Alep012978.1
Basic Information
- Insect
- Acronicta leporina
- Gene Symbol
- -
- Assembly
- GCA_947256265.1
- Location
- OX366518.1:12306643-12311246[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 8.9e-05 0.0069 17.2 1.1 3 23 169 189 168 189 0.97 2 11 0.3 23 6.1 0.2 2 23 194 215 194 215 0.97 3 11 0.0066 0.51 11.3 8.5 2 23 222 244 221 244 0.97 4 11 0.0054 0.42 11.6 0.9 2 23 253 275 252 275 0.94 5 11 2.4e-06 0.00019 22.1 1.8 1 23 280 302 280 302 0.98 6 11 0.0009 0.069 14.1 3.6 1 23 308 331 308 331 0.95 7 11 2.1 1.6e+02 3.5 2.7 2 15 337 350 336 357 0.81 8 11 0.00063 0.048 14.5 0.2 3 23 363 383 361 383 0.96 9 11 0.00033 0.026 15.4 0.2 1 23 389 411 389 411 0.98 10 11 0.00098 0.075 13.9 0.2 2 23 418 439 417 439 0.98 11 11 3.9e-07 3e-05 24.6 3.3 1 23 445 467 445 467 0.99
Sequence Information
- Coding Sequence
- ATGGAGATGTGTAGAGTGTGTTTATCAACAGAAAAGCAAATGCTTCCTCTGGATGAAGCTTTTGCTAACAACTATAACTTATTGACAAATCTTAATATAACTTTATTAGATGGAATGCCACAATATTCATGTGTGGCATGTGTAGACACAGTAAATTTTTATATAGACTTCAGAGAAAAGTCTATTATATCAGAAACCACACTGAGAGAGATTATTTATTCGGATGTTAAAGCTGAAAACAAAACAAATGAAATTGAAATTGATAAGAATGCTTCAATATATGAAAATAACAATGATGACTTGCTGGTTATAAAGTCAGAAATCAAAGTGGAAAATGATTATACTGTAGACAACTTTGATGTATTCGGTGAATATGATGAAGATATAAAGGATTTTATAGTTAAAAAGAATGAAGAGGATGTGAAACCAAAAAGAATAAAAAAGAAAAGCCCTAAGAAATCCAAATCGAAAGAAAGCAATACTGGCACTGAGGATTGGTTGCTTTGTGGTATATGCCCTAAGACATTTGAAGAAAAATATGACCTTTGCAAACATCTGGATAGCCACAAGAACGACAGACGGTGTAATCTTTGCAGAGAGCCACTGAACAGCTTCTCCCAGGTGCTTGCTCATAGGCTGATACATGTCTCATTGAAACAAAGTAAATGTCACATTTGTGAAAGAAGGTTTAAATCTTGCTTATATCTGGAACATCACTATAGGAAAATGCATATTGAAGGAGATGATAGAAAACTTTCTTGCAATATCTGTACAATAACATGTGATACACCAAAAAAACTGAGCAGTCACATACTGCAAGTGCATTCTAGTATAAAGTATTTTTGCGACATATGTTCAAAAGGTTTCCAAAGCAAGACAAATCTGAAGTCACACATAAGGTCCCACAGTAAGAATAAAGCTTATGTTTGTGATATATGCGGATTTTCTTGTAAACATAGTGGTGGACTAAAGGATCATAAAACAAGAAGACATAATCCGAAAAAGGTGTATTGTAAGCAATGTAAGCGGCCTTTCATTAGTCAAGAGGAACATGATAAACATAAATGTTCATTAAAGTCAACTATATGCCCTGTTTGTGGACTGCAGCTCAAAAGGAATGCTAGATTATCAAGGCATATGTCGATTCACAGCAACATTCAAAGATATGAATGTACAAGATGTCCTGCTAAATATAAATCGAAGAACGCACTGATCGCACACCTGGACCGGCACGACGGCAACCGAACTAAGCAGTGTGAATTCTGCCCTGCTAAGTTTTACACGGCCGCCGTTCTCATCAAACATCGTCGTATACATACAGGTGAAAAACCTTATGTGTGTAAGGTTTGTCATAAAGGGTTTACAGGTAACCACAACCTCAAAGTGCATATGAGAGTACATGGAGAATATTTGATTGTTAAAAAGAATAGTGAACAAGACGATATAATGTTAATGTTACCAAGTGAAGTTAGTTAG
- Protein Sequence
- MEMCRVCLSTEKQMLPLDEAFANNYNLLTNLNITLLDGMPQYSCVACVDTVNFYIDFREKSIISETTLREIIYSDVKAENKTNEIEIDKNASIYENNNDDLLVIKSEIKVENDYTVDNFDVFGEYDEDIKDFIVKKNEEDVKPKRIKKKSPKKSKSKESNTGTEDWLLCGICPKTFEEKYDLCKHLDSHKNDRRCNLCREPLNSFSQVLAHRLIHVSLKQSKCHICERRFKSCLYLEHHYRKMHIEGDDRKLSCNICTITCDTPKKLSSHILQVHSSIKYFCDICSKGFQSKTNLKSHIRSHSKNKAYVCDICGFSCKHSGGLKDHKTRRHNPKKVYCKQCKRPFISQEEHDKHKCSLKSTICPVCGLQLKRNARLSRHMSIHSNIQRYECTRCPAKYKSKNALIAHLDRHDGNRTKQCEFCPAKFYTAAVLIKHRRIHTGEKPYVCKVCHKGFTGNHNLKVHMRVHGEYLIVKKNSEQDDIMLMLPSEVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01377790;
- 90% Identity
- -
- 80% Identity
- -