
- Protein Sequence
- MDCFKQKIKSILQSTQFCGLCLDSEAKLCIIDKKIEIIVNQQSRTKSLRAISNVVFRETENILASSLICSSCTENLLQSYIFIENAIEASRIVKGYVNDLFCKSNDIFSHLMDANMESSNVFIVLENIEDICFSKSNAEKVGNAKNDITKKSVAPEKQNSKFKCVKCNDILPSLLELKFHKIGCKRLESLHSKESLSNKQNLDAQTLINCRFCQEILHENESLEHMNMYHKDYLHKCLKCSKIFYSLNELQSHGKICLLEENIHCLKCLKQFTEVELISHICLDGCPECSEDPCIHHRYLMCYNEQKLNNACEAKCLDCDFVCRQKLKLIGHVNQKHLNHHPYTCDVCAQQFPSKDNLKGHILRFHKEFFVCQYCDCKFRNINVYESHVKSCEGITRRFACNNCPASFDSPNSMLNHVKLRHSKDIFPCGLCSRKFLKESKRLEHMFKVHNHQRIKNEMAHVECAICQEKFNTKKELVQHMKSHDFNYPCNICNITFDTLRQLKAHNRKHNGPFATCHVCGEKMREILLKRHLTTHTDSIVTCETCGKSFRNIQLLKYHQKVHLESVPCPKCKKMINPARLRRHRKGHLIAENPDQRRARKKVPHLKCDQCDYKTYNNLLLECHINRHHVKVKPYVCHICSKAFIGKHLLQSHIERHNVKSIACMVCLKSFANPVCLKMHLRLHTGEKPFTCEICGERFRSSSIMNVHKLKKHSEKNIICPLCANKFYTVRDLRRHVIKVHWKQKNKPFDPRELKGLDKEHYHLFHDGRRVKVDDEEVDIYMPCLSSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -