Basic Information

Insect: Acromyrmex heyeri
Gene Symbol: -
Assembly: GCA_017607565.1
Location: JAANIB010000070.1:1041278-1052959[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 3.6e-05 0.0018 17.7 1.4 1 23 338 360 338 360 0.96

2 18 1.3e-05 0.00064 19.1 1.9 1 20 366 385 366 388 0.94

3 18 9e-06 0.00045 19.6 1.4 1 23 394 416 394 416 0.98

4 18 5.2e-05 0.0026 17.2 4.4 1 21 422 442 422 444 0.95

5 18 7e-06 0.00035 19.9 5.6 1 23 450 472 450 472 0.99

6 18 1.6e-05 0.0008 18.8 5.3 1 23 478 500 478 500 0.97

7 18 6.1e-05 0.003 17.0 6.9 1 23 506 528 506 528 0.96

8 18 6e-08 3e-06 26.5 2.7 1 23 534 556 534 556 0.98

9 18 4.4e-05 0.0022 17.4 6.7 1 23 562 584 562 584 0.97

10 18 1.4e-05 0.00068 19.0 5.8 1 23 590 612 590 612 0.98

11 18 2.8e-07 1.4e-05 24.3 2.8 1 23 618 640 618 640 0.98

12 18 5.4e-06 0.00027 20.3 7.8 1 23 646 668 646 668 0.98

13 18 1.7e-05 0.00085 18.7 9.1 1 23 674 696 674 696 0.98

14 18 2.2e-05 0.0011 18.4 7.5 1 23 702 724 702 724 0.98

15 18 0.0011 0.053 13.1 8.8 1 21 730 750 730 752 0.94

16 18 8.2e-06 0.00041 19.7 0.4 1 23 758 780 758 780 0.98

17 18 0.02 0.97 9.1 4.5 1 23 790 812 790 812 0.98

18 18 3.2e-07 1.6e-05 24.2 1.3 1 23 818 840 818 840 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	3.6e-05	0.0018	17.7	1.4	1	23	338	360	338	360	0.96
2	18	1.3e-05	0.00064	19.1	1.9	1	20	366	385	366	388	0.94
3	18	9e-06	0.00045	19.6	1.4	1	23	394	416	394	416	0.98
4	18	5.2e-05	0.0026	17.2	4.4	1	21	422	442	422	444	0.95
5	18	7e-06	0.00035	19.9	5.6	1	23	450	472	450	472	0.99
6	18	1.6e-05	0.0008	18.8	5.3	1	23	478	500	478	500	0.97
7	18	6.1e-05	0.003	17.0	6.9	1	23	506	528	506	528	0.96
8	18	6e-08	3e-06	26.5	2.7	1	23	534	556	534	556	0.98
9	18	4.4e-05	0.0022	17.4	6.7	1	23	562	584	562	584	0.97
10	18	1.4e-05	0.00068	19.0	5.8	1	23	590	612	590	612	0.98
11	18	2.8e-07	1.4e-05	24.3	2.8	1	23	618	640	618	640	0.98
12	18	5.4e-06	0.00027	20.3	7.8	1	23	646	668	646	668	0.98
13	18	1.7e-05	0.00085	18.7	9.1	1	23	674	696	674	696	0.98
14	18	2.2e-05	0.0011	18.4	7.5	1	23	702	724	702	724	0.98
15	18	0.0011	0.053	13.1	8.8	1	21	730	750	730	752	0.94
16	18	8.2e-06	0.00041	19.7	0.4	1	23	758	780	758	780	0.98
17	18	0.02	0.97	9.1	4.5	1	23	790	812	790	812	0.98
18	18	3.2e-07	1.6e-05	24.2	1.3	1	23	818	840	818	840	0.97

Sequence Information

Coding Sequence: ATGGCGTTGACTTCCAGCTCGCACCATCAACAACAGTCAACAGCCGCGCATCATCATCAGCCTTCAGttagcagcagcagcagccaCCACAGTTCTCTGCAGTCGAATCCACAGATTCCTGTGTCTCTTCCCGGCCTTAATTTAGACGGCGCACATCTACCAGCGAGTGTTAGTCATCTGGCTGCACATGCACAAATGCAACAAATGCAGGCGCAAGCACAGCAGCAGCTGCaccagcagcaacagcagcaaccgccgcagcaacagcagcagcagcagcagtcTCATCATCAAATCCCGAATCATCAGAACGCTCAGAATAATGGGCCAACGGCGCATGGCCAGAACGCGCAACGAGACGACAACAAAGTCAAGGATGAAGGCGGTAGTTGCACCACCGAGCGCTGCAGCGATAATCAGGTTCATTGTCAAGTTCAATGCGATCTGCAATTACAACCACCCCAAGATCTTCAACAGAGCTTGatgcaacagcagcagcagcagcagcagcaacagcagcagcagcagatTGGAGTCAACATCAGCGGTAACTCCACCACCGAGGGGGGAAACCAGAACAACTCCGAGAAACCCGAAAAAGAGAAGGAATTGCGGCAATTGAATATGACCCAATTTCAAGTCCCTGACTTGAAACCTGGAGGGCACATGATGGATGTGAGGACAGCAGATGGATCGGTTGTCAAAATTAGCGCAGGAAACGAGCAAGATTTAGCTAAGACTCTTGGCGTCGAAATGgtacaaaatatgtacaagGTTAATGTTGAAGATATTAATCAACTTTTGGCGTATCATGAAGTTTTTGGAAAGCTGCAGAGCGAAATTGCAGCTGGAACGACTTTAGTAGGTAGCACTGTGCCTACGCAAACAGTTACCACGATACAAAATGGCACGCCAATCGTGCAGCAGGtccaattgaataaatttgacatAAAGTCAAGCGACGGCGAAGCGACACCGGGCCCGAGCGCATCGCCCGTGTCGGTAGGCAGCCACGCTTGTGAGATATGCGGAAAGATCTTCCAATTTCGTTATCAACTCATTGTACATCGCAGATATCATACTGAGAGGAAACCATTCACATGTCAGGTATGCGGCAAAGCGTTCTCGAATGCGAATGATTTGACACGTCACGGCAAATGTCATCTGGGTGGATCCATGTTTACCTGTACTGTTTGCTTTCACGTCTTTGCGAATGCGCCTTCACTAGAACGTCATATGAAGAGACATGCTACCGATAAACCATACAATTGTACGGTCTGCGGTAAGAGTTTTGCGCGCAAAGAGCATTTGGATAACCATACAAGATGTCATACTGGCGAGACGCCGTATAGATGCCAATACTGTTCAAAGACATTTACTCGAAAAGAACATATGGTAAATCATGTTCGCAAACACACTGGTGAGACCCCACATCGATGTGATATTTGCAAGAAGAGCTTTACTCGCAAAGAACACTTTATGAACCATGTTATGTGGCATACAGGAGAAACTCCTCATCATTGTCAAGCTTGCGGCAAGAAGTATACACGCAAAGAGCATCTCGCTAACCACATGCGCTCACATACAAACGACACACCGTTTCGTTGTGAAATATGTGGTAAGTCGTTTACGAGGAAGGAGCACTTCACGAACCACATAATGTGGCATACGGGCGAGACGCCGCACCGCTGTGATTTCTGCTCGAAGACGTTCACGCGAAAGGAACATCTCCTGAACCACGTTCGCCAGCACACGGGTGAGTCTCCACACCGATGCGGCTTCTGCTCCAAATCGTTCACCAGAAAGGAACACCTTGTTAACCACATCCGCCAACACACAGgGGAGACGCCCTTCCGCTGTTCATACTGTCCGAAAGCATTTACGCGGAAGGATCACCTGGTGAACCACGTCAGGCAGCACACGGGTGAGTCACCGCACAAGTGCCAGTATTGCACCAAATCCTTCACGCGGAAGGAACATTTGACCAATCACGTGCGTCAACACACAGGCGAATCGCCACACCGATGCCACTTCTGCTCCAAGTCATTTACTCGTAAGGAGCATTTAACGAATCATGTGCGCATCCACACTGGCGAATCTCCACATAGGTGTGAGTTTTGCCAAAGGACGTTCACTAGGAAAGAACATCTAAATAACCATCTCCGTCAACATACCGGAGATTCCTCACACTGTTGCAACGTGTGCTCCAAACCATTCACAAGAAAGGAACATCTCGTGAATCATATGCGTTGCCATACTGGTGAACGTCCATTCGTGTGCACAGAATGTGGCAAGAGTTTCCCATTGAAGGGCAATCTTCTGTTTCATATGCGCTCGCACAATAAGGGCAGCAATGCCGAAAGACCATTTCGCTGCGACCTGTGCCCTAAAGATTTCATGTGCAAAGGACACTTGGTCTCGCATCGGCGTTCGCATTCAGACGAGCGGCCGCACAGTTGTCCGGATTGTGGGAAGACCTTTGTTGAGAAGGGCAATATGCTGCGACATTTGCGCAAGCACGCGGCTGAAGGCCCGCCGACACAAGTTAGTACACCATCAGCTATACCGCAATCCGGTGTACTGCCGATACCGGCAGCGGCAGCAGTTCTAGTCGGACATCCCTTAGCACCGCCGGCACCGCCTGTGGTGCCGCAACACACGGTGGTTGTGCCGACACCGCCCGGTGTATTAACATCGTAT
Protein Sequence: MALTSSSHHQQQSTAAHHHQPSVSSSSSHHSSLQSNPQIPVSLPGLNLDGAHLPASVSHLAAHAQMQQMQAQAQQQLHQQQQQQPPQQQQQQQQSHHQIPNHQNAQNNGPTAHGQNAQRDDNKVKDEGGSCTTERCSDNQVHCQVQCDLQLQPPQDLQQSLMQQQQQQQQQQQQQQIGVNISGNSTTEGGNQNNSEKPEKEKELRQLNMTQFQVPDLKPGGHMMDVRTADGSVVKISAGNEQDLAKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQSEIAAGTTLVGSTVPTQTVTTIQNGTPIVQQVQLNKFDIKSSDGEATPGPSASPVSVGSHACEICGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFSNANDLTRHGKCHLGGSMFTCTVCFHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCSKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQACGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLVNHIRQHTGETPFRCSYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCSKPFTRKEHLVNHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSNAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHAAEGPPTQVSTPSAIPQSGVLPIPAAAAVLVGHPLAPPAPPVVPQHTVVVPTPPGVLTSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00899003;
90% Identity: iTF_00014883;
80% Identity: -