Ahey008912.1
Basic Information
- Insect
- Acromyrmex heyeri
- Gene Symbol
- lola
- Assembly
- GCA_017607565.1
- Location
- JAANIB010010918.1:438715-476917[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 7.1e-05 0.0035 16.8 1.0 1 21 520 540 520 541 0.93 2 11 0.0016 0.08 12.5 5.3 1 23 549 572 549 572 0.97 3 11 0.11 5.6 6.7 3.9 1 21 585 605 585 606 0.94 4 11 0.86 42 3.9 1.0 1 13 630 642 630 644 0.91 5 11 0.0032 0.16 11.6 0.9 1 21 662 682 662 683 0.94 6 11 0.00019 0.0092 15.5 1.1 1 22 702 723 702 723 0.93 7 11 6.3e-07 3.1e-05 23.2 1.9 1 21 744 764 744 765 0.96 8 11 0.025 1.2 8.8 3.8 1 21 784 804 784 805 0.90 9 11 0.014 0.69 9.6 3.5 1 22 901 922 901 922 0.94 10 11 0.16 7.7 6.3 2.3 1 21 939 959 939 960 0.91 11 11 0.43 21 4.9 0.1 2 11 967 976 966 980 0.89
Sequence Information
- Coding Sequence
- AAACGAGGAAACGAAGCCAGAACTACCATGGAGGACGACCAGCAGTTCTGTCTCAGGTGGAACAACCACCAAAGTACGCTCATACAAAACTTCGACACACTCCTTGAAAGCGGGACGCTGGTCGACTGCACCCTGGCGGCGGAGGGGAAGACTCTCAAGGCCCACAAAGTAGTCCTCTCCGCGTGCAGTCCATACTTTGAGTGCCTCCTCAGCGAACACTATGACAAGCACCCAGTGTTCATACTCAAAGATGTTAAATTCAAAGAACTTAAGGCAATGATGGATTATATGTACAGAGGGGAAGTAAATATTTCCCAAGACCAACTGGCAGCACTCCTCAAAGCCGCCGAGTCTCTGCAAATTAAGGGCCTTTCGGAAAGTAAAACTGCTGGCAGTAGTAAGACGGAGTCCAGGCCACAGAAAACCGTCTCACAACCAACAGCACCGTCGTTAGACATTCCACACGCGTCTTCCGGTCTGACGATAGAAAAGAACAAAGTTCCTAGGCAGAGTTTGGCGCAAAGTTCCGTGGGGGATATACCAGAGGATACGGCTAGTCCTCAGGTGTCGAAAGGGTTGTCCTCGAGGGAAGGTTCACAAAGTCCAAcatcaagaaaaagaaaaaggtttCGAAGAAGAAGTTTAACCGAAGATAGTACGATAGAAAATCAGGACGCATCGAATTCCAGCGACATGCCTCAGCAAATGGGTGTACCGGCGCTTGGTATCGCGCCAGTGGCAGACGAAAAAGTACACGCAGACCCAACAGACTCTCTCGGCAGGTCAGCTTTAATGACGCAATTGACGAAACCTGCCGATGAGATGTTACAGcTGCCACTCGAAAAACCCGAGCCAAATGATAATCTCATCGAGCCAAAGTCTGAATACCTAGATGACGCTGAGGAGGGTGTCGAAGACCTAACGCTGGATGAAGATATGAATGATCTTAATGACATAGAGCAGGACAACAATCGAGCTGGACCGTCCCATGACCCCGCCCAACACCCCGcagGTATGGGCTCATGGCATGTTACCGGTGACCGAAGTAATGCGGGGGGTGTTGTGGGCTCCGTGGCAGCTCCTGGAACGGGAGATGAGGTTTTTCTCGCAGCTCAGGAGGCCGCACAGGCTCATCGCGACTCACAAGGTAGGCTCAGTGGCTTCATCTACAAGTATCGAAGCGGTCTGCGGGGACATATCGCCGACTGTCTCtcggaaaaagagaaattggaGGCTGATTTTCGTCAACGACAGGAGCAGCGGCGGCAGCGAGAACAGCAGCAGCAGGTGCAGCAGCGACTGGAGCAGTTTACTGAGAAAGACGTCAGAGTACTGTACAAGTTTTGGAAATCATCGCAAAATTTACACATTTGTTTCGTTTCGAACATGCTTGCAGCATACTGGACTGAATACTCGACGGTGCACGAGACTCTGGCCTTACAGTCGCTCGACTGGAAGAAGATATCCGAACAGCAGCATCGtcagcaacaacaacagcagcagcagcaacaattTTCGCAGCGACAGCAATCGTTTCCACAGCAACCATTGCAGGGCCATGTTTGCAAAGATTGCGGCAAGATCTACAAACAGAGGAACGCTCTATGGCGACactttaaatacgaatgtGGCAAAAGTCCCAGATTCCAGTGTCCGTATTGTCGCTATCGGACGAAACAACGATCTAATATGTCTTCGCATATTAAGCACAAGCACGTGGCGTCGGCGCTTGACAGTATTCACATTAGCGAGTATCGTTGCTGTTTCTGCAACAGTCCATACCCGACGACATCTCATCTGAAAAGTCATCTGACCAGAGGTTGTTTCATGGACCCAACCTTCTCGGTAGAGAAACGGCGCAGTCTCAACAAAATGGAGTCTAGAAATTATGTATGCCCAAAGTGCTCTCAAGGCTATAAGAACAAGCGGCGAACTGTTGTTGATTCTTGTGTTGCAGAATACCGCACGTCCGTCGTCCGAACTTACGCCTGTATGTACTGCAACAAGAGCTTTGTCCTTAAACGCTTTCTTTATGCCCATCTGAAGAAGAGCTGCTATTGGAATCCGAATTCCGAGTGTTATCACGCGCAGAGCTCGAAACCCTTCTTGTGTTCCAAATGTGGTGCCTCGTATTCGAAGCAGTATTTCCTGACGCAACATATGCGTAAAGATTGTGAATTGGAGCTAAGCGCGAATAATTCGACGCGTGGCGAAGGCACCAAGAGAAAGTATAGTTGCAAGTATTGCGGCAAGGGCTTTACGCAGTCTGGTCATCTGAGGAGTCATCAGAAGAGCTCCTGCTACTGGAACCCCAGGTCTACCTGCCATCAGTCACAGAAGATTAGGCCGTTCTCCTGCACACAGTGCGGCGCTTGCTACTCCAAGCAGTCGCATCTCATCTTCCATGTGAGGCATGAGTGTGGTCAGAAAGAGTCATCGCAGGTAATTGGAACGCGAGCGAAGAAATCACAGAAAGAAGAACAATTGTCATTGAagcagaaagaaaaattatcggagaaagaaagaacaagagctaaagaaagagaagaagatgATTTCATTAATAACATGCCTTCAACGAGCACTGCGCAAAGTTCTTCAAGggttttagaaatttttataaatgatagcTCGCCTCAGACCAGCGATAACGAAAGCTCTGTGCCTTGGACCGACTCGAAGAATGTGGAACTGAAGTTATACAAATGCCAGTATTGTGGCATCAGTTACAAGAAATGTAACATTCTCAAACATCACATTATGACGACATGTTTGTTGAATCCAAACTCTAGAACCATGAAGGAAGCTGGACAATTCAAATGTCTAGAATGTGGTCGTAATTATAAGGAATTGAAATCTTTGAGATTTCATCAGAAACATGAGTGCCAGAAAAAAGTAACGTGTTCAGATTGTGGCACAACTTTCATTGGGTCAGTTGTTCCGGAACGTCATAAGAAGAATTATTGCAAAACGAAGAAGCAATCCAAATTGAAGATAGAAGAGCCGCAGAGCGAACTCTTTGAAGACGATGAATTCAGCATTGACTCAgat
- Protein Sequence
- KRGNEARTTMEDDQQFCLRWNNHQSTLIQNFDTLLESGTLVDCTLAAEGKTLKAHKVVLSACSPYFECLLSEHYDKHPVFILKDVKFKELKAMMDYMYRGEVNISQDQLAALLKAAESLQIKGLSESKTAGSSKTESRPQKTVSQPTAPSLDIPHASSGLTIEKNKVPRQSLAQSSVGDIPEDTASPQVSKGLSSREGSQSPTSRKRKRFRRRSLTEDSTIENQDASNSSDMPQQMGVPALGIAPVADEKVHADPTDSLGRSALMTQLTKPADEMLQLPLEKPEPNDNLIEPKSEYLDDAEEGVEDLTLDEDMNDLNDIEQDNNRAGPSHDPAQHPAGMGSWHVTGDRSNAGGVVGSVAAPGTGDEVFLAAQEAAQAHRDSQGRLSGFIYKYRSGLRGHIADCLSEKEKLEADFRQRQEQRRQREQQQQVQQRLEQFTEKDVRVLYKFWKSSQNLHICFVSNMLAAYWTEYSTVHETLALQSLDWKKISEQQHRQQQQQQQQQQFSQRQQSFPQQPLQGHVCKDCGKIYKQRNALWRHFKYECGKSPRFQCPYCRYRTKQRSNMSSHIKHKHVASALDSIHISEYRCCFCNSPYPTTSHLKSHLTRGCFMDPTFSVEKRRSLNKMESRNYVCPKCSQGYKNKRRTVVDSCVAEYRTSVVRTYACMYCNKSFVLKRFLYAHLKKSCYWNPNSECYHAQSSKPFLCSKCGASYSKQYFLTQHMRKDCELELSANNSTRGEGTKRKYSCKYCGKGFTQSGHLRSHQKSSCYWNPRSTCHQSQKIRPFSCTQCGACYSKQSHLIFHVRHECGQKESSQVIGTRAKKSQKEEQLSLKQKEKLSEKERTRAKEREEDDFINNMPSTSTAQSSSRVLEIFINDSSPQTSDNESSVPWTDSKNVELKLYKCQYCGISYKKCNILKHHIMTTCLLNPNSRTMKEAGQFKCLECGRNYKELKSLRFHQKHECQKKVTCSDCGTTFIGSVVPERHKKNYCKTKKQSKLKIEEPQSELFEDDEFSIDSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00016111;
- 90% Identity
- iTF_00016111;
- 80% Identity
- iTF_00016111;