Basic Information

Insect: Acromyrmex echinatior
Gene Symbol: -
Assembly: GCA_000204515.1
Location: NW:872976-886026[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 2.3e-05 0.0014 18.3 0.6 1 23 352 375 352 375 0.98

2 18 0.0029 0.18 11.6 0.7 1 23 391 413 391 413 0.97

3 18 3.2e-05 0.0019 17.8 1.0 1 23 439 461 439 461 0.97

4 18 0.0097 0.58 10.0 3.2 1 23 470 492 470 492 0.98

5 18 0.00024 0.015 15.1 0.2 1 23 547 569 547 569 0.97

6 18 8.9e-06 0.00054 19.6 0.8 2 23 575 596 574 596 0.97

7 18 6.5e-07 3.9e-05 23.1 0.7 1 23 602 624 602 624 0.95

8 18 0.0029 0.17 11.7 0.3 1 21 630 650 630 651 0.92

9 18 1.7 1e+02 3.0 1.3 2 23 687 708 686 708 0.94

10 18 0.00011 0.0069 16.1 1.6 2 23 723 744 722 744 0.97

11 18 0.00049 0.03 14.1 3.0 1 21 750 770 750 772 0.95

12 18 0.00026 0.016 15.0 1.7 1 23 779 801 779 801 0.98

13 18 0.00056 0.034 13.9 1.0 1 23 807 829 807 829 0.97

14 18 0.00045 0.027 14.2 5.9 1 23 840 862 840 862 0.97

15 18 4.9e-06 0.0003 20.4 0.8 1 23 870 892 870 892 0.99

16 18 2.7e-06 0.00016 21.2 0.9 1 23 898 920 898 920 0.98

17 18 4.5e-05 0.0027 17.4 5.9 1 23 926 948 926 948 0.97

18 18 1.1e-06 6.4e-05 22.5 3.7 1 23 954 976 954 976 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	2.3e-05	0.0014	18.3	0.6	1	23	352	375	352	375	0.98
2	18	0.0029	0.18	11.6	0.7	1	23	391	413	391	413	0.97
3	18	3.2e-05	0.0019	17.8	1.0	1	23	439	461	439	461	0.97
4	18	0.0097	0.58	10.0	3.2	1	23	470	492	470	492	0.98
5	18	0.00024	0.015	15.1	0.2	1	23	547	569	547	569	0.97
6	18	8.9e-06	0.00054	19.6	0.8	2	23	575	596	574	596	0.97
7	18	6.5e-07	3.9e-05	23.1	0.7	1	23	602	624	602	624	0.95
8	18	0.0029	0.17	11.7	0.3	1	21	630	650	630	651	0.92
9	18	1.7	1e+02	3.0	1.3	2	23	687	708	686	708	0.94
10	18	0.00011	0.0069	16.1	1.6	2	23	723	744	722	744	0.97
11	18	0.00049	0.03	14.1	3.0	1	21	750	770	750	772	0.95
12	18	0.00026	0.016	15.0	1.7	1	23	779	801	779	801	0.98
13	18	0.00056	0.034	13.9	1.0	1	23	807	829	807	829	0.97
14	18	0.00045	0.027	14.2	5.9	1	23	840	862	840	862	0.97
15	18	4.9e-06	0.0003	20.4	0.8	1	23	870	892	870	892	0.99
16	18	2.7e-06	0.00016	21.2	0.9	1	23	898	920	898	920	0.98
17	18	4.5e-05	0.0027	17.4	5.9	1	23	926	948	926	948	0.97
18	18	1.1e-06	6.4e-05	22.5	3.7	1	23	954	976	954	976	0.98

Sequence Information

Coding Sequence: ATGTCCTCCCTCGACTATTTGGACCTGTGCCGGTTGTGTCTCGTGAAGGACCGCGTCTCCGTGCCGATTTTCGAGGGCGAGGGCGACGTGCGGCAGATTTTCCTCAAGATCACCGCCTGTTTGCCGGTCAAGGTGAACAGGGAAGACAAATTACCTAAGAAGATATGCGATGATTGTGTGTATAAAGTAGAGTTATGTTATCAATTTTGGCATACGACAGCAAATGCTGAGAAACAGTTGCTCCAATGGCTAGGCGAAGTGAATATGGAAGACAAACAGGGTTATAATGTTCTCAATCCGAACGGACTAAAGTCAGATCAGAACAATGAGAACAGGTTAGATGGTACTGTGATGCAACAAGTAAGCGAACATCAGAACAATATGAATATGAGTATGATGGACAACATGAGCCTCAGTATGCCCATGATGATGTCAAGTAATACCCAGCAACAAATAACTTCAGTTCCTATGGACAACAGTGGTAGCTCTGTACAAAATGTTCAACCAGTAGCTGGACCAAGTACGCAAACGACACATGACCAAATCACACAGAATCAAACAGACGCGCCTACGCAACAGGAAGAAGAAGACGAGAGCAGTGATGAAGATGAAAACTCGGACGATGAATGTGATGGAGACGAAGGCCTACctataaaagaagaaagtgaAGAAGATCCTAATAATAGAACTATTGAGCCTACAACATTTGTCAACGTTTCTTTGGCGTGTGATGAAGCAGGACCTTCAGGACTTCAACAACAGAAAATTACAGATATGCCGGAGATAGTAATACCACAAACATCAGATGTGGATCCGAAAACTGGGGAAGGAGGCGAGACCTTCGGTGGATTATCAGGGATGCTGCGTCAAATTCTCTCGCCCTCACCCGAGATCGGGGAGGCCGGTATGTCCGTCAATTGTAATCTCCTACAGACCAACTCGATATTTTCGAACCAATCGTCGATGCTCTCGTCGACGTTGCTTCCCCCGCATTTTCAATCCGTGTGTCCGGACCAGTCTCTGCTTGATCAGGTGCAAATCTTTACTGAGTCTTATCCGTGTCCTACGTGCGGGCTGGAGTTCCGAAGTACCCTTAAGCTAAACTACCACATGCGAACAAGTCACGCCGCGCGTCCGGAATTCGAGCATGGTATCGAGAATCAGCCGCGGTACTCGTGCGCAATCTGCTCGCGGACCTTCGTTGCTTTAAATCACCTGAGGATGCACGAAGTTACACATTCTACGCCCATGCCCACATGCGCGTCAACCTCCGCCAATCTCGCTACATCACCCGGTGGCAACATGGAAAAAACATTCGCCTGCGATCTCTGCCAGGCCAGCTTTCGATATCGCACACTACTGGAACGTCATCGAAGGATGCACCAAGAGATCGGCCAAGAGAAACCCTATTCCTGCCCAAGATGCTTGATGCGCTTCGAAACGCGCAATTTGTATAATCACCACGCGAAAACCCACAGACCGTTGCCGGCGAGTAATGAAAATCGGATAGTCGCGGGTACGAATGCGGTGTCGTCGCCTGTCGATCAGGTGATAACCGGCAATCTCGGTGTTGTCGGTGGCGGTGCCGGCGGCGGTGGAAGTGGTGGACCTGTAATTCCCGTCAAGCCCCTACCTTCTTATCCTTGCGACTCATGTTCCAAGCAGTTTGCGACTGCCGAATCGTTGACCACGCATAAGGCGGTGCACAGATCGCGACCGCTAGTCTGCGACGTATGCGGCAAGGGCTTCACGCATCGCAAGTATTACGTGGTGCACCAGCGCATTCACACCGGCGAGAGGCCGTATCTTTGTGCCATGTGCGGCAAATCATTCACGCAAGCGTCGACGCTCACCGTGCATCGCCGTTATCATACGGGAGAGCGTCCGTATACCTGTACGCTATGCGGAAAGGGATTTGTTACGCGAACGATTATGCTTAATCACATGAAGAAAGATCGGCAGCAATGCGGGTCCAGCGTAATCAAGCAGATCTTCATCAAGCCGGTCAAGCTGAAGCAGTTACAGGCAGAGCCCAAACAATCGAAGAGGAAGTCCTTGAAATGCGAATTCTGTGGCGGCAATTTCATCTGCGAACAGGcttttaatatgcatttaaAGATGCATGAATCTCATTCGGAAGAACAAATACAGCAGGATGAGCAATTAGTTTGCGAAAATTGTGGCTGTACCTTCATGACGATATCAGAGCTGCGTGAGCATCAGAAGAAACACGTTGCCGAAGACTGTTTTAGCTGTGACAACTGCGACTATGTGACCACCCGCAAAGAGAACTTAATCACTCACCAGAAGTGCCACAATGTgtctaattacaaatatcagtGTGAGGAATGCGGCGAACAATTCCAGAGCAAGAGCAACTGTCAGGTACATCTATTGTCGCATGCGAGTGAAAAATCGTTTCAGTGCGACGTGTGTAACGCCACATTTCGCTACCGTCAAGGTCTACGATTGCACTCGAAGCTACATCAACCGGACTATGTACAGCCACAAAGAAAACACCACTGCGAGCTGTGCAACAAGCGTTTCTCTCGGAGACAAGTATTACTGATGCATATGAAGACTCACGACGCGGGACCACAAAACGAATACGTGTGCACGATATGCAGCAAGTCCGTATCCAGCAAGACTTATCTCGCGGTGCATCAGCGCAAGCACACCGGCGAGAAACCTCATGTTTGCGACGTTTGTGGCAAAGGCTTTATTTCGCAGAACTACCTGAGCGTGCATCGTCGCACGCATACGGGTGAGAAACCACATCAATGCACTCATTGCAAGAAAAGGTTTACCCAACGGACTACGTTAGTAGTACATCTACGAGGTCACACAGGTGATCGGCCTTATCCCTGTACATACTGTCATAAATCATTTGCTTCAAAAACGATGCTGAACTCGCACTTGAAAACGCACGCGAAACAAAACGCTCGACAACAACAggaacagcagcaacagcagcaagaAAGTTCGCAACAGGAAGAGGAATCAGTGCCGTACGAAACGGTCACTATAGTGTTATAG
Protein Sequence: MSSLDYLDLCRLCLVKDRVSVPIFEGEGDVRQIFLKITACLPVKVNREDKLPKKICDDCVYKVELCYQFWHTTANAEKQLLQWLGEVNMEDKQGYNVLNPNGLKSDQNNENRLDGTVMQQVSEHQNNMNMSMMDNMSLSMPMMMSSNTQQQITSVPMDNSGSSVQNVQPVAGPSTQTTHDQITQNQTDAPTQQEEEDESSDEDENSDDECDGDEGLPIKEESEEDPNNRTIEPTTFVNVSLACDEAGPSGLQQQKITDMPEIVIPQTSDVDPKTGEGGETFGGLSGMLRQILSPSPEIGEAGMSVNCNLLQTNSIFSNQSSMLSSTLLPPHFQSVCPDQSLLDQVQIFTESYPCPTCGLEFRSTLKLNYHMRTSHAARPEFEHGIENQPRYSCAICSRTFVALNHLRMHEVTHSTPMPTCASTSANLATSPGGNMEKTFACDLCQASFRYRTLLERHRRMHQEIGQEKPYSCPRCLMRFETRNLYNHHAKTHRPLPASNENRIVAGTNAVSSPVDQVITGNLGVVGGGAGGGGSGGPVIPVKPLPSYPCDSCSKQFATAESLTTHKAVHRSRPLVCDVCGKGFTHRKYYVVHQRIHTGERPYLCAMCGKSFTQASTLTVHRRYHTGERPYTCTLCGKGFVTRTIMLNHMKKDRQQCGSSVIKQIFIKPVKLKQLQAEPKQSKRKSLKCEFCGGNFICEQAFNMHLKMHESHSEEQIQQDEQLVCENCGCTFMTISELREHQKKHVAEDCFSCDNCDYVTTRKENLITHQKCHNVSNYKYQCEECGEQFQSKSNCQVHLLSHASEKSFQCDVCNATFRYRQGLRLHSKLHQPDYVQPQRKHHCELCNKRFSRRQVLLMHMKTHDAGPQNEYVCTICSKSVSSKTYLAVHQRKHTGEKPHVCDVCGKGFISQNYLSVHRRTHTGEKPHQCTHCKKRFTQRTTLVVHLRGHTGDRPYPCTYCHKSFASKTMLNSHLKTHAKQNARQQQEQQQQQQESSQQEEESVPYETVTIVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -