Basic Information

Insect: Acromyrmex charruanus
Gene Symbol: rhi
Assembly: GCA_017607545.1
Location: JAANIC010005865.1:446441-448732[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.021 1.1 8.9 5.3 1 23 401 423 401 423 0.98

2 6 0.0055 0.29 10.8 3.8 2 23 428 449 427 449 0.94

3 6 0.0001 0.0053 16.2 1.0 3 23 456 477 455 477 0.97

4 6 2.1e-07 1.1e-05 24.6 0.7 1 23 485 507 485 507 0.99

5 6 1e-06 5.4e-05 22.5 0.7 1 23 512 534 512 534 0.98

6 6 1.5e-05 0.00078 18.8 0.3 1 21 540 560 540 565 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.021	1.1	8.9	5.3	1	23	401	423	401	423	0.98
2	6	0.0055	0.29	10.8	3.8	2	23	428	449	427	449	0.94
3	6	0.0001	0.0053	16.2	1.0	3	23	456	477	455	477	0.97
4	6	2.1e-07	1.1e-05	24.6	0.7	1	23	485	507	485	507	0.99
5	6	1e-06	5.4e-05	22.5	0.7	1	23	512	534	512	534	0.98
6	6	1.5e-05	0.00078	18.8	0.3	1	21	540	560	540	565	0.95

Sequence Information

Coding Sequence: ATGGACCAGGAAAACCCCAGACTAAAACCATCGATCAAGCTCAAAACCAAGTCTGGCAAAGCAACTACCGAAGAAGATGCAGACCTAagtaacaaagaatatattgtcgataaaatattAGCCAAAcAAAATGCAAACCTAAGTAACGAAGAATATAATGTCGATAAAATATTAGCCAAAcgttttaatactaaaaaaagatGCTGGGAATACTTAATCGAATGGAAAGGCAATCCACAGAAAAAACCAAGATTGAAACCATCGATCAAGCCCAAAACCAAGTCTGGCAAAGCAACTACCGAAGAAAATGCAAACCTAAGTAACGAAGAATATAATGTCGATAAAATATTAGCCAAAcgttttaatactaaaaagaGATGCTCGGAATACTTAATCAAATGGGAAGGCTATCCACATGAAAACAATACATGGGAATCTGCAGAGGCTCTAGCAACATGCAAAAGTTTATTGGATGAATTTGAGCGGAGTCACGCCAAGCAAAAAGAGTCTAAAGAAGTGCAACAGAAGGATAATACAAACGTCGTCGGACGTATGAGTTTGCCGTTGCAAAAATCAGTGATAAAAACTAAGACTAGTCAGCCTGGATCAAGTACTGCTCAAACAGGACGCTTAATACggtctaataaattaaaagcgaTAGAACAAATCAAGCAATGGTGTAACTCAATAAAAGATGAAGAGAATGAACTATTAGGTAAAAGGAGGATCGATGATTCGGAGAGTGATTCGGAAAAAGGAGGAAGCAGTGCCGCAAAGGAAACGATAGATGACGCGGGCAGTGATGATGAATGGACTGGGGAATTTGAAGACGAAAGACTATTGGGCCGTAGTGTGATTCAACGTACATTCAATCGCGCTAATTTGCAGTCGAGTGGATTCAACAAAACCTCGATTTCATCCACTGATCTGGCAACGTCATTAGGATTGCAATCTGCAGATGAAGCAAAATCTAGCCAACCACCTGTTTTAGTAATTAACGAGGGGGTTGTTAAAATCGATCCCAAACAAATGCCGAATTTGGCTTCCGATCTCTACGTTATGTCGCGAAAAGACAATATCAGCAAATTGAATTCGTCCCCCATTGAGAAATTAAAGGATCTTGTTATCTCTGTTAAAGGATCTTCAACGACGCAAGGTGTTGTAATGGTTCAAAATCGAGataatacaaatgtaatcACCTACAAATGCGGAAAGTGtaataaaacgtttatttgTGAATTGCATTTGCGCCAGCATGAGAAAATTCATATGAAAAAATCTCAATGCgagttttgtaaaaaaatattTAACAAATCGCTTCTACATAGACACAAGAAAGAAGTCCATTTCAATGTACTTAACGATTGCAACGATTGTAAGAAGGGTTTCAATAATGAACAGGATTTCAATAATCATTTAATCACGAAGCATTCTGACATCGATGCAAGACCGTATAAATGTGAGATATGTCCAGCTGCATTTAAACGTTCAAACGACCTTAAACGGCATACACAAACACATGCAGAGAAACCATATGTTTGCGAGATTTGCAGCaaagtgtttaattttaaaattaacctAATCAAACACAAACGTATACATAGCGATAAAAAGCCGTATAAATGTTCGATATGTAATAAAGACTTCATGCGAAAAGCTAGTCTTCTTACACACATACAAAATGAGGTCATTCatgatataacatttaattcattatcagattcatatttatttttctatttttgttacatattcATATTAGAGTATTATAGTGTACCACATttgatgcataaaaaattatttattttt
Protein Sequence: MDQENPRLKPSIKLKTKSGKATTEEDADLSNKEYIVDKILAKQNANLSNEEYNVDKILAKRFNTKKRCWEYLIEWKGNPQKKPRLKPSIKPKTKSGKATTEENANLSNEEYNVDKILAKRFNTKKRCSEYLIKWEGYPHENNTWESAEALATCKSLLDEFERSHAKQKESKEVQQKDNTNVVGRMSLPLQKSVIKTKTSQPGSSTAQTGRLIRSNKLKAIEQIKQWCNSIKDEENELLGKRRIDDSESDSEKGGSSAAKETIDDAGSDDEWTGEFEDERLLGRSVIQRTFNRANLQSSGFNKTSISSTDLATSLGLQSADEAKSSQPPVLVINEGVVKIDPKQMPNLASDLYVMSRKDNISKLNSSPIEKLKDLVISVKGSSTTQGVVMVQNRDNTNVITYKCGKCNKTFICELHLRQHEKIHMKKSQCEFCKKIFNKSLLHRHKKEVHFNVLNDCNDCKKGFNNEQDFNNHLITKHSDIDARPYKCEICPAAFKRSNDLKRHTQTHAEKPYVCEICSKVFNFKINLIKHKRIHSDKKPYKCSICNKDFMRKASLLTHIQNEVIHDITFNSLSDSYLFFYFCYIFILEYYSVPHLMHKKLFIF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01262047;
90% Identity: iTF_01262047;
80% Identity: -