Basic Information

Insect: Acromyrmex echinatior
Gene Symbol: -
Assembly: GCA_000204515.1
Location: NW:12423-22302[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 1.2 73 3.4 0.5 1 23 192 217 192 217 0.96

2 17 2 1.2e+02 2.7 0.4 3 23 232 252 231 253 0.79

3 17 2.4 1.4e+02 2.5 2.4 1 23 259 281 259 281 0.96

4 17 0.0025 0.15 11.8 0.3 2 23 287 308 286 308 0.97

5 17 1.5 90 3.1 9.0 2 21 594 613 593 616 0.94

6 17 1.8 1.1e+02 2.8 1.0 1 23 682 704 682 704 0.82

7 17 1.5 89 3.1 1.1 2 23 882 903 881 903 0.96

8 17 0.035 2.1 8.3 0.5 1 23 918 940 918 940 0.97

9 17 0.0078 0.47 10.3 0.2 1 23 948 970 948 970 0.98

10 17 0.13 8 6.4 1.0 2 23 1068 1089 1067 1089 0.95

11 17 0.11 6.8 6.7 0.8 3 23 1101 1121 1099 1121 0.96

12 17 0.0026 0.15 11.8 0.2 1 23 1198 1220 1198 1220 0.98

13 17 0.029 1.7 8.5 0.3 1 23 1294 1316 1294 1316 0.97

14 17 3.3e-05 0.002 17.8 0.9 1 23 1322 1344 1322 1344 0.97

15 17 0.0043 0.26 11.1 2.6 1 23 1407 1429 1407 1429 0.97

16 17 0.0006 0.036 13.8 2.1 1 23 1435 1457 1435 1457 0.99

17 17 1.9 1.1e+02 2.8 0.6 2 23 1546 1567 1545 1567 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	1.2	73	3.4	0.5	1	23	192	217	192	217	0.96
2	17	2	1.2e+02	2.7	0.4	3	23	232	252	231	253	0.79
3	17	2.4	1.4e+02	2.5	2.4	1	23	259	281	259	281	0.96
4	17	0.0025	0.15	11.8	0.3	2	23	287	308	286	308	0.97
5	17	1.5	90	3.1	9.0	2	21	594	613	593	616	0.94
6	17	1.8	1.1e+02	2.8	1.0	1	23	682	704	682	704	0.82
7	17	1.5	89	3.1	1.1	2	23	882	903	881	903	0.96
8	17	0.035	2.1	8.3	0.5	1	23	918	940	918	940	0.97
9	17	0.0078	0.47	10.3	0.2	1	23	948	970	948	970	0.98
10	17	0.13	8	6.4	1.0	2	23	1068	1089	1067	1089	0.95
11	17	0.11	6.8	6.7	0.8	3	23	1101	1121	1099	1121	0.96
12	17	0.0026	0.15	11.8	0.2	1	23	1198	1220	1198	1220	0.98
13	17	0.029	1.7	8.5	0.3	1	23	1294	1316	1294	1316	0.97
14	17	3.3e-05	0.002	17.8	0.9	1	23	1322	1344	1322	1344	0.97
15	17	0.0043	0.26	11.1	2.6	1	23	1407	1429	1407	1429	0.97
16	17	0.0006	0.036	13.8	2.1	1	23	1435	1457	1435	1457	0.99
17	17	1.9	1.1e+02	2.8	0.6	2	23	1546	1567	1545	1567	0.96

Sequence Information

Coding Sequence: ATGGTAAAGAACTGTAGAAAACGTggtgaatataattattcctgcgcggagaaaagaggaaaaagcgAGAGCGGCGCGCGCGCCATGTTTCCTGCGGCAGGCAAGGGCGAGCGAAGAAGTTTGCGCGGAAGCGCGCGGCTCTCGTCCAAGATGTCGGGAAAGCTGCCCCGGTTGCGTGTATTACGACCGCGGCAGCAGCACCAGAGGCGAGCGAGAACAACGGAGCCCGTCGCCATCGTCGACGCCGCGACGTCCGCGACGCCGAAACCGGAAGGTAACCTTAAAGGGACCGTAGCGAGTCACGAGGTGGAACACGATGTGAAGAAAAACGATGCGAAGAAGGGCGAAGACACGTTCGCGTCCGGCGCTATGACTGCTGATACTGCTGTGAGCAAGACGAGCGAGATGGACGAGGATGACAACGACAGCGAGCTGACGATGACCGCCGTCGACGAGGAGGCGACAACATCGTTGGACGGCAACATTGACATTGACGTCGACGTCGACGTCGACATCGCCGTCGCGGTGAATTCCGAGGAGACGATCAACATCGATACGAACGAGCGAGCGTCTTACGAGTGCAAGACCTGCAAACCACCGAAAATGCTGTCCAGTATCAAGGCCTACTTCGAGCACCTGCGAAAGGACCATAAATATAAGgGCAAAAATGAGCACAGTCCAGTTGAAAATCGTTGCCCTGCGTGCTCGTATGTTGCATTGAACGTGAAAGATCTTGAAAATCACCAAAGAGTGCAtcatttgaaaagaaaattctttcgaTGCGCAAAATGCGATTACGTGACGCATATCAAAGCGCGTTATGCTAAGCATGTTAAATATCATTCTATGCCGATGATCAAGTGCGATGCTTGTGATTTTAGTTCAGCGTATAAGTGGAATCTAGATAGACACATGCGGAATCATGGAGGTGGAGGTGCTTTCAAATGTCGTGCATGTAATTTTACTGCTGATATCCGTCAGAGCTTAACGGTGCATGAATCGTATCATCATGACCCACCTGTGGGTCAgatcaacaaaaataataacgatttCGAACGTAAGCCACGAAATAGTCCAAGACGTTATAATCAGGTATTACAAGTTGGAGCCAGTGACTTTCGAGAAGCGTTGCATAAAAGTGGAAGTACAACCACATCAGCCGCTTCTTCTGACTCGTTCGTATCAGatcattcattaatttcaatagaCGATAAGAAAAGTGCCCTGGCTAATGCAGAATGCATTGCATTAAAATGTGAAGAAAAGGGCTGCCAATTTATAACAGCTTGGGATTCCGAGATGCAACGCCATTTAGCAGAATGTCACGCGCCAGTTATCTCATCAAAGCCAAGAAAGCCACTGCCGATGTTAATTCCACTAAGCCTAGCGACTACCAAGTCCAATAACACTTTCAACAACAGCGGACCATCTACAACCCTGCTGAAAGTTCCACGCGTTAGAGTGAGACCTGAATTGGCGCAAATTGCGAAAGAGACGGAACTCGCCAAGATGTACGGAAACAAGGGGGCCGCGAATTCGAAGAGGAATCTCAATACTGTGACTGGTGTATTTGAGAGAAAGAATGCCTCCTTCTTCGataaattaaaggaaaaacTAACAACGACAGCGACGTCGATTAATAACAGTGTGCCAGAGGTAGCTGTAAGTAATGAGAACGACTTGAAATGCTGGTGTACGTTTAAAGCTAGTAGCATGGAAGAGCTAACTTGCCACAAACAGACGCATCACACTGCCCTCAGCGTGTCCGTGGGCACGACACGTTGCCCTAAGTGTAGAAGACGGTGCAAGAGTACAACCGATCTCCAAATGCATATGCAATGCTGTCATTCGCGTGACGACACGACGCCGTCCATCGATAGTAGTTTAGAGAAAGTAACGAATCGCTCGGACATCCGCATGATCTCATACCGTGACGAATTCTCTTTTCCATCGCAAATGGAATGGGATGCCAATCTCAGAGGATCAAATTTTTCTGGACCTCCGTTTGAAGGTGGTCCGACACATCCGAGCAAGCGGCGAGTATTCAAATGTCCCCATTGTCCATTTTGGGCTTCCACCGCAAGTCGCTTTCACGTACATATAGTCGGTCATTTAAACCGGAAGCCATTCGAGTGTTCAATGTGCGCGTATCGTTCTAACTGGCGATGGGACATCACAAAACATATTAAGCTTAAAGCGGCTAAAGACGCAGTGCATACGAGAGCCAGAGTGCTCATGACGGATGAGACAGGTCGACGGAATTATtccaaatataacaaatatctcGCACAGGTAGAACAGCAATCGTGGGATGAGGATCATATGGAGCAGCGTAGCATAGAAGAAGCAAATTCTGAAGAATTGTCATCAAAGTTATTGATTGTGGGCAATAAAGAGTATGTTCCGATGACTAGTTCAGCACCACAATCTCCCATCacaattttatcaacaaaCGAGACTAATCAAAATAGTCATACTGTAGATAGGCGACCTCCACCACCACTCAAAGCAGCGGTTAGAAATCGCGGGCaatctttgttaaaaaacaATCCTATCACGATGCATGTACAGACTTCTAGTGGTGGTGGTGCGGTCTCTATATCTACAGCAATAGATGAGAGTAAACGCACTCAGAATCAGTGGAGGTGCAAACGTTGTAATTATCGAGATAGCaacaaagataatatattgctgcATGTTAAATCTCATTACGAATCTACCAATCAGGAATCTGTTGAAGAAAGAAATTCATTTAGTTGTGAGGAATGTCCGTTTTCGGCATCGGATGCTGTCACTCTGTCCATTCACAAGAAGCACCATCGGCCGAACTTAGATGCTATATTTAAATGCTATCTTTGTCCATACTACGTTAGTACAAAGGCAGAACTGTTGGAGCACGCTAGACTTCATGGAGAAGAGTTGGCAGCTATGCATCAACAGAATATGGATTTCCCATTATCCAGTCCCAAGAGTAAACAGCcacaaatatcaatttctgAAGGCaGTACTTCTCGAACAAAAGACGAATCGTCTATCGAACAAGTGATTCAGATAACATCACGTAACAATGTAACGACATCTCCAAAAATCACAGGATCTCAGCCGCATTCACTGCCGTCGCTTCTTTTGGACACTCGTGCTCTTCCGGATGCTCCACTGGTTTGGGTATCACGACCAGATGGCACACTAACGAAGATGCTCAAGTGCCGTCATTGTCCGTATATTTCATCGCGACGTGCGGAAGTGCGCGACCATGAGACAATGCACGTAGACATGCCAACTCAGGGTCCCTTGATTGCCTGCACCGATTGTAGCTTTACTTGCACGCGTCGGGAAGTCATGATCGCACATACAGAAATGCATACAGGATCTCTCGGTACTGTGCACTGTCTTTTCGATCAGACGCGACCTGATTCTCAACAAGTGAGTGATCTGATCACTCTACTTGGCTTGACGCACACTCCCATGCTAGGCACCGAGCCTGATTTACAGGATTCTCGTCTAGTGCACTGCTGCGGCAAATGTCCAGCACGATTTCTATGCGAAAAGGAGTTGCGTATCCATCTGCGTTACCATACCACATTATTAGCATATTCATGCCAATGGTGCTCGTATGCAGCGCGACAACCGGCGCACCTGTTAGCTCACCAAAAGGCGCACTCATCAGAATATCAAGAACGTACCAAATATCTATTGACCTTGTATGGCCACTCGCAGCGTTATCCACCGCCCACGACAGCGTGTGTTGAAGTGGAGAGTCGAGAAAACAATGACAGTGCGCTGAACGTCGCGTGGATTGTTGTTGAAATCAATGAAAATTCAAACAGTTATAACAGTGTCAATGGCACGACGGAGACCGTTCAAAGGACCGGTCAAGTGTTTACGTGTGCTAAGTGTCCGGCTCGTTACTTCAAATTGGATGCTTTGGAGTACCACATGACGCTTCATGGTTCAAACAATCGATACAAATGTAATGACTGTGATTATTCATCAAAAAcggaacaaaatttattaaaacatcaGGTAGTACATCGACGACATAATGAAACCAGTCAAGCAACTGCGGAGCTGTCATCTACCATAGATTCCGCTTCAACATCCTCTCCCGGATCTCCACTGCAGTCACCTCCGGATCCACAATTTGGTGTGTTTATGCGCGGCAATCCTAATTTTGTTTATCCAGGTTACCTACGGAATGGTCGTCTGAAAGAAAAACGTTACAAGTGTCACAAATGTCCATCTGCTTTTGAAAAGCGTGAACAATATAGAGTTCATCTGACTTTGCATGGGGCAAAACAACGCTATCGCTGCACTACGTGCGACTATTCGGTCAAATATTATGCCAATTACGTACAACATTTGAGGAAGCATCAGGCAAACGCAGAAGCACAGGCATCTCGGAGACAATTCGAGGATGATCGGATTTCAATCGATAGCGATAGCACTGACGTTGTATCGGCATCATCACGTAAGTCGTCGAGATCATCTGCTGCTGCTAATATGATCGCATTTTCTTCCGCTAATAACGCGTCCAATGCTGCGCTACAACCTTCTAATCAGGATAAGCAGAGTTTATTGTTAATGCAAAAAAAGGGTATCATTTCGTCAACGGGTGACGCCGATGTGGAGATGATTCGCTGCCAGAGCTGCCCCTTCTCCACCATCGATAAGGATGTCATGGATTCACACAAGCGTCGCCATGGTATTGAACGCATGACGCCGCCGTGTCCGCATTGCGATTACATTCCGCGAAAAGACGAAAACGTCGGTGAACATATTAAACTGCACTTCACAAGACTGTACAAGCCTGAATCCTATCTTATTGTTGAAATGCTGACGCTGACAACGGAGAAAATATCTGCGAACAACAAAAATGATAGGGGTCAACGATTGAAGGAATTACTGTTCAAGGAATGCGCCGATGGTAGATTCCTACCGCTCACCGAAACGATTAACACTTATACTTTAGGTACCTCCTCTTCAAAAGTAAAAACTGCCAAGGAGAAGATTATTATAGATTCAAACACAGGCGAGACCAAGCATCGTCTTGCCACGTAA
Protein Sequence: MVKNCRKRGEYNYSCAEKRGKSESGARAMFPAAGKGERRSLRGSARLSSKMSGKLPRLRVLRPRQQHQRRARTTEPVAIVDAATSATPKPEGNLKGTVASHEVEHDVKKNDAKKGEDTFASGAMTADTAVSKTSEMDEDDNDSELTMTAVDEEATTSLDGNIDIDVDVDVDIAVAVNSEETINIDTNERASYECKTCKPPKMLSSIKAYFEHLRKDHKYKGKNEHSPVENRCPACSYVALNVKDLENHQRVHHLKRKFFRCAKCDYVTHIKARYAKHVKYHSMPMIKCDACDFSSAYKWNLDRHMRNHGGGGAFKCRACNFTADIRQSLTVHESYHHDPPVGQINKNNNDFERKPRNSPRRYNQVLQVGASDFREALHKSGSTTTSAASSDSFVSDHSLISIDDKKSALANAECIALKCEEKGCQFITAWDSEMQRHLAECHAPVISSKPRKPLPMLIPLSLATTKSNNTFNNSGPSTTLLKVPRVRVRPELAQIAKETELAKMYGNKGAANSKRNLNTVTGVFERKNASFFDKLKEKLTTTATSINNSVPEVAVSNENDLKCWCTFKASSMEELTCHKQTHHTALSVSVGTTRCPKCRRRCKSTTDLQMHMQCCHSRDDTTPSIDSSLEKVTNRSDIRMISYRDEFSFPSQMEWDANLRGSNFSGPPFEGGPTHPSKRRVFKCPHCPFWASTASRFHVHIVGHLNRKPFECSMCAYRSNWRWDITKHIKLKAAKDAVHTRARVLMTDETGRRNYSKYNKYLAQVEQQSWDEDHMEQRSIEEANSEELSSKLLIVGNKEYVPMTSSAPQSPITILSTNETNQNSHTVDRRPPPPLKAAVRNRGQSLLKNNPITMHVQTSSGGGAVSISTAIDESKRTQNQWRCKRCNYRDSNKDNILLHVKSHYESTNQESVEERNSFSCEECPFSASDAVTLSIHKKHHRPNLDAIFKCYLCPYYVSTKAELLEHARLHGEELAAMHQQNMDFPLSSPKSKQPQISISEGSTSRTKDESSIEQVIQITSRNNVTTSPKITGSQPHSLPSLLLDTRALPDAPLVWVSRPDGTLTKMLKCRHCPYISSRRAEVRDHETMHVDMPTQGPLIACTDCSFTCTRREVMIAHTEMHTGSLGTVHCLFDQTRPDSQQVSDLITLLGLTHTPMLGTEPDLQDSRLVHCCGKCPARFLCEKELRIHLRYHTTLLAYSCQWCSYAARQPAHLLAHQKAHSSEYQERTKYLLTLYGHSQRYPPPTTACVEVESRENNDSALNVAWIVVEINENSNSYNSVNGTTETVQRTGQVFTCAKCPARYFKLDALEYHMTLHGSNNRYKCNDCDYSSKTEQNLLKHQVVHRRHNETSQATAELSSTIDSASTSSPGSPLQSPPDPQFGVFMRGNPNFVYPGYLRNGRLKEKRYKCHKCPSAFEKREQYRVHLTLHGAKQRYRCTTCDYSVKYYANYVQHLRKHQANAEAQASRRQFEDDRISIDSDSTDVVSASSRKSSRSSAAANMIAFSSANNASNAALQPSNQDKQSLLLMQKKGIISSTGDADVEMIRCQSCPFSTIDKDVMDSHKRRHGIERMTPPCPHCDYIPRKDENVGEHIKLHFTRLYKPESYLIVEMLTLTTEKISANNKNDRGQRLKELLFKECADGRFLPLTETINTYTLGTSSSKVKTAKEKIIIDSNTGETKHRLAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00127818;
90% Identity: iTF_00181621;
80% Identity: -