Basic Information

Gene Symbol
Trerf1
Assembly
GCA_017607455.1
Location
JAANHZ010000421.1:1601568-1766634[+]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 4.5 2.7e+03 -2.4 0.2 29 42 1114 1127 1112 1128 0.88
2 2 3.8e-10 2.3e-07 29.9 0.0 2 46 1280 1324 1279 1324 0.96

Sequence Information

Coding Sequence
ggTCCGGTCGGAGAGGTGGGCGGCGTGAGGCTGCCACTGCAGTCACTACATGGATACGGATCTGTGTTCATGTACTCGGCGTCGACGAGTCCCGGGGGTGGAGGTGGCCAGAGTAGCGGAGGCGGGGGTGAAGTCACTCTCCGCCTCCGCGAACCCGAGGACATTCCCGAAGAGGTCCTCGCCCGCCTCGAGGACACCGCCAccctctctatctctcttcaAAGCGATGCAGTCCTGAGGCTAGGGGCGGCTGGCGCAGGAAATGGGAACTTAGAGTTGTTTGATAGTGAGAGCGGGCCGGACCTCACGCTATCACCTCAAACCTTCACGTCAACGGCGGAGGCCTTCATCAATGACAATAGCGACAGTCTCGGGGTTCCAGGAGACAACGATACCGGTAGCAGCGAGGAATCGAGGGCCGGTGGCGGTGATCCTGGGAAGCTGGGAGTGAAGAAATCGAGACTGAAGGCCTCCTCGCCGAACAGGCAGGGACCACAGCAGTGTCAGATCTGCGGGAAGGTGTTCAACAATGCATCGGCGCTTACGAAGCACAAACTGACGCATAGCGACGAGAGGAAATACGTGTGCACGATGTGCGGCAAGGCGTTTAAACGGCAGGATCATTTGAATGGACACATGCTGACACATCGAAATAAAAAGCCGTACGAGTGCAAAGCCGAAGGATGCGGCAAGTCTTATTGCGACGCGAGGAGCCTGAGGAGGCACACGGAGAATCATCATGCCGGCAGCAAAATCAATGACATCATCGGTCCTTGCAGCCCCACGACCGGACCTCATACGCCGAATACCCCCGGAAGCAATCCCAGCACACCAAGCACACCTGGTGCAACCTCCACAACGAATGGTCACGGGCACGCGGCCTTGAAGCAGCTTCTTTCCACCGAACCCGCGCAAACGCAACAGCAAAAGagcGCCACGTCTCCCGGTGCCAGTAACGATGGCCTCACGAAACAACAGCTGGAGCTCATCCAGCAGATCATGCAGCAAACGCAACAGCAGACAACCacgcaacagcagcagcaacagcaacggACCGCGACTCCCTCGGCATCGGTAGCCACACAAATACAAAAGACACAAAAACCGTCCATCAAATCCACCGCGTCGTCCGGCAATATTTCCAACAATTCCGCAAGCGGAAACGCGACCAACAGTGCGAGATCGAGTCCAAAACCGAAGATGTGGAATCATTCGCATcaacaacagcagcaagCGCAGCAGCAGgcgcagcagcaacagcaacaacagcagGTCGGCTCGCCGGGAAGCGGAAATGTAGGGAAGGGCAGTCCATCTCCCGGTAATTCGTCTTCCCCCGGAACGGTCACTACTTCCAACAAGACCCAAACGGAACCGAAACCGGTGGAGTGCAATCTGTGCcatcgaaaatttaaaaacataccGGCCCTTAATGGCCATATGCGACTCCACGGTGGTTACTTCAAAAagGATGCGGAGAACAAGAAGAGTGAGAAGAAAGAGGTCGTTGGGCCACCTCTGCAGACGGCGTCCGTCAGCGTGAGAGCGCTCATCGAGGAGAAGATCATACAGAAGAGAACGACAGCAGTGGACGCGAATGGCAATCAGCAACCTCGTACTACCGCTTTCACCACGCAAGCCGATGCCGTTTCGCAAACCGTCGTCAAGACGAATTTTGCGATTCCGGCTCCGCCGCCTTTGGCGGCGGGGGAAAAGGTGCGTCGGTTTTCTGATGGTGAACACTTCCGGCAGCCCAATGTCACCGTGGGCCACACAACTGTACAGAAACACTTGCAGGAAACATCCAAAACTCAAGCTCAAGCACAAGCGCTTGCCGATATGATCCTGAAGGGTACGAAGGTGGCTGTGAAGAGAACAATCTCTGATCCGGGACAAAGATTACACTTGACTTATCAACAGCCTGTACAATCAGCGACGACCAACCAACAACCAAATAATCAGCAGCCACAAGCACAACCTGCGGTAACAGAAAGCTTTACGATGACAGGATACGCTGAGGACGGTGGTTACTTCAGCCCAAGTCTGCAGGACGAAGTATTTCAACAAGTTACAACGGTTCCTGATAGCGTACTCCTACATGCTACCCACTTGGATTCGATTCAGTTTCAGACGGCCAATCTGTTGCAAGAACAATCTACCGAACAGCTGCAAGATATCACACTGGAGGACAGATACTCCTCGCAGCACACAGTCAATCCAGATCTTCAAGCGTTGGTGAATTCGCCGTTACCCGATTCCCTGGCTGAATTTAGTACTTACGCCGCGCAATACACGGAAAGTCCTCATACGTTACCAACTCAATCACCCCTACCGTCGCCTTTAACGCGGCACGATAGCCCGAGCTTTACGTACCCAACGCCACCGGCCAGCCAGGAAGGCTTGCTCACCGGAAGCCTGCCGCTATTAAGTCCTCAGGAAGATCCGGAGAACGTGAGACACGTGTCATCGCCGCTTTCGGCGGCATTTTACACTACCACGATGTCATCTGCTGCAGCCGTAGAGGAGGCGTTGAACGAAGTGTTACCGGGTGAATCCGAGGCAGATGCGGACCTTTATGGGTCCGGTTCGCCAAATCCGCACTCGCCACTGCCAAGCCCGTTGTCGGCGACATCGGCGCCGTCGCCGCTGCCACCGTCCTCTGTCTCGTCGCCGGGACCGGTTGCCTTTACGGGCACGAACTTTCCCGTGTCGCCGCATAATGCGCTTCAAAATCAGATGATGCCGAACTCGGAGGATCCTTTGCTTTCCTCGACCTCGAAGGACTTTGCCGCCTCCGGTCGTAGACGATTCGAGTTTCAATCGTACAAAGTCATCACGAGCCAAAACTTGATGGACTTCGGTCTTGGAAACGGTAGTGTAGCTGGTATCGTCGTTGACAACAACGGCGACGTCAAACTGATACAGACAGCGGGTCTGCAGAAGGCGAATGTGTACGTGCAGGCGGGTTCTCTCAGTCCTGCGCTGACATTCAAGAAGGAGATCCGCCTAGCAACACCAAAAATCGAACCCGTGACCGTAAATCTCGGCCTAAACGTTCAAACGACAAATCAGCAGCAGTGCAACGCGAGTCAGTTTAATCAACAGCAAATTGTTAACCCggccaaattttttattcaaaataatcacACGACGAAAAACAATATCTTGAGACATAAAACAGTCACCGGAAATTTACCGATACCCATCGATCAGATTAAACAGGAGATGTTAGATGAGGACGTGTTTCTCAGTCCTGGTAGTTTACCCGCCAGCAGCCCTGTGCGACACTATCGAAAGAGGCCACGCATGGATAGCGGCCAGTACACCAGCAGTTCACATTCTTATCCATCGCGTTTGCGAAAAGCTTGCGACCGCCACTGGGATAGCAGCTACACACCGCCACCAATCCTAGACCCATCTCGTCCCGGTCCGGGGCTGTACGCGAGATTGCATCAACACGAGAGAGACTCGGACTTTAGCTCAGACGATTCTCAAGGAAATGACGGTCCACCGCCAAGAATTAATATCGGCACGAGATATCAAGCCATGATACCTCCGGTGGAGTATGACGGAGACAGAGGAAACGACGGACCCGAAGCCGATCATCTTCTATGGGATCCCGGCATAAACAATGTGCTTACGAACACTGAATTGGAGATGTACCTGCAGTTCGCGTGTTGCGCAGCGGTGCCGGGTGGTGGTAGGAACAAGGAATATGCGCTTCATCTGTTGCACATGTGCAAAGGGAATATTcatGAAGCGATGGTGAAACTGATGCGACCAACGCCTATACTACCAATGGAGCATCCTCTGCTCAGTTACGAGTGCCACGAATCCGATAGATGGACGTCACATGAAATGGACGCGTTCTATCAGGGACTGCTCAAGTACAACAAGGACTTCTCCGCGATTTCGCGGGATGTCGGTGCCAAGACTGCGAAACAATGCGTGCAGTTCTACTACCTTTGGAAGAGGCTCTGTCCTGACGAGTACAAGAGTCTGCGTATTTGTCATGGAAAAGCGAAGATCAAGAGCGAAATTAAAGACAGCAAAGATACCAAAGAGTTACGCGACGCCATCGCGTCCGTATCGGAAATGGACTTTAATGAAGACAAATCGATCCTTCATCGTACACTGTTACAATCAAGCGGAAGAGAAAATTCGGCGACTCTAACCACTAGCGAAGGAGAGCTGAGGTTATTCGCATACGACTGTACAGATAGCTTTAGCGGAAGTGTAACAGTAACGATGGCCGGAAGCACCCAAACCGCCCAAATCGGCAATACCAGCCACGCCACAGTCAACACCAACTCACAAACTCACACTAGTTCTGAGCAACAACTACCCGTGCCTACCCCACTTCACTACCCCTGCAAGATTTGCGGGAAagtTTTCAACAAAGTAAAAAGCAGAAGCGCGCACATGAAATCCCACAGGCCAATACCCTTACCCGATTCAACGGGTCAGGAATCTAAGCGATCCACGCAACAACCGTCGAAAGCGCAAcagctgcagcagccaatGCCATCGCAGCAAAGccaacaacagcagcaacagcctGACAATGCTACGCCGCAAGCTCAAGATCATCAACAACAACTGCCCGCGAGTATCAGCGACAACAGCGCCAAAAATACAGCACATTTATGTCATAATCCTACGAGGCCCCCATAG
Protein Sequence
GPVGEVGGVRLPLQSLHGYGSVFMYSASTSPGGGGGQSSGGGGEVTLRLREPEDIPEEVLARLEDTATLSISLQSDAVLRLGAAGAGNGNLELFDSESGPDLTLSPQTFTSTAEAFINDNSDSLGVPGDNDTGSSEESRAGGGDPGKLGVKKSRLKASSPNRQGPQQCQICGKVFNNASALTKHKLTHSDERKYVCTMCGKAFKRQDHLNGHMLTHRNKKPYECKAEGCGKSYCDARSLRRHTENHHAGSKINDIIGPCSPTTGPHTPNTPGSNPSTPSTPGATSTTNGHGHAALKQLLSTEPAQTQQQKSATSPGASNDGLTKQQLELIQQIMQQTQQQTTTQQQQQQQRTATPSASVATQIQKTQKPSIKSTASSGNISNNSASGNATNSARSSPKPKMWNHSHQQQQQAQQQAQQQQQQQQVGSPGSGNVGKGSPSPGNSSSPGTVTTSNKTQTEPKPVECNLCHRKFKNIPALNGHMRLHGGYFKKDAENKKSEKKEVVGPPLQTASVSVRALIEEKIIQKRTTAVDANGNQQPRTTAFTTQADAVSQTVVKTNFAIPAPPPLAAGEKVRRFSDGEHFRQPNVTVGHTTVQKHLQETSKTQAQAQALADMILKGTKVAVKRTISDPGQRLHLTYQQPVQSATTNQQPNNQQPQAQPAVTESFTMTGYAEDGGYFSPSLQDEVFQQVTTVPDSVLLHATHLDSIQFQTANLLQEQSTEQLQDITLEDRYSSQHTVNPDLQALVNSPLPDSLAEFSTYAAQYTESPHTLPTQSPLPSPLTRHDSPSFTYPTPPASQEGLLTGSLPLLSPQEDPENVRHVSSPLSAAFYTTTMSSAAAVEEALNEVLPGESEADADLYGSGSPNPHSPLPSPLSATSAPSPLPPSSVSSPGPVAFTGTNFPVSPHNALQNQMMPNSEDPLLSSTSKDFAASGRRRFEFQSYKVITSQNLMDFGLGNGSVAGIVVDNNGDVKLIQTAGLQKANVYVQAGSLSPALTFKKEIRLATPKIEPVTVNLGLNVQTTNQQQCNASQFNQQQIVNPAKFFIQNNHTTKNNILRHKTVTGNLPIPIDQIKQEMLDEDVFLSPGSLPASSPVRHYRKRPRMDSGQYTSSSHSYPSRLRKACDRHWDSSYTPPPILDPSRPGPGLYARLHQHERDSDFSSDDSQGNDGPPPRINIGTRYQAMIPPVEYDGDRGNDGPEADHLLWDPGINNVLTNTELEMYLQFACCAAVPGGGRNKEYALHLLHMCKGNIHEAMVKLMRPTPILPMEHPLLSYECHESDRWTSHEMDAFYQGLLKYNKDFSAISRDVGAKTAKQCVQFYYLWKRLCPDEYKSLRICHGKAKIKSEIKDSKDTKELRDAIASVSEMDFNEDKSILHRTLLQSSGRENSATLTTSEGELRLFAYDCTDSFSGSVTVTMAGSTQTAQIGNTSHATVNTNSQTHTSSEQQLPVPTPLHYPCKICGKVFNKVKSRSAHMKSHRPIPLPDSTGQESKRSTQQPSKAQQLQQPMPSQQSQQQQQQPDNATPQAQDHQQQLPASISDNSAKNTAHLCHNPTRPP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01122371;
90% Identity
iTF_01355686;
80% Identity
iTF_00016895;