Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 7.8e-05 0.082 13.4 0.0 6 44 22 58 18 58 0.88

2 4 3.1e-11 3.3e-08 33.8 3.2 3 44 148 188 146 188 0.96

3 4 2.4e-08 2.6e-05 24.6 6.2 3 43 247 286 245 287 0.93

4 4 0.92 9.7e+02 0.3 7.8 3 43 300 342 298 343 0.80

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	7.8e-05	0.082	13.4	0.0	6	44	22	58	18	58	0.88
2	4	3.1e-11	3.3e-08	33.8	3.2	3	44	148	188	146	188	0.96
3	4	2.4e-08	2.6e-05	24.6	6.2	3	43	247	286	245	287	0.93
4	4	0.92	9.7e+02	0.3	7.8	3	43	300	342	298	343	0.80

Coding Sequence: ATGCTCGTCCCGACAAAAAACTGGATGCATATCGGTGAACAATACCTTGAATGGGCATCTATATATTTTGTTAAAGCCACAGAAACCGAGATGAAATGCAATCTATGTGATATTAGTCTGAAAGCTGAAGAAAAATCACTAGAACTTATAGAGCATTTGAAAATTGACCACAAAGACATATATGACCTTCACAAGGACAACCCAGAGGCAACAGTTGGTTTTCGTATAGAGTTTTTGAATATAAATGTATTGAAGGATGATGGAGATCCAAAAACACAGCCTGTTATGCTAGGGGAGGTTTGTGAAGCTACAACCGAACCTCTTGTTCAGAAGGAAGAAGAAATCACAGTAAAACCTGATGATCCTAACATGCATTTTGTTATTTTGGATGGAAAGAAGAAAATAAAGCGTGAGAATCGTGGGCCACGCAAGCGCAGCTGGGTGTGGAAGTATTTCGACAGGCTCAGCAACATCATCTACCGTTGCAAGTTATGCAATGTAGTGCTGTCCATCAAGGGCTGCAACTCCAATAATATGAACCGTCATGTCAAGTCAAGGCATCCCACGGTTTACAAGAGTGAGGCGACAAAAGGAGAGAGGGTGGACAGCTGTAGTGTCCAAGTGCTACCCAGCGAGGCGGATCCACCATATGTTATTAAGACAGAGGAGATTTATGCCAGTGATCGAGATTTTGAGGAAGTTACAGAGAGTCCAACGCAGAAGCTCCGTCGCAGTTGGATCTGGTCGTACTTCGAGCGCGTGTCCACTACGCAGGCGCGCTGCAAGCTGTGCGAGCGCCACATCTGCCACGGAGGCAATGCCACGGGCAACATGAACAGACACCTCAAGATGATACACCACAAGACTGCTCGTACTAGAACATATGACCAAAGCTGGGTGTGGAAGGTGTTCGAGGCGTGCGACACTGAATATTACACCTGCAAGATATGCCAGCACAAGTGTATGAAGTGCAGTGACATCGACAAGAGCATGACCGGTATTCTGAACCATCTCAAACTAGAACATGGGGTTATCTCCGGTGATCAGATTATCACCGGAGCGGATGTTGAGACCGATGATGTTATTGCTTAG
Protein Sequence: MLVPTKNWMHIGEQYLEWASIYFVKATETEMKCNLCDISLKAEEKSLELIEHLKIDHKDIYDLHKDNPEATVGFRIEFLNINVLKDDGDPKTQPVMLGEVCEATTEPLVQKEEEITVKPDDPNMHFVILDGKKKIKRENRGPRKRSWVWKYFDRLSNIIYRCKLCNVVLSIKGCNSNNMNRHVKSRHPTVYKSEATKGERVDSCSVQVLPSEADPPYVIKTEEIYASDRDFEEVTESPTQKLRRSWIWSYFERVSTTQARCKLCERHICHGGNATGNMNRHLKMIHHKTARTRTYDQSWVWKVFEACDTEYYTCKICQHKCMKCSDIDKSMTGILNHLKLEHGVISGDQIITGADVETDDVIA

Sequence clustering based on sequence similarity using MMseqs2