Alep018419.3
Basic Information
- Insect
- Acronicta leporina
- Gene Symbol
- -
- Assembly
- GCA_947256265.1
- Location
- OX366513.1:16364044-16378676[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2.4 1.8e+02 3.3 0.9 2 23 266 287 265 287 0.87 2 15 0.041 3.2 8.8 0.8 1 22 292 313 292 316 0.92 3 15 0.0033 0.25 12.3 2.6 2 23 444 466 443 466 0.94 4 15 0.015 1.2 10.2 0.0 1 23 472 494 472 494 0.95 5 15 2.5 1.9e+02 3.2 0.1 1 13 640 652 640 653 0.85 6 15 0.04 3.1 8.9 0.2 1 23 750 773 750 773 0.88 7 15 3.1e-07 2.4e-05 24.9 3.5 1 23 778 800 778 800 0.98 8 15 0.0002 0.015 16.1 1.0 1 23 806 828 806 828 0.95 9 15 0.00057 0.044 14.7 5.3 1 23 834 856 834 856 0.98 10 15 3.3e-07 2.6e-05 24.8 0.8 1 23 862 884 862 884 0.98 11 15 0.00099 0.077 13.9 3.8 1 23 890 912 890 912 0.98 12 15 0.00099 0.077 13.9 3.8 1 23 936 958 936 958 0.98 13 15 0.00099 0.077 13.9 3.8 1 23 982 1004 982 1004 0.98 14 15 0.042 3.2 8.8 1.4 1 21 1062 1082 1062 1084 0.94 15 15 8e-06 0.00061 20.5 3.6 1 23 1090 1113 1090 1113 0.96
Sequence Information
- Coding Sequence
- ATGGAAGTATTTCTGTATAATTCTACTGTTTGTCGATTATGTGGGGAAGAAAATGATAACGGAACTTTATTATATTTGAGTGAAGAAAATAGTCAAAACTTAAGTGAATTAATTAACACGTATTTACCTATCAAGGTGTCCGATGATGGACAGCTGCCTCGGACAATTTGCCCAGGATGCACCATACAATTGGAAGCCACCGTAGAATTCCTTACTCTTATTATAAATGGACAAAAAATTATCCGCGATCTTCATCTCAGAGAAAAAGAATACAAAAAAACCATTCTAAATCCTACACATGAAGAAGACATAATCACAGAAAATATAATTTACGAAGTTAACACTAGCAATGGAGTGTACCAAGTTGAGCACCCAATTGCATTACAAGTTGCTGGACTAGAAAAGCCAAAGCGGAAGCGTGGTAGACCACCAAAAAAACCTAAAACTCCTGAGGAGTTGGCTAAGGAAGCCGCTGCTAAGGAGCAGGAGGTAAAAAATGCAAAAAAATATGACAAGGATGATGAGCCCAGCGGTAAGAGGAGAAGGAAAACCCCAACAAGATTTAAAGAAGCTGTTCAGGGTAAAGAGCTTGAGAGGATATTTAAAGAAGAAGGAGTGACAGATGGAGAAGACAGTGAACCTGAGGTTAAAGTGGATGTTTCTCAAGGAGTGAAGGTTCCAGTGTCTAAGGAACCTCAAATTATAGGACATCTAGAGGAATCTGGTGAACTTGTTGTTATGGTCAAAGGCAAAGGCCGTGGGAGACCTAGAGGCCCAATGCATACATCCCGCAAAGAATGTGGTATTTGTGGAATGGAGTTCACTTGTAAGGGACGGTATATGTCACATGTGGCCCAACATGGTCAAGTGCTGTACCAATGTGTGGAGTGCTCAGACACCTTCACCACTCGGTTAGATTTCAACAGCCATCAGAAAGAGTCAGGACACAGTGGACAGAATATCATACCTTGCAAAAAGAATAACGAGAAAACTAAGACTAAGAAAAGTGAAATTCTTGAAACCACTACAATAACAGATGAACCACAACCAGTGAAGCATAAATCACCATCAGTACAAAACATAGACAATGTGATATTACCGTTACCAAACTCCTTGCCAGATTTAAATCCAGAACCAATAGTTGTTGATGACATAGTTCCTAGTGTGGAGTTCCAGTTGAAAACTGACAGTGCTACAATTGAGGTTCCTACTAATACCACTGCTGATAATGTTGTGAAAATTGATGACCCAACCCAAGACACAGCTGTGGAAGAGAAATCTGATGAAGTAGAAAAAAATAAAACGACTCGTCGCGGTAAAGTGAGGCTGAAGTGTAACCACTGTGACAAGACATTCGGTAGTAAACAGAGCAAGTCCGTGCATATTAAGGCGACGCATCAAGGTGAGCGCGCGCACGCATGCGCAGTGTGTGGCGCGCGCTTCGCGTACCCGCGCTCGCTGGCGCTGCACGCGCTCGTGCACCGGCGCGCGCGCGCCCGCTCCCGCGCCGCCGCCAGCGCCTTCGCCTGCGACCTCTGCGGGAAGTACCCGCGCTCGCTGGCGCTGCACGCGCTCGTGCACCGGCGCGCGCGCGCCCGCTCCCGCGCCGCCGCCAGCGCCTTCGCCTGCGACCTCTGCGGGAAGTACCCGCGCTCGCTGGCGCTGCACGCGCTCGTGCACCGGCGCGCGCGCGCCCGCTCCCGCGCCGCCGCCAGCGCCTTCGCCTGCGACCTCTGCGGGAAGTACCCGCGCTCGCTGGCGCTGCACGCGCTCGTGCACCGGCGCGCGCGCGCCCGCTCCCGCGCCGCCGCCAGCGCCTTCGCCTGCGACCTCTGCGGGAAGTACCCGCGCTCGCTGGCGCTGCACGCGCTCGTGCACCGGCGCGCTCGCGCTCGCTCCCGCGCCGCCGCCAGCGCCTTCGCCTGCGACCTCTGCGGGAAGGTAACGCCACACCCGACACCCCCACACCCCCCAACACCCCCACACCCCCCAGTACCCGCGCTCGCTGGCGCTGCACGCGCTCGTGCACCGGCGCGCTCGCGCTCGCTCCCGCGCCGCCGCCAGCGCCTTCGCCTGCGACCTCTGCGGGAAGGTAACGCCACACCCGACACCCCCACACCCCCCAACACCCCCACACCCCCCAGTACCCGCGCTCGCTGGCGCTGCACGCGCTCGTGCACCGGCGCGCTCGCGCTCGCTCCCGCGCCGCCGCCAGCGCCTTCGCCTGCGACCTCTGCGGGAAGCGCCTTCGCCTGCGACCTCTGCGGGAAGGTACTAAACCACCCTTCTTCCGTGGTGTACCACAAGGAGGCGGAACACGCGGGCCAACGGTACGTGTGCAACAAATGCGGTAAATCGTTCAAACACAAACAGTTACTGCAACGACACCAGTTGGTCCACTCACAGGACAGGCCCTACAACTGTAAGCTGTGCAACGCGACCTTCAAGACGAAAGCGAACCTGTTGAACCACTCTCTATTACACTCCGGTGTGAAGAAATTCTCGTGCGAGTTATGCAAGCACAAGTTTGCACACAAGACGAGCCTCACACTGCACATGCGATGGCATACCGGGTTAAAGCCGTACTCGTGCACGACGTGCGGCAAGAGCTTCAGCCAGAAGGGCAACCTGTCGGAGCACGAGCGCATCCACACGGGCGAGAAGCCGTTCCAGTGCAGCGTGTGCCCGCGCCGCTTCACCACGTCCAGCCAGCACCGCCTGCACGTGCGCCGCCACGCCGCCGACCGCAACACCCACGCGCATGCGCACCACAACAACAGGTACATCCACACGGGCGAGAAGCCGTTCCAGTGCAGCGTGTGCCCGCGCCGCTTCACCACGTCCAGCCAGCACCGCCTGCACGTGCGCCGCCACGCCGCCGACCGCAACACCCACGCGCATGCGCACCACAACAACAGGTACATCCACACGGGCGAGAAGCCGTTCCAGTGCAGCGTGTGCCCGCGCCGCTTCACCACGTCCAGCCAGCACCGCCTGCACGTGCGCCGCCACGCCGCCGACCGCAACACCCACGCGCATGCGCACCACAACAACAGTAGGGTCCCACGGGGGGCGTGGTCGACAAAACCGCGGCGTGGCGGGGCGAGCGTGGGGGCGGGCGGGGCCGGCGCCGGGGCGGCCGGGGCGGGGGCCGGGGCCGGCGCGGCGGGGGCGGGCGGGGCGCACCGCTGCGGCGCGTGCGGGCGCGGCTTCGCGGAGCGCTGGGCGCTGCTGAAGCACCAGCGCTGCCACTCGGGCGAGCGCCCCTTCCGCTGCCCGCACTGCCCCCGGGCCTTCGCCGACTGCTCCAACCTCAATAAACACAAGAAGCAAGTCCACAAACAGATCAGTCTGCTCGCGAACACGAACCAACAACCGGTGCTATCTCCAATTATACCAAAGATAGAACACCCAGACTCGCCACAAATACACGTGGAGATGGACCAGACCATCGCCCTCCCGGAGACTTCGACCGTCAAGCTGCTGGACGAGAGCCAGGACGAGCTGGAGGAGCGGGTCATATTTGTCACGTATGACGTCGACGATGCTGACACGACTGCCTTCCATATAATAGACCCTGAACAGGCGGCAAGTTTTACTGACGGGAAGGTGACAACGTGTGAGTTGTACTCGGGCCCGTCGCTACTGGTGCCGCAGCCCGAGTACGAGCAGCTAGAATTACTACAGGAGCAGCCGTTGCAGCTGCAGGACGAGCAGCTGGAGCTGCAAGAAGAGCAGTTGGAGCTGCAGGATGAGCAGCTGGAACTGCAGCAAGAGCAGCTGGATCAGGAGGAGCTCGACCCACTGTCGGATCTCATCCCGGACGGACACCGGCAAATGCCTGTTACAGATGAACAGGGCAATCCCTTACACTTCACGATGCAGGATGGTACGCGGCTCGCGATCACGTCTGCCGACGGAAAATCTTTACAAGTAATAACACATGATGGCCAAACAATACCGGTTGAGATTAATGGATACGCAGATGAAGAGGAGGTTGACAACCCAGACACGATCGTTCATCAGCTCAACTTACAAAAGAGTGTCGATGCCAATGCGGGGTCTCCTGTTACGCATTATTTTACAATTGTTTAA
- Protein Sequence
- MEVFLYNSTVCRLCGEENDNGTLLYLSEENSQNLSELINTYLPIKVSDDGQLPRTICPGCTIQLEATVEFLTLIINGQKIIRDLHLREKEYKKTILNPTHEEDIITENIIYEVNTSNGVYQVEHPIALQVAGLEKPKRKRGRPPKKPKTPEELAKEAAAKEQEVKNAKKYDKDDEPSGKRRRKTPTRFKEAVQGKELERIFKEEGVTDGEDSEPEVKVDVSQGVKVPVSKEPQIIGHLEESGELVVMVKGKGRGRPRGPMHTSRKECGICGMEFTCKGRYMSHVAQHGQVLYQCVECSDTFTTRLDFNSHQKESGHSGQNIIPCKKNNEKTKTKKSEILETTTITDEPQPVKHKSPSVQNIDNVILPLPNSLPDLNPEPIVVDDIVPSVEFQLKTDSATIEVPTNTTADNVVKIDDPTQDTAVEEKSDEVEKNKTTRRGKVRLKCNHCDKTFGSKQSKSVHIKATHQGERAHACAVCGARFAYPRSLALHALVHRRARARSRAAASAFACDLCGKYPRSLALHALVHRRARARSRAAASAFACDLCGKYPRSLALHALVHRRARARSRAAASAFACDLCGKYPRSLALHALVHRRARARSRAAASAFACDLCGKYPRSLALHALVHRRARARSRAAASAFACDLCGKVTPHPTPPHPPTPPHPPVPALAGAARARAPARSRSLPRRRQRLRLRPLREGNATPDTPTPPNTPTPPSTRARWRCTRSCTGALALAPAPPPAPSPATSAGSAFACDLCGKVLNHPSSVVYHKEAEHAGQRYVCNKCGKSFKHKQLLQRHQLVHSQDRPYNCKLCNATFKTKANLLNHSLLHSGVKKFSCELCKHKFAHKTSLTLHMRWHTGLKPYSCTTCGKSFSQKGNLSEHERIHTGEKPFQCSVCPRRFTTSSQHRLHVRRHAADRNTHAHAHHNNRYIHTGEKPFQCSVCPRRFTTSSQHRLHVRRHAADRNTHAHAHHNNRYIHTGEKPFQCSVCPRRFTTSSQHRLHVRRHAADRNTHAHAHHNNSRVPRGAWSTKPRRGGASVGAGGAGAGAAGAGAGAGAAGAGGAHRCGACGRGFAERWALLKHQRCHSGERPFRCPHCPRAFADCSNLNKHKKQVHKQISLLANTNQQPVLSPIIPKIEHPDSPQIHVEMDQTIALPETSTVKLLDESQDELEERVIFVTYDVDDADTTAFHIIDPEQAASFTDGKVTTCELYSGPSLLVPQPEYEQLELLQEQPLQLQDEQLELQEEQLELQDEQLELQQEQLDQEELDPLSDLIPDGHRQMPVTDEQGNPLHFTMQDGTRLAITSADGKSLQVITHDGQTIPVEINGYADEEEVDNPDTIVHQLNLQKSVDANAGSPVTHYFTIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -