Ains004850.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Acromyrmex insinuator
Gene Symbol
-
Assembly
GCA_017607455.1
Location
JAANHZ010000191.1:175600-185750[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.026 1.3 8.7 0.2 3 23 453 475 452 475 0.94
2 10 0.0015 0.077 12.5 1.4 1 23 481 505 481 505 0.98
3 10 0.00014 0.0071 15.8 0.2 1 23 511 535 511 535 0.97
4 10 8.6e-05 0.0043 16.5 0.1 3 23 543 565 541 565 0.93
5 10 4.4e-05 0.0022 17.4 1.7 1 23 572 596 572 596 0.97
6 10 6.6e-05 0.0033 16.8 0.6 2 23 604 627 603 627 0.95
7 10 3.2e-06 0.00016 21.0 2.0 1 23 633 657 633 657 0.98
8 10 3.3e-06 0.00017 20.9 0.5 1 23 663 687 663 687 0.97
9 10 4.7e-05 0.0024 17.3 0.9 1 23 693 715 693 715 0.99
10 10 0.62 31 4.3 0.1 1 23 793 818 793 818 0.95

Sequence Information

Coding Sequence
ATGTCTTGTAAAGGAACTGCCGCCATCACCGCATGTACATCCAGACGACATAGTCGCGAGAGGATTAGTTCCGAGAGCGAAGGAACGGAATACGTACCTGTTGATGCTCTTTTTGCTTCATCGAGAACGGAAGAGGTCGGTAAGAGGGATCAAAGAACAAGAAGAAATGAGAATTGGCAACAAACGGTGACTGGAAAAGGTGTTGACGTCGTTGAGACGGTAGCTGACTTTGAGAAATGGCTTAAGATGCGTAGCACGGAACCGCCGGTGCCATCAAGTATGGACTTGGACGCAACCAAGATGGTAGAAGGCGTAGATAGATATCTGGGTGAAGAGGTGCTATCACATGGCTGTTTTCTGAGCAAAGATCCATATGGTCTGTCCATCGACATCGATTTGGCAGACACTAAGAAGCTTAATCTGTCGTCAAGTTATGATCCAATATTACAAGATCTGACGCACAGCGATAATCGATTACTGGAACCACCATGCGAGAAGGTCGTCGACGAGTTTATACTACCAGAGTTCCAGCTGGATCATTTGGATCCACTAGTGACTCTCACGCCGGATGATATGATAGTAGCTGGTGAGATTCTGCCGTCTGCGAGCAGCCAGTCAATGATAAGTGTAGAAAATCACGATGTCGAACAAAATACTTCAAAAATAGGAGTTCCTATGCAGAACAATGAGACACCCTGTGAGAAATCCACACAGGTTACTCTCAATCAACTACCAGTGAATATAGTCGTAAACAAAATagaggaagaagaaataaagatagaaCAGGAAACTGTAGTACAATCTTCGTTAAATTCTTCGGAGCTCTTCATTGGGACTCTACCATCGATGGAGGAGAGTTCATCAAATACCATGACAAATTCCATGGAAATAGATACACACGGTATGGTAATAGAACAATTGAAGAAGACGAAACTCGAACCTCGTATTATCAAGAAACGTCGACAAATGACAGAACGAATAGAGAAGAAGTTTGATAAGCATATTAATGGCAAAAGCTTTGCCGTTGACACAGACTCACAGGATGGCATGATGGCTGTAGTCGCTATATCTACTGACAAAACCTCCAACATGACACAGATTGTTATCAATACTGGCACAGAGAAACAGATCTATCAAGGCAAGACTTCGGAATTGATTGAAGCAACAGgcaattttccaaaattgccCAAGATAGATACTTCGGCCACAGTTTGGAATGGCACAGTTGAATACGGTACCGATAATAATCCAAGTAATCAATATGAAATTGTTATATCCAATGCACTGGAAGAATTAGGTATCACCGACGATAGCCTGCAACCTTTGTGCGCCACCGAACACGACAAGGTGTGGCTCTGTCCACGAGACGGCTGCAACAGACAATTCGGTAGATTGTACACTCTGAAGGGTCATTTGTTGGCCCATTATGGAGTTAGACCGTTTaagTGCGACTTTGAGGGCTGCACTTGGGCCTTTTATTCAGAGTTCAAGCTGAAAAGACACAAGGAGACACATCTGAAGCGCAAGGATTATGTGTGCGAGGTGGAAGGCTGCAATCGTCGTTTCACTACCGTCTACAATCTATGGAGCCACGCGAAGTTGCACAATCGTCCCAATCGAATCGTGTGCCAGGTGCCAGACTGCGGTGAGAAATTTCAGACGAAACGAGCATTGGAACTACACATGAAGTCGCACGACCAACGCCATGCACCTTATGTGTGTCAGCATGAAGGTTGTGGCAAACGTTACTACAGTAGCAATGCATTGACGTCTCATCAACGATCACATAGCTATAAGGAAGTGGATATCAAGTGTTCATGGCCGGGTTGTGGCAAGATTTTCGACAAGCCTTGCCGACTCAAAGCACACATGCGGTCTCATACCGGCTATAAACCATATCCTTGTACTTTTCAAGACTGTAAATGGGCTTTCTCATCATCCAGTAAGCTTAAGCGCCACCAAAAGAAGCACACGAACGAGCGTAAATTTGTGTGCGACGTGCCGGATTGTGGCAAGGCATTTATGCGCTCGGAACATCTGAAGGAGCACCGGTTAACACACACGGAAGGCCGCTTTTTCCAATGCTTCGTGTGTGATGCCCGATTCTCTGCCAAGAGCAGCTTGTATGTACACATCAAAAAACATCAGCAGATTAAGCCTGAAAACGTAGCCAATGATATGTTTGAGCGCACTTCTGGTAATCAAAAACGTACGAAAACAAAAGAATCTCATTATTCGCGAGTGAAGCCGTCAAGCAAGTCGAAGCGATGGAACACGGAACTGATAAATGCCGCAGAGATTATCGCGAAGGAAAACGAAATTGAGAAGCAGAGTGCCAGTACATGTTCCCAGGATGAGGACCAAATGGAGTGGCTGTATCGTTGTCCGATAGAGATATGCGGACATTTAATCAGCAGCGAAACGATTCTTCGTGAGCACATGTTAAAAGTACATGGCATACAATGCGACGATTTATTGACTAAACCGTCTTCGAACGATGTCGATATAGATTATGTTTTATGTACCGTGCACAGTTCGCCAAGTTCATCCACTATCGTCGAAGAAGAACAAATGGTCATGGTGACTCCGTGCGATGCCGTTATTCTTGATACCTTCTCATCAAAAACAGATCATTGTTTGCCAGAACCGGAACCCCCACCTTTCAATACCTTGCTGAAGAGCTCGGAATCATTCCAAAATGAGCAGATTAACAAGGAAACTGTATCAGTGAAGGAGCAGGGTTCAGCAAGGACAGATCTAACATATTCTGATTGGTCTAAATTGAAGAAGGACAGTACATTGACGAATTCGATAATAACGGAAACGTCGGACATTGTATTGGGCACAAGTGATGATTTGAGCGAAGGTCTGTTGCTCACAGAAGAGCTACCGTCGATGTACTATCAGGACGATGTGGCAGACTGA
Protein Sequence
MSCKGTAAITACTSRRHSRERISSESEGTEYVPVDALFASSRTEEVGKRDQRTRRNENWQQTVTGKGVDVVETVADFEKWLKMRSTEPPVPSSMDLDATKMVEGVDRYLGEEVLSHGCFLSKDPYGLSIDIDLADTKKLNLSSSYDPILQDLTHSDNRLLEPPCEKVVDEFILPEFQLDHLDPLVTLTPDDMIVAGEILPSASSQSMISVENHDVEQNTSKIGVPMQNNETPCEKSTQVTLNQLPVNIVVNKIEEEEIKIEQETVVQSSLNSSELFIGTLPSMEESSSNTMTNSMEIDTHGMVIEQLKKTKLEPRIIKKRRQMTERIEKKFDKHINGKSFAVDTDSQDGMMAVVAISTDKTSNMTQIVINTGTEKQIYQGKTSELIEATGNFPKLPKIDTSATVWNGTVEYGTDNNPSNQYEIVISNALEELGITDDSLQPLCATEHDKVWLCPRDGCNRQFGRLYTLKGHLLAHYGVRPFKCDFEGCTWAFYSEFKLKRHKETHLKRKDYVCEVEGCNRRFTTVYNLWSHAKLHNRPNRIVCQVPDCGEKFQTKRALELHMKSHDQRHAPYVCQHEGCGKRYYSSNALTSHQRSHSYKEVDIKCSWPGCGKIFDKPCRLKAHMRSHTGYKPYPCTFQDCKWAFSSSSKLKRHQKKHTNERKFVCDVPDCGKAFMRSEHLKEHRLTHTEGRFFQCFVCDARFSAKSSLYVHIKKHQQIKPENVANDMFERTSGNQKRTKTKESHYSRVKPSSKSKRWNTELINAAEIIAKENEIEKQSASTCSQDEDQMEWLYRCPIEICGHLISSETILREHMLKVHGIQCDDLLTKPSSNDVDIDYVLCTVHSSPSSSTIVEEEQMVMVTPCDAVILDTFSSKTDHCLPEPEPPPFNTLLKSSESFQNEQINKETVSVKEQGSARTDLTYSDWSKLKKDSTLTNSIITETSDIVLGTSDDLSEGLLLTEELPSMYYQDDVAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00128451;
90% Identity
iTF_00182797;
80% Identity
-