Basic Information

Insect: Acromyrmex charruanus
Gene Symbol: -
Assembly: GCA_017607545.1
Location: JAANIC010003213.1:310760-315781[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 1.1 59 3.5 4.6 1 20 159 178 159 180 0.92

2 15 2.2 1.1e+02 2.6 0.3 2 17 188 203 187 204 0.87

3 15 0.018 0.93 9.1 4.8 1 23 221 244 221 244 0.92

4 15 0.005 0.26 10.9 1.1 1 23 604 627 604 627 0.94

5 15 0.45 23 4.7 0.7 5 23 634 653 633 653 0.94

6 15 0.22 11 5.7 0.8 2 23 659 680 658 680 0.97

7 15 1.2e-05 0.00064 19.1 0.1 1 21 860 880 860 881 0.96

8 15 0.0002 0.01 15.3 0.1 2 23 888 910 887 910 0.92

9 15 0.26 14 5.5 7.0 1 23 920 943 920 943 0.94

10 15 0.17 9 6.0 0.2 2 21 970 989 969 990 0.91

11 15 0.76 39 4.0 7.7 1 23 1031 1054 1031 1054 0.91

12 15 0.037 1.9 8.2 7.1 1 23 1126 1149 1126 1149 0.96

13 15 3 1.6e+02 2.1 0.1 1 9 1158 1166 1158 1170 0.84

14 15 0.2 10 5.9 0.4 1 23 1244 1267 1244 1267 0.95

15 15 0.0072 0.37 10.4 1.5 2 23 1294 1316 1293 1316 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	1.1	59	3.5	4.6	1	20	159	178	159	180	0.92
2	15	2.2	1.1e+02	2.6	0.3	2	17	188	203	187	204	0.87
3	15	0.018	0.93	9.1	4.8	1	23	221	244	221	244	0.92
4	15	0.005	0.26	10.9	1.1	1	23	604	627	604	627	0.94
5	15	0.45	23	4.7	0.7	5	23	634	653	633	653	0.94
6	15	0.22	11	5.7	0.8	2	23	659	680	658	680	0.97
7	15	1.2e-05	0.00064	19.1	0.1	1	21	860	880	860	881	0.96
8	15	0.0002	0.01	15.3	0.1	2	23	888	910	887	910	0.92
9	15	0.26	14	5.5	7.0	1	23	920	943	920	943	0.94
10	15	0.17	9	6.0	0.2	2	21	970	989	969	990	0.91
11	15	0.76	39	4.0	7.7	1	23	1031	1054	1031	1054	0.91
12	15	0.037	1.9	8.2	7.1	1	23	1126	1149	1126	1149	0.96
13	15	3	1.6e+02	2.1	0.1	1	9	1158	1166	1158	1170	0.84
14	15	0.2	10	5.9	0.4	1	23	1244	1267	1244	1267	0.95
15	15	0.0072	0.37	10.4	1.5	2	23	1294	1316	1293	1316	0.95

Sequence Information

Coding Sequence: ttatatgtttttcagCTTGGTATAGAAATCCAAAATGGGACGAAGATTAAGGAAGAGCCTATCGATACAACTTCGAATACTGATACAACTGAATATGATACTCCTATagttagaaattattatagtttaattgATCATGATCATCATTATTGCGACAAATCATTATCTAATAAGTCATGTAAAAGCATAAATAACCAAGAAAACAGACATTCATCGAATGATCATAATGTATATTCAAACGACGTAACTAATACTGTTAATACaaatcgtaaaaatgtaaaaacaaagaaagacATAGATAATACCTTACCACGTTTTAAGAAACGAAAATATTCCAATGAAATCTTTAGTAATAAAAACACTAGTGCATTATGTTCAGTAACCAAAAATgttaagagaaaaaggaaacaaaAAAGCATTACATtagactataaaaaaaaaatacaatgtaagaataaattagtaaaaaaggAATTTACATGTGACATATGTTTTAGGAAATTCAGTTGTCTTTCACATTGGAAAATCCATAAACAATATTACGAACttgataaaagtaataagtgcagggtttgtaataaatatttcatagctAACGACAAATTACAGTCTGATACATGTCATTGCGTTCATAGCATGCGTAGTACATACTTATCTTCatacaattgtaatttttgcagTCGtacttttaagaaaaaattgcttttacaATCCCACTTATTTCATGTacataatgaattaatatgttttaatgacACTGTTAAACGTGAGATTTCCAAATCCAAGATCTTTAATGTAAATACATCTCCTGAAGATGATATTTTAAGAACtagtgcaaataaaaattcattatgttCAAATAATCTTGTTCAATCAGAAGAGATAGATACTCTTATAAACGTAAATAAATCTCGTAACGATGATGTGATTAATATTGAGAAATCCAGAAccgaaaaattaatcaataatgaaGTGTCGCCAACTAAAAGATTACGGCAACCAACATTAACGGAATATCTTGAGCTTTGCAAAAAGAAacgcaatattaaatttagtcCAAGTAAATTGAACATTACAAAAGATGATTTTCCTACGTGTGCTTTACGTCATGATGATCAAATAGAAAAACTTCCAGAAGAACAAAATGGACAAATTGATCCTTTATCTACACAATCAGATAATCTAAAACGAACAGTACGTTCTATTCAGAaacaaaatatgaaacatGAAATGCATAAAAAGCCATTTGTAAAACTACATGCAGATGTTGAAATGATGAAGTCTTTTCTGGAAAAACTTTCTGATACGGTTGTCGAAGATAAAATAACCGAAGATGGaacaagtaatattatttcatatgatCGTGGAATACCTTACAGTTTACGATCTTTAAATGGAGTCTCTTCCGGGGAAGCAAGTTCAAATTTAGGAATGAGGGAGAACAAAAGTGTATCTAAGAAGTCTCGATTTGGtacagaatttaatattaaaaataaaggaaacgGGATTCATTTAGAAAAGATAACTTCTAAAGTGgattggaaaattattatgactcattttaaatgcaaggagtgtacaatttttttaacaagatgTGATGAACAACCAAGAAATTCTTATCAAATTTCTGCTTTTAAAgccaagaaaaatatttgtcttacTCCTGGATGCAACTTTCAAGAAAGTGATGTACGAAATGAAGTAAAGCTAAAAGACGTAGAGGTTTCTTTGGAACGTTTAACAGTTGTTCCAActgtacatataaaagaaaaaacaccAGATGTCGAGaaacacaataataattattttttgtgtaaagTTTGTAAGGAGagtttttcttcaaaattggCCAAACGTATACATATTAAGTCGTCTCATATAGCATATATGTCAAGCATATGTGGTGCACGTTATAAGTTGAAGCATAAATTACTTCAGCATTATCTACGCGAACATGTTTCTAAACAAAATCAATGTTGTAtttgttatatgttattatctGATTATGAAGCGTTGAAGCAACACTTAAATGTTCATTGTCTGAAGTATATTCAACGACAGGATGAccaatatttaatagatactGAATTAGAATGCAACTTAAccaaaaaatctaaatatctTCGTGACGAGACATTTTTGTCACAGACATCTTTGAAAGAACATCAAAGTCATTGTACAgtacaaaaagaaatagaagaagaTCAGAAAGGTTCCATGGAAGAAACAAATTCATCCCCGAAGGATATTCCTGAAGTACAGCACGAGAAGACCGATGATATAGTTGACATAACATgtcatgaaaaaattaatctggATGATTTATGTAATCCATTAAATAGTGACtgtgtaaaaaaatcgaatgaatatcaaatatcgcttcataataaaaaagaacaagaaattaatgaagCTAATCAAAACATTCttgttaataataacttaattaagGAGGAAATAGGAACTATTAACGAATCGCAACACCCTAAAAAgcttttggaaaataatttcacaattaataATCAAGATGTCGCGAATAcacaattgaataatattgcaacaaaGAATGGAACTTATCCCTGCGATATATGTGGAAAGCAATTTCAAACTCCCAAAAATTTGGAGATACATGTACGCAATTTTAGTTTTACCTCCGATGTTTGTCCATTGTGTGGCACTGGATTTAGTTCTAAACGTTTTTTACAATCACATATCACTGCAGCGCATGTACCacatatttcaaaaacttACAATTTTCATTGCGTATTCTGTAACCaaggtttttttaaaaaacacgaTCTTCGGTCTCATATATTACACTTACACGATCAACAAGTACTCAATACGCTCACATGCAATTCTAATAATCAAGAGAAATCCAATGAATCAGTTACTCATAGCACAGTATGTAATGTTTGTAATTTGGTATTTGAAACTCATGATCGCTATGTTGAACATCGAAtgtactattataaaaatcatacatTTAGGTGCTCACTCTGTGAACAAAACTTTCAAGGAATGTACATGTTTCATCATCATAACAAACTTACACATTGTCCAGAAGACAAACGCAAATCATACAATCACATTTGCGAGGTATGCCATGAGGGATTCAATCATGAGTCACATTTTTATTCGCATAATATGCATGTGCATTCGAATGAAGTGAATTTAGGTGAGACTGCAAAAGAATCTGAAGATACCAAGAATAGAAGCCGGAATTCATCCAACGTCCAGAAACAGATTAGAAATTGTTCTATGGatcaagaaaaacaaaatgaacaaTCCAATGAGTATATTTGCCAAATTTGTCAGAtgaaatgtagaaatattgtaatgcacaaagaattttattccaatGATGGCGATTTTAAATGTGACAAGTGTAATAGACGATGCAAAACATTCGATTTTCTTAATcaacataagaaattaacaCACTCTTGTCGGGATGTTTATAATGGACATATATGTCACATTTGTGGTGAAGTCTTGGAGACAGGTTATGAAATTCCTTTAAAATCTGGTTCGACCAATGGATTTAAAACTAACTCATTAGCTAAGggatctataataattaataaatccaaAACAGTACCTGCATATCTTTTACCAACTAAAACCCTATCAACATTCAAACGTATTATGCCAAAACCTTGGAAAAGCAATGAAATTACAAATCagaaatctgaatcagtgaacAGTTACGCCACTGGTCATGGTTATTCATGCCCATTATGTCCACTAGAATACCCATCTTTGCTGTTCTTCCATGCACATCTCAAATATGCTCATGCAGATTCCATCGTTTCCATTCAAACTGATGAATTGACTGCCCCACAGGTGAATAAATCTCAGAAAGCCTCTATGATAGAATGTTTGTTGTGTCCATGTACTTTCCCTGATGAGACCAAGTATAAGAAGCATTTGAGAAACTCTCATacatattatgtgtatatccCAAATTCTCAAGAGATGACGAAAATTAATAACGTACGTAATCCTCTAACACAGACAAACGTTGACAAAAAAAGCATAGTTCTTGAAACAATTACTAtagatgatgatgatgataacgTGAAGAATACATCAAATCAAGGAGCAGTCGAAGTTACAGCGCTCAATTACAAAGAACAGAATGAGAAAATTGGTAAATTAAGAGTGAAGCCTCTTGCAAAgatcattgaaaatttatctatgGATTCTGCATCGAAActctta
Protein Sequence: LYVFQLGIEIQNGTKIKEEPIDTTSNTDTTEYDTPIVRNYYSLIDHDHHYCDKSLSNKSCKSINNQENRHSSNDHNVYSNDVTNTVNTNRKNVKTKKDIDNTLPRFKKRKYSNEIFSNKNTSALCSVTKNVKRKRKQKSITLDYKKKIQCKNKLVKKEFTCDICFRKFSCLSHWKIHKQYYELDKSNKCRVCNKYFIANDKLQSDTCHCVHSMRSTYLSSYNCNFCSRTFKKKLLLQSHLFHVHNELICFNDTVKREISKSKIFNVNTSPEDDILRTSANKNSLCSNNLVQSEEIDTLINVNKSRNDDVINIEKSRTEKLINNEVSPTKRLRQPTLTEYLELCKKKRNIKFSPSKLNITKDDFPTCALRHDDQIEKLPEEQNGQIDPLSTQSDNLKRTVRSIQKQNMKHEMHKKPFVKLHADVEMMKSFLEKLSDTVVEDKITEDGTSNIISYDRGIPYSLRSLNGVSSGEASSNLGMRENKSVSKKSRFGTEFNIKNKGNGIHLEKITSKVDWKIIMTHFKCKECTIFLTRCDEQPRNSYQISAFKAKKNICLTPGCNFQESDVRNEVKLKDVEVSLERLTVVPTVHIKEKTPDVEKHNNNYFLCKVCKESFSSKLAKRIHIKSSHIAYMSSICGARYKLKHKLLQHYLREHVSKQNQCCICYMLLSDYEALKQHLNVHCLKYIQRQDDQYLIDTELECNLTKKSKYLRDETFLSQTSLKEHQSHCTVQKEIEEDQKGSMEETNSSPKDIPEVQHEKTDDIVDITCHEKINLDDLCNPLNSDCVKKSNEYQISLHNKKEQEINEANQNILVNNNLIKEEIGTINESQHPKKLLENNFTINNQDVANTQLNNIATKNGTYPCDICGKQFQTPKNLEIHVRNFSFTSDVCPLCGTGFSSKRFLQSHITAAHVPHISKTYNFHCVFCNQGFFKKHDLRSHILHLHDQQVLNTLTCNSNNQEKSNESVTHSTVCNVCNLVFETHDRYVEHRMYYYKNHTFRCSLCEQNFQGMYMFHHHNKLTHCPEDKRKSYNHICEVCHEGFNHESHFYSHNMHVHSNEVNLGETAKESEDTKNRSRNSSNVQKQIRNCSMDQEKQNEQSNEYICQICQMKCRNIVMHKEFYSNDGDFKCDKCNRRCKTFDFLNQHKKLTHSCRDVYNGHICHICGEVLETGYEIPLKSGSTNGFKTNSLAKGSIIINKSKTVPAYLLPTKTLSTFKRIMPKPWKSNEITNQKSESVNSYATGHGYSCPLCPLEYPSLLFFHAHLKYAHADSIVSIQTDELTAPQVNKSQKASMIECLLCPCTFPDETKYKKHLRNSHTYYVYIPNSQEMTKINNVRNPLTQTNVDKKSIVLETITIDDDDDNVKNTSNQGAVEVTALNYKEQNEKIGKLRVKPLAKIIENLSMDSASKLL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00016952;
90% Identity: iTF_00016952;
80% Identity: -