Acha004511.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Acromyrmex charruanus
Gene Symbol
zld
Assembly
GCA_017607545.1
Location
JAANIC010003477.1:1717886-1720960[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 7 0.00015 0.0077 15.7 1.1 2 23 27 49 26 49 0.95
2 7 6e-05 0.0031 16.9 0.2 1 23 200 223 200 223 0.98
3 7 0.0016 0.085 12.4 2.9 1 23 414 438 414 438 0.92
4 7 0.0019 0.1 12.2 5.5 1 23 840 863 840 863 0.96
5 7 0.00029 0.015 14.8 1.8 1 23 869 891 869 891 0.96
6 7 3.3e-05 0.0017 17.8 6.8 1 23 897 919 897 919 0.98
7 7 7.3e-07 3.8e-05 22.9 3.0 1 23 925 947 925 947 0.99

Sequence Information

Coding Sequence
ATGAGTGAGATGACGAGTGCCGTTGAGAcgcagcaacaacagcaacagTACGTAGACGGTAGTTCGAATGCGAAGCTTCACTGCAAGGATTGCGGTGTAAAATTCGAGAGCGAAAAGAGTCTAGAGGTGCATCTGCGTTATCAACACGAAAATCTGCTAAATCAATGGGCCAATAAGACACAGCAGGAAGAGAGCAATAACAACCATAGCAAGACTGGTAATCATAATAGTCACGTGAGCCGGGACAACGTGCCGGCGGACACGAGTGAAGCATCATCGATGTCGCCCTCTCAAGATTCAACATCCTCGCAACAAacacagcagcagcaacaatcACAACAATCTCACACGCAACAACAGTCTGCTGTACTTATATGTTCGCCATTCGATCATTTTCGAACTCCAATGTATAACGACGGCTACTACATTCAGAACGATCAGCCTTTCATCTTGTCTCATCACTTTTCGCCATCACAGGAAGACGGCCAGAATAACGGCAGTCGCGATGGTAGTTTTCGCTATCATCCGTACCAACATCAGCAATTGTATTCCTCAGATCGCACGACTTCTAACTCTACCAGCCCGCAAAGCCCGCCTTTTCAGTGCGACAAGTGCGGCGCCGTGTATGAGGACACGAATCAATTAGGTGAGCATATGAGAACGAATCATTTGGATTCGCCTACCGCGTATCCATCCGCGCCTCAATATCAGCAACTGGGCAATAGTCCTCAGCAGCAGGGCCAGCAGATGCACCCGTCGCCGCCTCTCTCGAATCAACCGCAACAATCTGGTTACGATTATAATGGAGTACAGACAATCAAGGCCGAAATGAAGCAGGAACAGCCTGAAGAGCAAGCTGAGATCCTTGACTTGGATTCTCATAAAGTACACCGATATGAAGAGGAGATAATGAGAttgcagcagcagcagcagcaacaacaacaacagcagcaacagcagcagcagcagcagcaacaacaacaagGACTTCAGATGCAGATGCATCATCAACAGGTGATGCAACAACAGCAGTCGCAGAGAATAGAATCGCTTTCGGATCAATACATGCGCGGTCAACATATGCCTGTGGAGCACGGGCATCAAGGTTCACCGATACTCGCAAGCACGCAGCCAATACCGAGCCATCAGATATCGGCTGGATTCGTGCAGCAAACACCGAAAGCGCCACCGTTGGCGAATCAATCTTGGAAAAGCAACGAGGCACGCCGTCCAAAGACATACAATTGCACTGCGTGCAACAAGTGGTTTACAAGTTCAGGGCATCTGAAGAGACATTATAACACTACGCTCCACAAGAATGCtgtaaaaaatggaaaagagCCTGATCCAGCAACTTTACCGGTCACCAGTCATCATCATCCCAATAGAGATAATAGCGCTGGTCATTCAACGAGCGGTAGGGGCGGTTGCGCTCCCGCGCGATCTCCACCGGACTCTTCGCGGAGTCCCCCAAACTTGATGGCAGGTCCCTCGGGCGAGGCGACGGGGGGCCTGCTTCACACGCCCACCACGCTCTGCAACAACAATtccagcagcaacagcagcagcgaATCTTTAGCGGTCCTGGTGCAGCAGCAGCATCAGCAGCCGCAACTGATCCCTCTAGGAATAATCAATTCCCCGGTGCCATCGCCACTGGCGAGGCACCATCAGCAACAAATGGGTACTGCGCCTCACCAAATGGGCCtccagcagcagcagcaacttCACCTGCCAACGGGTTCATCGGGCCAGCCGGTGCATCATTCCACGACTTCGCCCACCATGGCCCCACCGGCGGCATCGCACATGAATTGCCCTTCACCAATGGATTCATCATCCCACCCGGTTCATCACATGAACTCGCCGCCCGGCTCGGGCCATCCAGCAATGACTTCATCCACGGTGATGGGGGGTACTACGATGCCTCCTCAGCCGTACCCAAACGCCTTGCCCCCCCACGTTACAATTACTACCAACATCCCGGCGGTCCCACTGGAATCTACCCAAGCACCTACCACCATGCAGCTAGTTACTATTGGTAACAACCAAAACAAGCAGCCACGACGCTTGTTGCCCGGTTTTAATACCATCATGTCGAATTTCTCGGAATTCGAATTTGTCGTAGATCAAAACCAGACACAGACCGTTAACGTGGGGGGGCTCAATGTAGAGGAGATCGCTCCTCAAGAGTCCTTTGAAGCTTCAACATCGACCTATGACCCATTTTCACCAACGCGTTACAAGTCATTGAATAATCTAGACATAATGTTGCAAACAAATGGAAGTAATATGGTGCAGCAAAATCAAGAATCAGAAATGACGTTGTTGAGATATGAATTCAATCGAAAAATTGATATACAGAATAACAATCATCTGCCGATAAGCCAAGCAAAGGAGGATTTGGATCCAAATATCGGCTTGCAGCCAAAGAAAGAGCGtaaaaacaaaagtaataataCGGACAAGCAAGATGTCACCATCATCAATTCTAATTGCATTTCGCAAAACGGCATCTATAAGTGTCTCGATTgcaataagaatttcaacaaGCCCTGCTATTTGACACAGCACAACAAGAGCTTTCATTCGGGCATTAGACCGTTTAAATGCAACCTGTGCGGTAAACGGTTTTCGAACGAAGAGAGGAACCAAAAGCATTCGGAAATGCACGCGTTGGCCAGAAAACATCAATGCAACACGTGCCCAAAGGTGTTCGCACATAAAACTGATCTTAAACGGCACACCTGTATCCACACTGGTACAAGACCCTTTAAATGTGATACTTGCGGTAAGGGATTCATCAGACAAGATCATATGAGGAAACATCAGGAAACACATAACAAAAAAACGCGGATAAACAACCAACGGCAATCCGCTCAGCGAATCAATGCTCAACGAGGCAACGCTCAACGGCCCAACAATGTTCAACGGGTCAACGTTGAACAGTTGGAATTCAATAGCAACTGCATGGAGTTA
Protein Sequence
MSEMTSAVETQQQQQQYVDGSSNAKLHCKDCGVKFESEKSLEVHLRYQHENLLNQWANKTQQEESNNNHSKTGNHNSHVSRDNVPADTSEASSMSPSQDSTSSQQTQQQQQSQQSHTQQQSAVLICSPFDHFRTPMYNDGYYIQNDQPFILSHHFSPSQEDGQNNGSRDGSFRYHPYQHQQLYSSDRTTSNSTSPQSPPFQCDKCGAVYEDTNQLGEHMRTNHLDSPTAYPSAPQYQQLGNSPQQQGQQMHPSPPLSNQPQQSGYDYNGVQTIKAEMKQEQPEEQAEILDLDSHKVHRYEEEIMRLQQQQQQQQQQQQQQQQQQQQQQGLQMQMHHQQVMQQQQSQRIESLSDQYMRGQHMPVEHGHQGSPILASTQPIPSHQISAGFVQQTPKAPPLANQSWKSNEARRPKTYNCTACNKWFTSSGHLKRHYNTTLHKNAVKNGKEPDPATLPVTSHHHPNRDNSAGHSTSGRGGCAPARSPPDSSRSPPNLMAGPSGEATGGLLHTPTTLCNNNSSSNSSSESLAVLVQQQHQQPQLIPLGIINSPVPSPLARHHQQQMGTAPHQMGLQQQQQLHLPTGSSGQPVHHSTTSPTMAPPAASHMNCPSPMDSSSHPVHHMNSPPGSGHPAMTSSTVMGGTTMPPQPYPNALPPHVTITTNIPAVPLESTQAPTTMQLVTIGNNQNKQPRRLLPGFNTIMSNFSEFEFVVDQNQTQTVNVGGLNVEEIAPQESFEASTSTYDPFSPTRYKSLNNLDIMLQTNGSNMVQQNQESEMTLLRYEFNRKIDIQNNNHLPISQAKEDLDPNIGLQPKKERKNKSNNTDKQDVTIINSNCISQNGIYKCLDCNKNFNKPCYLTQHNKSFHSGIRPFKCNLCGKRFSNEERNQKHSEMHALARKHQCNTCPKVFAHKTDLKRHTCIHTGTRPFKCDTCGKGFIRQDHMRKHQETHNKKTRINNQRQSAQRINAQRGNAQRPNNVQRVNVEQLEFNSNCMEL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00181546;
90% Identity
iTF_00016263;
80% Identity
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