Alep002207.1
Basic Information
- Insect
- Acronicta leporina
- Gene Symbol
- -
- Assembly
- GCA_947256265.1
- Location
- OX366537.1:8088954-8115174[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 4.2 3.2e+02 2.5 0.9 3 14 58 69 57 73 0.81 2 12 0.012 0.95 10.5 0.4 1 23 550 572 550 572 0.96 3 12 0.00018 0.014 16.2 0.2 1 23 586 608 586 608 0.97 4 12 4.5e-06 0.00035 21.3 0.8 1 23 614 636 614 636 0.99 5 12 1.6e-05 0.0012 19.6 2.4 1 23 643 665 643 665 0.99 6 12 3.6e-06 0.00028 21.6 0.4 1 23 671 693 671 693 0.93 7 12 7.2e-07 5.6e-05 23.8 0.1 1 23 699 721 699 721 0.98 8 12 3.3e-06 0.00025 21.7 1.0 1 23 727 750 727 750 0.96 9 12 0.00011 0.0084 16.9 3.6 1 23 756 779 756 779 0.96 10 12 2.6e-05 0.002 18.9 3.3 2 23 786 807 785 807 0.97 11 12 4.4e-06 0.00034 21.3 1.2 1 23 813 835 813 835 0.97 12 12 0.055 4.2 8.4 0.4 1 22 841 862 841 866 0.94
Sequence Information
- Coding Sequence
- ATGAACCAGTGTTGTTTTATCTGTAGCAACAGGGCTGGCCTTTCACTGAGGAATGCTACCAGTTTATTCGGAGAACATAACACATTAACATCAGGGAAGAAAGTTTCAGAAGTTCTGAGTGAGATTTTAGGAAAGCCCATACAAGAGAACAAGGTTCACTCCAGTATATTATGCAAGAAGTGTCACAAGTCTTGTGCCGAATATGACTCTATGCAAATCAGGTTAGAAGCTATAAAAGCTGAATTACAAGGCCTATTCAAACTATCATTGCCTATTTATAATTTGGACTATGATAACTATGGGAAGAATTCGGCTGAGTCTCCACCGAAGCCAAAGACTATTGTGGGGAAGAAGTTGGTGTTACCAGCGTCGAAATTACAACCAATACCACCAGATTTGTTGCTCAAAGTTGGGAAATTGGCACCGTTTGCCAAGTCAAACATTACATTACCGCATTTAAAGCCCACAGCATCAACTTTAAACCTAAAAGTTACAGTTGGATCTTCAGTTCTAACACAAACCATTAAAACTACAAATAGTAAGCCAGAAAAACCAACAGACGCGAATGCCATTCTAACATCTCTGACAAGCTCCTTACGAGATGACATTGACAGTATTATTACAACTCAAAGCAATATTGGCCAGAAAAACTCCATTTTGAGTTTCAATACGTTGCCAAAAGACTTCCTTGCTGGTGCAGTTCTCATGAAGGATGAAAAAGACATTGAAGAAAGTAAAGTGGATAAGAATGATGAAGACTCCATGGCGATTGATGAAGATTGTATGTCCGTGGTACCGGTTGCGACGGATGAGGGCGGTAACCTAGTTTTACAAATCAATGGACTCCAATCAAAATCTGAGAAATCTCCGGAAGTGAGCGAGTACTTGAATGTTGATATGCCGTCGCTAGATGACGTTGAGGAAGAGACTGACGCTCAGAAGTACATACTGGGTAAGCTGGAGATCCTCAACGAAGCTGATGATGATGAAGACGACGAAGATGGACATACAATAGTATTGGACAGTGAGAACGGCTCCATCCTACAAATGGTAGCCGGTCAGAAGTTTATATATGAGGGCGGAGAGATCTCCCTGGTGATGCCTGACAAAGATGATCAGCAGGAAGATGGTGATGGTGATGGAGAACAACACGACAACGGTGATAGCCAAGGCAGGATTCGAACCTGCGTCTTCTGGTTTGATACACCAGACGCTATGACCACTAAGCCACCGCGAGTCCTACCTGCCATGTCGAAATTTGCCTTCACATTCTTCAAACCAGAAGACGCAGATTCAAATGACGAATCGCAGATAGAACTACAAGTATCCGGTGATGAGGATATTGCTAACGCCATCATCGCGGCCGCACAAGAACAAGGTGGTGCGTTCATAAAAGTGGAGTCGGGCGAGATGTATCGCGTCAAGTCGGTGTCCAGCACGACTAGCGCGACCGACGCGACAAACGCGACTACTACGACTAACGCGACGACCGACGCTAGCGACATGACGATGCAAATCGTAGTACAAGAGGGGAACCTGTTCAAATGTCTGCTGTGTGAGAAAAACGACCTTCCGGACAGCAGCCCTTGTGTAAGCGACGCAGACTCCATGATGCAGCATTTGAAAACTTCACACGATGCTAGGTTATATATATGTCAGTTCTGTGGAACTGTCATGAGAAGACGGACAGACTACACTACACATATAGCGGAGCACGCACAAAAGCTGAAGCCCAACGCGGCGCGAGCGGCCACCCATCGCTGCGGCGTGTGCGGCAAGTCGTACAGCAGCCGCGCGCTGCTGGGCGAGCACGCCAACGTGCACTCGGGGGCGCGGCCCTACGTCTGCAATATCTGCAATAAAGCATTCGCTTCCAAGTACACGCGCCAGGCTCATCTTAAAACTCACGCCGTTCGACCACGCCCGTTCAAATGCAGTCAGTGTGGCAAATCCTTCTTAACACAACAGAATCTAAATCAACACGAGAAAACTCACTCCGGAGTCAAAGATTTCGTCTGTAATGTATGCAACAAAGCATTCAGTACGCAGCACAACTTGGAAGTCCACGGCGTGGTGCACTCGGGCAACAAGGCCTTCGTGTGCAGCGCGTGCGGGAAGGCCTTCGCGCGCCGCGCCGAGCTGCGCGACCacatgcgcgtgcacaccgGTGAACGTCCGTTCTCGTGTGACATCTGCGGCGCGAGCTTCGCGCAGCGCTCGAACCTGCACTCACACCGCCGCGCCACGCATCTTGACGATAAGAGATACCACTGCACGCAATGTCCAAAGAGATTCAAGCGAAGAAGGTTGCTCGAGTACCACATAAAGGCGTCGCACACCGGCGAGCGGCCGCTCAAGTGCGAGTTCTGCCACTGGTCCTTCGTGTACCCCGAGCACTACAAGAAACATATCCGCATACACAGCGGCGAACGACCTTATGTTTGTGAGATCTGCGGCAAGTCGTTCAACTCCCGCGACAACCGCAACAAGCACCGCTTCGTGCACAGCGACAAGAAGCCGTACGAGTGCGTCGCGTGCGGCGCCGGCTACATGCGCAAGCAGCTGCTCTACCACCACATGAACACCAGCGTACGTCACCACCACCACCACATATTCACACCACACCACATCACTAAACACCACCCCACTACATGA
- Protein Sequence
- MNQCCFICSNRAGLSLRNATSLFGEHNTLTSGKKVSEVLSEILGKPIQENKVHSSILCKKCHKSCAEYDSMQIRLEAIKAELQGLFKLSLPIYNLDYDNYGKNSAESPPKPKTIVGKKLVLPASKLQPIPPDLLLKVGKLAPFAKSNITLPHLKPTASTLNLKVTVGSSVLTQTIKTTNSKPEKPTDANAILTSLTSSLRDDIDSIITTQSNIGQKNSILSFNTLPKDFLAGAVLMKDEKDIEESKVDKNDEDSMAIDEDCMSVVPVATDEGGNLVLQINGLQSKSEKSPEVSEYLNVDMPSLDDVEEETDAQKYILGKLEILNEADDDEDDEDGHTIVLDSENGSILQMVAGQKFIYEGGEISLVMPDKDDQQEDGDGDGEQHDNGDSQGRIRTCVFWFDTPDAMTTKPPRVLPAMSKFAFTFFKPEDADSNDESQIELQVSGDEDIANAIIAAAQEQGGAFIKVESGEMYRVKSVSSTTSATDATNATTTTNATTDASDMTMQIVVQEGNLFKCLLCEKNDLPDSSPCVSDADSMMQHLKTSHDARLYICQFCGTVMRRRTDYTTHIAEHAQKLKPNAARAATHRCGVCGKSYSSRALLGEHANVHSGARPYVCNICNKAFASKYTRQAHLKTHAVRPRPFKCSQCGKSFLTQQNLNQHEKTHSGVKDFVCNVCNKAFSTQHNLEVHGVVHSGNKAFVCSACGKAFARRAELRDHMRVHTGERPFSCDICGASFAQRSNLHSHRRATHLDDKRYHCTQCPKRFKRRRLLEYHIKASHTGERPLKCEFCHWSFVYPEHYKKHIRIHSGERPYVCEICGKSFNSRDNRNKHRFVHSDKKPYECVACGAGYMRKQLLYHHMNTSVRHHHHHIFTPHHITKHHPTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -