Basic Information

Insect: Acromyrmex heyeri
Gene Symbol: ush
Assembly: GCA_017607565.1
Location: JAANIB010007008.1:519404-527529[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.004 0.2 11.3 0.0 3 20 245 262 243 264 0.92

2 8 2.9e-05 0.0015 18.0 1.3 1 23 297 319 297 319 0.98

3 8 0.067 3.3 7.4 1.6 3 20 374 391 373 393 0.93

4 8 0.01 0.5 10.0 4.4 2 21 537 556 536 557 0.94

5 8 0.0073 0.36 10.5 0.0 2 20 584 602 583 604 0.93

6 8 0.012 0.57 9.8 0.0 2 23 643 664 642 664 0.95

7 8 0.0062 0.31 10.7 1.4 1 23 670 692 670 692 0.99

8 8 0.066 3.3 7.4 0.5 3 21 790 808 789 809 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.004	0.2	11.3	0.0	3	20	245	262	243	264	0.92
2	8	2.9e-05	0.0015	18.0	1.3	1	23	297	319	297	319	0.98
3	8	0.067	3.3	7.4	1.6	3	20	374	391	373	393	0.93
4	8	0.01	0.5	10.0	4.4	2	21	537	556	536	557	0.94
5	8	0.0073	0.36	10.5	0.0	2	20	584	602	583	604	0.93
6	8	0.012	0.57	9.8	0.0	2	23	643	664	642	664	0.95
7	8	0.0062	0.31	10.7	1.4	1	23	670	692	670	692	0.99
8	8	0.066	3.3	7.4	0.5	3	21	790	808	789	809	0.92

Sequence Information

Coding Sequence: CAACTGATGTGTATCCATTTTTTGGTTTCAGGGGAGGATGAAGAATGGAGCGACTCGGAGAAGACCCCGTCGGTGAGCAGCGGCGTGGACGGCGGCGCCGGCGGATCGGCAGTGTCGAGTCCGGTAGCACCGGCCGTTGAGGAAGACTCGAGCTTACCGCCTCCTCCAAGACTCAACCCCGCGTCATCTTCGATCAGTGAGGAAGATATCAAGCTGCGCCTCAGCGTGCTTTCGGAGAACACGAGACTGCGCCTAGTCAACCTTAACGAGGACATCGAGGCTAGGGCCATAAGAGACCGCCATGCACCGTCCAGGAGCGTGCGGACGCGAGAGTCGAGTCCCAAGGACGTCGACGAGGAACAACATACGACGAAAGAGGATGAGTGCCAACCGAGGCCGTCGTCCACTTCCATCAAGAGGCGGGACTCCGTCTGCCGCAGGGATTCGGAGGACTCAATCGCCGCGGGGGAGACCAAGAGGATACGACTCGACGACGAGGCAACACCAAGACTGAGACTCAATACTAGTCTGGCGACGGATCCCGCTCTGCGACCCGCCACCGTCGCCGCCCTTACCGTGAAGCCCGAGAACACGTCGCCTCCGAATCCAACACCGCCGCTTCCGGCCGGATTGCAGAACGCGATCGCATCAGGTCGCCTGTTCGTCCTGCCGACCGACGGCAAGGAGACGATCACGGTGGAGCCAGCTAGGCCTCCACCGACCGCCCTGATCTGCCCGCCGTGCGGTATCCGGTTCAGCTCGGCGAGCACCCTCGAGGCACATCGCACCTTCTACTGCGCCCATCGACCGCGCGTGGACGAAGATGCGGCGAACGACGAGGACGACGACGGCAGCAAGTCCGGCGGCAAGTTCGAGATACGGAAGGCGTACGCGTGTCCTCATTGTTCTTATAGTGCCGATAAGAAGGTGTCTCTAAATCGTCACATGCGGATGCACGCGTCATCGCCGGCACCGTCGACGATACCATCATCGTCAAcagcggcggcagcggcggcagTGGCAGTGGTGACGAACCCGAACTCCTCGACGGGAAATCCGACAACGGCTGGTCAAACCACCGCGGCTAACGGTTCCTTGAACGAGGAAGCCGAGAGATACTGCAGGAACTGCGACATTCGATTCAGTTCCTTGAAGACGTATAGGGCGCATAAAACGCATTACTGCAGCACGAGGCACGTGGTGAAGGACACGTTATCAACTCCAACGGCGACGCCGACATCCTCGATGAAGGCGTCGCCGCCGACTAGTTCGAGTCCTGGTGACTCGCCACCTCCGCAGCCGTGCCTGGCGCTGCCCACTAACCCCATCCTCATCGTGCCGTATTCGTTGTTCCGTGGCGCGAGTGTCCTCGCCGCGCCAGCACTTCCGGCTCCCGATACAGCGTGCTTCCTTCTGCCAAATGGTTCCCTTCAGCCAATGACGAGAGGCCTCGCTTCCACGGCCCAGAACGCCATGGTGGAGCCGCCGGCTGTCCTGAGGGCGGCGAATAAACCCTCGACGCCAGCGTCGGTGGTCGCGGCGGCATCGACACTCGCTGAACTGCCGCCACCACCTGTTCCTGGGGTGCTCGTCAAGCAGGGCGTCTCTAGGTGCAAGGAATGTAATATCGTGTTCTGCCGACACGAGAATTTCGTCGCTCACAAGAAGCACTACTGCCAAGCGAGGGAGACGACGGTGAGCAACAGTTCGCCGCCTCCTGACGCGACCTCACCACCCTTGGTCCAGCTCATCTGCGCCCAGTGTGGCATCAAGTTCGCTTCCATAGACAATCTGGTCGCCCATCAGGCATTCTACTGTCCCAAGAGGCCCGAACCCCAAGAGCACCACACACGGTGTTCTAAGTGCAAGGCGATAATAGAACCCGGCAGCAGTCATACCTGCGCCAGCGGCACGACCGGCGGCTGGCGGTGTCCGGTTTGCGGCGCCGTCAGTCCCACAGCCGGTGCCGCTCAGCGTCACATGGACGCTCATCAGGGCGTCAAAGCCTTCCGGTGCACGATTTGTCGTTACAAAGGCAACACTCTGCGTGGCATGAGGACCCACATTAGAATGCACTTCGAGAAGCGTGGTACAGATCTGCAGGAGGAGAATTATATAACATGCGTGCTCGACGACGAGGCGACACTGCCGACGCCGGAACCTGCAGCCGCCACGACGCCAGAGGAGATCCCTGCTGAGATCCAAGTGAACGGCAAAACGGAAATAAGAAAGAGCCCGCAACCACCACCGCTGCCGCCGCCTCCGCCGACATTGCCACCGTCGCTCACCAGCAAGGTAAAACAAGAGCGCGAGGATTCGCCGTCACCCGACGAAAGTCTGGACAGCAGCAAGAGTGGGCCGCGCTACTGCCGCTCCTGTGACATCAGCTTCAACTACCTGAGCACCTTCATTGCTCACAAGAAGTTCTACTGCTCGAGTCATGCCGGTGAGGCGAgcaacaacaataataacaataataataacaataacaacgCCAGCGGTCATCCGACGACGCCGCCGACCGGCAGGACCGAGGCATCGGTGCTC
Protein Sequence: QLMCIHFLVSGEDEEWSDSEKTPSVSSGVDGGAGGSAVSSPVAPAVEEDSSLPPPPRLNPASSSISEEDIKLRLSVLSENTRLRLVNLNEDIEARAIRDRHAPSRSVRTRESSPKDVDEEQHTTKEDECQPRPSSTSIKRRDSVCRRDSEDSIAAGETKRIRLDDEATPRLRLNTSLATDPALRPATVAALTVKPENTSPPNPTPPLPAGLQNAIASGRLFVLPTDGKETITVEPARPPPTALICPPCGIRFSSASTLEAHRTFYCAHRPRVDEDAANDEDDDGSKSGGKFEIRKAYACPHCSYSADKKVSLNRHMRMHASSPAPSTIPSSSTAAAAAAVAVVTNPNSSTGNPTTAGQTTAANGSLNEEAERYCRNCDIRFSSLKTYRAHKTHYCSTRHVVKDTLSTPTATPTSSMKASPPTSSSPGDSPPPQPCLALPTNPILIVPYSLFRGASVLAAPALPAPDTACFLLPNGSLQPMTRGLASTAQNAMVEPPAVLRAANKPSTPASVVAAASTLAELPPPPVPGVLVKQGVSRCKECNIVFCRHENFVAHKKHYCQARETTVSNSSPPPDATSPPLVQLICAQCGIKFASIDNLVAHQAFYCPKRPEPQEHHTRCSKCKAIIEPGSSHTCASGTTGGWRCPVCGAVSPTAGAAQRHMDAHQGVKAFRCTICRYKGNTLRGMRTHIRMHFEKRGTDLQEENYITCVLDDEATLPTPEPAAATTPEEIPAEIQVNGKTEIRKSPQPPPLPPPPPTLPPSLTSKVKQEREDSPSPDESLDSSKSGPRYCRSCDISFNYLSTFIAHKKFYCSSHAGEASNNNNNNNNNNNNASGHPTTPPTGRTEASVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00015644;
90% Identity: iTF_00014984;
80% Identity: -