Basic Information

Insect: Acromyrmex charruanus
Gene Symbol: -
Assembly: GCA_017607545.1
Location: JAANIC010005802.1:106796-115896[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 1.2 60 3.5 0.5 1 23 161 186 161 186 0.96

2 17 1.7 87 2.9 0.6 3 23 201 221 200 222 0.79

3 17 2.3 1.2e+02 2.5 2.4 1 23 228 250 228 250 0.96

4 17 0.0024 0.13 11.9 0.3 2 23 256 277 255 277 0.97

5 17 1.4 74 3.2 9.0 2 21 560 579 559 582 0.94

6 17 1.8 91 2.9 1.0 1 23 648 670 648 670 0.82

7 17 1.4 73 3.2 1.1 2 23 848 869 847 869 0.96

8 17 0.02 1 9.0 0.4 1 23 884 906 884 906 0.97

9 17 0.0075 0.39 10.3 0.2 1 23 914 936 914 936 0.98

10 17 0.13 6.6 6.5 1.0 2 23 1029 1050 1028 1050 0.95

11 17 0.11 5.6 6.7 0.8 3 23 1062 1082 1060 1082 0.96

12 17 0.0024 0.13 11.9 0.2 1 23 1159 1181 1159 1181 0.98

13 17 0.027 1.4 8.6 0.3 1 23 1255 1277 1255 1277 0.97

14 17 3.1e-05 0.0016 17.8 0.9 1 23 1283 1305 1283 1305 0.97

15 17 0.0041 0.21 11.2 2.6 1 23 1368 1390 1368 1390 0.97

16 17 0.0014 0.072 12.6 2.2 1 23 1396 1418 1396 1418 0.99

17 17 1.8 92 2.9 0.6 2 23 1509 1530 1508 1530 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	1.2	60	3.5	0.5	1	23	161	186	161	186	0.96
2	17	1.7	87	2.9	0.6	3	23	201	221	200	222	0.79
3	17	2.3	1.2e+02	2.5	2.4	1	23	228	250	228	250	0.96
4	17	0.0024	0.13	11.9	0.3	2	23	256	277	255	277	0.97
5	17	1.4	74	3.2	9.0	2	21	560	579	559	582	0.94
6	17	1.8	91	2.9	1.0	1	23	648	670	648	670	0.82
7	17	1.4	73	3.2	1.1	2	23	848	869	847	869	0.96
8	17	0.02	1	9.0	0.4	1	23	884	906	884	906	0.97
9	17	0.0075	0.39	10.3	0.2	1	23	914	936	914	936	0.98
10	17	0.13	6.6	6.5	1.0	2	23	1029	1050	1028	1050	0.95
11	17	0.11	5.6	6.7	0.8	3	23	1062	1082	1060	1082	0.96
12	17	0.0024	0.13	11.9	0.2	1	23	1159	1181	1159	1181	0.98
13	17	0.027	1.4	8.6	0.3	1	23	1255	1277	1255	1277	0.97
14	17	3.1e-05	0.0016	17.8	0.9	1	23	1283	1305	1283	1305	0.97
15	17	0.0041	0.21	11.2	2.6	1	23	1368	1390	1368	1390	0.97
16	17	0.0014	0.072	12.6	2.2	1	23	1396	1418	1396	1418	0.99
17	17	1.8	92	2.9	0.6	2	23	1509	1530	1508	1530	0.96

Sequence Information

Coding Sequence: ATGTTTCCTGCGGCAGGCAAGGGCGAGCGAAGAAGTTTGCGCGGAAGCGCGCGGCTCTCGTCCAAGATGTCGGGAAAGCTGCCCCGGTTGCGTGTATTACGACCGCGGCAGCAGCACCAGAGGCGAGCGAGAACAACGGAgcccgtcgccgtcgtcgacGCCGCGACGTCCGCGACGCCGAGACCGGAAGGTAACCTTAAAGGAGCCGTAGCGAGTCACGAGGTGGAACACGATGCGAAGAGAAACGATGCGAAGAAGGGCGAAGACACGTTCGCGTCCGGCGCTATGACTGCTGTGAGCAAGACGAGCGAGATGGACGAGGATGACAACGACAGCGAGCTGACGATGACCGCCGTCGACGAGGAGGCGACAACATCGCTGGACGGCAACATTGACATTgacgtcgacgtcgacgtcgacATCGCCGTCGCGGTGAATTCCGAGGAGACGATCAACATCGACACGAACGAGCGAGCGTCTTACGAGTGCAAGACCTGCAAACCACCGAAAATGCTGTCCAGTATCAAGGCCTACTTCGAGCACCTGCGAAAGGACCATAAATATAAGgGCAAAAATGAGCACAGTCCAGTTGAAAATCGTTGCCCTGCGTGCTCGTATGTTGCATTGAACGTGAAAGATCTTGAAAATCACCAAAGAATGCAtcatttgaaaagaaaattctttcgaTGCGCAAAATGCGATTACGTGACGCATATCAAAGCGCGTTATGCTAAGCATGTTAAATATCATTCTATGCCGATGATCAAGTGCGATGCTTGTGATTTTAGTTCAGCGTATAAGTGGAATCTAGATAGACACATGCGGAATCATGGAGGTGGAGGTGCTTTCAAATGTCGTGCATGTAATTTTACTGCTGATATCCGTCAGAGCTTAACGGTGCATGAATCGTATCATCATGACCCACCTGTGGGTCAgatcaacaaaaataataacgatttCGAACGTAAGCCACGAAATAGTCCAAGACGTTATAATCAGGTTGGAGCCAGTGACTTTCGAGAAGCGTTGCATAAAAGTGGAAGTACAACCACATCAGCCGCTTCTTCTGACTCGTTCGTATCAGatcattcattaatttcaatagaCGATAAGAAAAGCGCCTTGGCTAATGCAGAGTGCATTGCATTAAAATGTGAAGAAAAGGGCTGCCAATTTATAACAGCTTGGGATTCCGAGATGCAACGCCATTTAGCAGAATGTCACGCGCCAGTTATCTCATCAAAGCCAAGAAAGCCACTGCCGATGTTAATTCCACTGAGCCTAGCGACTACCAAGTCCAATAACACTTTCAACAACAGCGGACCATCTACAACCCTGCTGAAAGTTCCACGCGTTAGAGTGAGACCTGAATTGGCGCAAATTGCGAAAGAGACGGAACTCGCCAAGATGTACGGAAACAAGGGGGCCGCGAATTCGAAGAGGAATCTCAATACTGTGACTGGTGTATTTGAGAGAAAGAATGCCTCCTTCTTCGataaattaaaggaaaaacTAACAACGACAGCGACGTCGATTAATAACAGTGTGCCAGAGGTAGCTGTAAGTAATGAGAACGACTTGAAATGCTGGTGTACGTTTAAAGCTAGTAGCATGGAAGAGCTAACTTGCCACAAACAGACGCATCACACTGCCCTCAGCGTGTCCGTGGGCACGACACGTTGCCCTAAATGTAGAAGACGGTGCAAGAGTACAACCGATCTCCAAATGCATATGCAATGCTGTCATTCGCGTGACGACACGACGCCGTCCATCGATAGTAGTTTAGAGAAAGTAACGAATCGCTCGGACATCCGCATGATCTCGTACCGTGACGAATTCTCTTTTCCATCGCAAATGGAATGGGATGCCAATCTCAGAGGATCAAATTTTTCTGGACCTCCGTTTGAAGGTGGTCCGACACATCCGAGCAAGCGGCGAGTATTCAAATGTCCCCATTGTCCATTTTGGGCTTCCACCGCAAGTCGCTTTCACGTACATATAGTCGGTCATTTAAACCGGAAGCCATTCGAGTGTTCAATGTGCGCGTATCGTTCTAACTGGCGATGGGACATCACAAAACATATTAAGCTTAAAGCGGCTAAAGACGCAGTGCATACGAGAGCCAGAGTGCTCATGACGGATGAGACAGGTCGACGGAATTATtccaaatataacaaatatctcGCACAGGTAGAACAGCAATCGTGGGATGAGGATCATATGGAGCAGCGCAGCATAGAAGAAGCAAATTCTGAAGAATTgtcatcaaaattattgattgtGGGCAATAAAGAGTATGTTCCGATGACTAGTTCAGCACCACAATCTCCCATCacaattttatcaacaaaCGAGACTAATCAAAATAGTCATACTGTAGATAGGCGAGCTCCACCACCACTCAAAGCAGCGGTTAGAAATCGCGGGCaatctttgttaaaaaacaATCCTATCACGATGCATGTACAGACTTCTAGTGGTGGTGGTGCGGTCTCTATATCTACAGCAATAGATGAGAGTAAACGCACTCAGAATCAGTGGAGGTGCAAACGTTGTAATTATCGAGATAGCaacaaagataatatattgctgcaTGTTAAATCTCATTACGAATCTACCAACCAGGAATCTGTTGAAGAAAGAAATCTATTTAGTTGTGAGGAATGTCCGTTTTCGGCATCGGATGCTGCCACTCTGTCCATTCACAAGAAGCACCATCGGCCGAACTTAGATGCTATATTTAAATGCTATCTTTGTCCATACTACGTTAGTACAAAGGCAGAACTGTTGGAGCACGCTAGACTTCACGGAGAAGAATTGGCAGCTATGCATCAACAGAATATGGATTTCCCATTATCCAGTCCCAAGAGTAAACAGCCACAAATATCAATTTCTGAAGGCaGTACTTCTCGAACAAAAGACGAATCGTCTATCGAACAAGTGATTCAGATAACATCACGTAACAATGTAACATCTCCAAAAATCACAGGATCTCTGCCGTCGCTTCTTTTGGACACTCGTGCTCTTCCGGATGCTCCACTGGTTTGGGTATCACGACCAGATGGCACACTAACGAAGATGCTCAAGTGCCGTCATTGTCCGTATATTTCATCGCGACGTGCGGAAGTGCGCGACCATGAAACAATGCACGTAGACATGCCAACTCAGGGTCCCTTGATTGCCTGCACCGATTGTAGCTTTACTTGCACGCGTCGGGAAGTCATGATCGCACATACAGAAATGCATACAGGATCTCTCGGTACTGTGCACTGTCTTTTCGATCAAACGCGACCTGATTCTCAACAAGTGAGTGATCTGATCACTCTACTTGGCTTGACGCACACTCCCATGCTAGGCACCGAGCCTGATCTACAGGATTCTCGTCTGGTGCACTGCTGCGGCAAATGTCCAGCACGATTTCTATGCGAAAAGGAGTTGCGTATCCATCTGCGTTACCATACCACATTATTAGCATATTCATGCCAATGGTGCTCATATGCAGCGCGACAACCGGCGCACCTGTTAGCTCATCAAAAGGCGCACTCATCAGAATATCAAGAGCGTACCAAATATCTATTGACCTTGTACGGCCACTCGCAGCGTTATCCACCGCCCACGACAGCGTGTGTTGAAGTGGAGACTCGAGAAAATAATGACAGTGCGCTGAACGTCGCGTGGATTGTTGTTGAAATCAATGAAAATTCAAACAGTTATAACAGTGTCAATGGCACGACGGACACCGTTCAAAGGACCGGTCAAGTGTTTACGTGTGCTAAGTGTCCGGCTCGTTACTTCAAATTGGATGCTTTGGAGTACCACATGACGCTTCATGGTTCAAACAATCGATACAAATGTAATGACTGTGATTATTCATCAAAAACggaacaaaatttattaaaacatcaGGTAGTACATCGACGACATAATGAAACCAGTCAAGCAACTGCGGAGCTGTCATCTACCATAGATTCCGCTTCAACATCCTCTCCCGGATCTCCACTGCAGTCACCTCCGGATCCACAATTTGGTGTGTTTATGCGCGGCAATCCTAATTTTGTTTATCCAGGTTACCTACGGAATGGTCGTCTGAAGGAAAAACGTTACAAGTGTCACAAATGTCCATCCGCTTTTGAAAAGCGTGAACAATATAGAGTTCATCTGACTTTGCATGGGGCGAAACAACGCTATCGCTGCACTACGTGCGACTATTCGGTCAAATATTATGCCAATTACGTACAGCATCTGAAGAAGCATCAGGCAAACGCAGAAGCACAGGCATCTCGGAGACAATTTGAGGATGATCGGATTTCAATCGATAGCGATAGCACTGACGTTGTATCGGCATCATCACGTAAGTCGTCGAGATCATCTGCTGCTGCTAATATGATCGCATTTTCTTTCGCTAATAATGCGTCCAATAACAATGCTGCGCTACAACCTTCTAATCAGGATAAGCAGAGTTTATTGTTAATGCAAAAAAAGGGTATCATTTCGTCAACGGGCGACGCCGATGTGGAGATGATTCGCTGCCAGAGCTGCCCGTTCTCCACCATCGATAAGGATGTCATGGATTCACACAAGCGTCGCCATGGTATTGAACGCATGACGCCGCCGTGCCCGCATTGCGATTACATTCCGCGAAAAGACGAAAACGTCGGTGAACATATTAAACTGCACTTCACAAGATTGTACAAGCCTGAGTCCTATCTTATTGTCGAAATGCTGACGCTGACAACGGAGAAAATATCTGCGAACAACAAAAATGATAGGGGTCAACGATTGAAGGAACTACTGTTCAAGGAATGCGCCGATGGTAGATTCCTACCGCTCACCGAAACGATTAACACTTATACTTTAGGTACCTCCTCTTCAAAAGTAAAAACTGCCAAGGAGAAGATTATTATAGATTCAAACACAGGCGAGACCAAGCATCGTCTTGCCACG
Protein Sequence: MFPAAGKGERRSLRGSARLSSKMSGKLPRLRVLRPRQQHQRRARTTEPVAVVDAATSATPRPEGNLKGAVASHEVEHDAKRNDAKKGEDTFASGAMTAVSKTSEMDEDDNDSELTMTAVDEEATTSLDGNIDIDVDVDVDIAVAVNSEETINIDTNERASYECKTCKPPKMLSSIKAYFEHLRKDHKYKGKNEHSPVENRCPACSYVALNVKDLENHQRMHHLKRKFFRCAKCDYVTHIKARYAKHVKYHSMPMIKCDACDFSSAYKWNLDRHMRNHGGGGAFKCRACNFTADIRQSLTVHESYHHDPPVGQINKNNNDFERKPRNSPRRYNQVGASDFREALHKSGSTTTSAASSDSFVSDHSLISIDDKKSALANAECIALKCEEKGCQFITAWDSEMQRHLAECHAPVISSKPRKPLPMLIPLSLATTKSNNTFNNSGPSTTLLKVPRVRVRPELAQIAKETELAKMYGNKGAANSKRNLNTVTGVFERKNASFFDKLKEKLTTTATSINNSVPEVAVSNENDLKCWCTFKASSMEELTCHKQTHHTALSVSVGTTRCPKCRRRCKSTTDLQMHMQCCHSRDDTTPSIDSSLEKVTNRSDIRMISYRDEFSFPSQMEWDANLRGSNFSGPPFEGGPTHPSKRRVFKCPHCPFWASTASRFHVHIVGHLNRKPFECSMCAYRSNWRWDITKHIKLKAAKDAVHTRARVLMTDETGRRNYSKYNKYLAQVEQQSWDEDHMEQRSIEEANSEELSSKLLIVGNKEYVPMTSSAPQSPITILSTNETNQNSHTVDRRAPPPLKAAVRNRGQSLLKNNPITMHVQTSSGGGAVSISTAIDESKRTQNQWRCKRCNYRDSNKDNILLHVKSHYESTNQESVEERNLFSCEECPFSASDAATLSIHKKHHRPNLDAIFKCYLCPYYVSTKAELLEHARLHGEELAAMHQQNMDFPLSSPKSKQPQISISEGSTSRTKDESSIEQVIQITSRNNVTSPKITGSLPSLLLDTRALPDAPLVWVSRPDGTLTKMLKCRHCPYISSRRAEVRDHETMHVDMPTQGPLIACTDCSFTCTRREVMIAHTEMHTGSLGTVHCLFDQTRPDSQQVSDLITLLGLTHTPMLGTEPDLQDSRLVHCCGKCPARFLCEKELRIHLRYHTTLLAYSCQWCSYAARQPAHLLAHQKAHSSEYQERTKYLLTLYGHSQRYPPPTTACVEVETRENNDSALNVAWIVVEINENSNSYNSVNGTTDTVQRTGQVFTCAKCPARYFKLDALEYHMTLHGSNNRYKCNDCDYSSKTEQNLLKHQVVHRRHNETSQATAELSSTIDSASTSSPGSPLQSPPDPQFGVFMRGNPNFVYPGYLRNGRLKEKRYKCHKCPSAFEKREQYRVHLTLHGAKQRYRCTTCDYSVKYYANYVQHLKKHQANAEAQASRRQFEDDRISIDSDSTDVVSASSRKSSRSSAAANMIAFSFANNASNNNAALQPSNQDKQSLLLMQKKGIISSTGDADVEMIRCQSCPFSTIDKDVMDSHKRRHGIERMTPPCPHCDYIPRKDENVGEHIKLHFTRLYKPESYLIVEMLTLTTEKISANNKNDRGQRLKELLFKECADGRFLPLTETINTYTLGTSSSKVKTAKEKIIIDSNTGETKHRLAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00127818;
90% Identity: iTF_00181621;
80% Identity: -