Aech007407.1
Basic Information
- Insect
- Acromyrmex echinatior
- Gene Symbol
- ZFY
- Assembly
- GCA_000204515.1
- Location
- NW:920678-925171[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.11 6.8 6.7 0.3 1 17 100 116 100 123 0.80 2 18 0.034 2 8.3 4.1 1 23 132 155 132 155 0.97 3 18 0.12 7.5 6.5 1.1 1 23 170 193 170 193 0.94 4 18 3.1e-05 0.0019 17.9 3.3 1 23 199 222 199 222 0.95 5 18 0.00093 0.056 13.2 1.2 2 23 228 250 227 250 0.94 6 18 0.00014 0.0084 15.8 0.4 1 23 255 278 255 278 0.94 7 18 1.4e-07 8.5e-06 25.2 3.1 1 23 284 306 284 306 0.99 8 18 3.1e-06 0.00019 21.0 1.0 1 23 312 334 312 334 0.97 9 18 0.0064 0.39 10.6 2.1 1 20 340 359 340 362 0.87 10 18 2.6e-05 0.0016 18.1 1.8 1 23 426 448 426 448 0.98 11 18 0.16 9.9 6.1 1.0 2 23 478 500 477 500 0.91 12 18 1.6e-05 0.00095 18.8 0.8 1 23 516 539 516 539 0.95 13 18 1.7e-06 0.0001 21.9 1.7 1 23 545 568 545 568 0.97 14 18 0.00045 0.027 14.2 4.8 2 23 574 596 573 596 0.95 15 18 0.00012 0.0072 16.0 1.0 1 23 601 624 601 624 0.98 16 18 3.4e-07 2.1e-05 24.0 0.8 2 23 631 652 630 652 0.97 17 18 4.2e-06 0.00025 20.6 0.9 1 23 658 680 658 680 0.97 18 18 7.7e-05 0.0046 16.6 0.5 1 23 686 708 686 708 0.96
Sequence Information
- Coding Sequence
- ATGCAACTGTGGAAAGTAGTTGATTTAGAAGGATGTCTCTGTTATGCCTTTCTTCCAGTAAATCACATATCAAAAAAAACAGAAGAGAATCAATACAATCAGAAACAGattgttgaaatattgaaaatcggGACTGATAATATGGTAAACTTAGAAATTACAGACGATAACAGTGTAATTTATACAGACGTATCGAACGATGTCTATACAATAAATACGGAAAACAAGAAAGTCTTGTCGGCAGACGAGTTAGATTCGGATGAAGATCAACTTGATAATAAGAAGGAGACCAAGGTCTATACTTGTGATAAGTGCAATATTTCCTTTCCCATGATGAAGATGTTAAAGTTTCATTGGGATCTAATGCATAAACAGGATAAAGATATTGTTACGTTCACCTGCAGTTTTTGTACCTTTGAAAGTACCAACAAATCGACCTTTTATTCTCATATTAATAGGAAACATTCCACGAATCGTGTAATTAAACGAAGAAAAAAGCCGCAGGAATACTTGTGTAACTTTTGCGGATTTGAATCCCCAAATCGACGACGGTTAAAAGAGCACCTCGATCGCAAACACGGATCCGAGTATAAATATGACTGTGAGCATTGCGGcaagaaatttaaagtgaAAAGCGATATGAGATTGCATGTACGTTTCAAGCACATGGAGGACCCAGTAGTATGCGATATCTGCAATAAGACCTGCTCCAACACTAATTCACTGTATGTGCACAAAAAGTGGGCGCATTTCAAGCCCAAATATAAATGCGAAATCTGCAATAGGCGTTTGGTCACGCAGGAGAATTTGGATCAACATATCTTTCTACAGCACGAGTCCAGAAAGAGTTTCACATGCGAAGAGTGCGGTAAATCTTTCAATGACAATCACCGATTGAAACAGCATATGATGACCCACACCGGTGACCGACCGTATGACTGTCATATCTGTGGCAAAGCTTTTGCGCGTAGAACTGCTTACAGGCAGCATCTGTTACTTCATACGGGAAAACGACCgtatatttgtgatatttgtGGGAAAGCTTTTGCGCAAAAACCTGGATTAATATGTCATCGAAAATGTCATCCTGGAGAGCATCCTCCTTTACCAGTGGTGCATATCGATCACATTCTTAACGATTTTATGAAGAAGAAGCCGACAGCGGATATTTTTGCCAGCGAAGCGGTGACGAATAAAACTGGAGCAAAAACATCGACTTTTGCATGTAAACAAGAAAAGAAGTCACAGGAGGATTGTGAAGAAAAATGCAATCCGTTCGTCTGTGACGTCTGTCTTAAATACTTCAAGAGCAAGTACTTACTGAAACGTCATGAGCTCACGCACACGGCGGAGATTATGCGCGGATGCGAAACGGACGTGAAAGAAAATTCTACATTCACTGACGAGGTGCCGCAAAAGCAGGCACCTCTCCCATGCGTAACATGCGACTTTCGCTGCAATAAGAGATCCACGATGATTGCACATCTCGCCGAGAAGCACGACGGTATCGCGAACAATGACAGATTCGCCGGTGACAAGCGCGAGTTTACCTGCGTCGTCTGCGGCTTGGTGTTCACCCGCAAAGAGAGCCTGAGGTCACATTTCATCCGTAAACATACTCAACATTACGCTTACTCGTGTGAGCATTGTGGCAAGGGGTTCAAAGTTAAGGGTGATCTCACCACCCATACCCGGTTAAATCATCAGGAGTCACCGGTGGTGTGCGGTGTCTGCGGCAAGACCTGCCGAAATAGCCACAGTCTGTACACTCATCAGAAACATGCGCATTACAAGGCAAAATATGAATGTCCGTTGTGCCATCGACGACTCGTAACGCAGCAGAATCTAGATCAGCACTTGCTGACGCAGCATGAGAGGAAGGAAAAGTCGGTGTGTGAGCAATGCGGCAAGACCTTCTTCGAAAATTACGATTTGAGGAAGCACATGAGAATTCATACAGGCGACAAGCCGTACAACTGCACAGTCTGCGGCAGAGCGTTTGCCAGGCATAGCAGCCTGAGTCAGCATCTCCTTCTGCATACCGGCGAGCGTATCTATGCGTGCGACGTATGCGGCAAGACGTTTGCTCAAAAGGCTGGTCTCATTTGTCACAGGAAAATTCACTCGGGCGATCTGCCGCCCTTACCGGTGATGCATATCGACCATATACTGAAGGAAttcattaagaaataa
- Protein Sequence
- MQLWKVVDLEGCLCYAFLPVNHISKKTEENQYNQKQIVEILKIGTDNMVNLEITDDNSVIYTDVSNDVYTINTENKKVLSADELDSDEDQLDNKKETKVYTCDKCNISFPMMKMLKFHWDLMHKQDKDIVTFTCSFCTFESTNKSTFYSHINRKHSTNRVIKRRKKPQEYLCNFCGFESPNRRRLKEHLDRKHGSEYKYDCEHCGKKFKVKSDMRLHVRFKHMEDPVVCDICNKTCSNTNSLYVHKKWAHFKPKYKCEICNRRLVTQENLDQHIFLQHESRKSFTCEECGKSFNDNHRLKQHMMTHTGDRPYDCHICGKAFARRTAYRQHLLLHTGKRPYICDICGKAFAQKPGLICHRKCHPGEHPPLPVVHIDHILNDFMKKKPTADIFASEAVTNKTGAKTSTFACKQEKKSQEDCEEKCNPFVCDVCLKYFKSKYLLKRHELTHTAEIMRGCETDVKENSTFTDEVPQKQAPLPCVTCDFRCNKRSTMIAHLAEKHDGIANNDRFAGDKREFTCVVCGLVFTRKESLRSHFIRKHTQHYAYSCEHCGKGFKVKGDLTTHTRLNHQESPVVCGVCGKTCRNSHSLYTHQKHAHYKAKYECPLCHRRLVTQQNLDQHLLTQHERKEKSVCEQCGKTFFENYDLRKHMRIHTGDKPYNCTVCGRAFARHSSLSQHLLLHTGERIYACDVCGKTFAQKAGLICHRKIHSGDLPPLPVMHIDHILKEFIKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -