Basic Information

Insect: Acromyrmex charruanus
Gene Symbol: -
Assembly: GCA_017607545.1
Location: JAANIC010005639.1:645930-648197[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00067 0.035 13.6 0.6 1 23 348 371 348 371 0.96

2 10 5.1e-06 0.00026 20.3 0.5 1 23 377 399 377 399 0.99

3 10 9.6e-08 5e-06 25.7 0.3 1 23 405 427 405 427 0.99

4 10 0.22 11 5.7 5.4 1 23 433 455 433 455 0.98

5 10 6.7e-06 0.00035 19.9 0.3 1 20 461 480 461 481 0.96

6 10 0.018 0.93 9.1 2.3 1 23 490 510 490 510 0.94

7 10 1.1e-06 5.5e-05 22.4 0.5 3 23 518 538 517 538 0.98

8 10 0.00011 0.0055 16.1 1.4 1 23 544 566 544 566 0.98

9 10 0.00027 0.014 14.9 2.6 1 21 572 592 572 595 0.96

10 10 0.11 5.5 6.7 3.8 3 23 603 624 601 624 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00067	0.035	13.6	0.6	1	23	348	371	348	371	0.96
2	10	5.1e-06	0.00026	20.3	0.5	1	23	377	399	377	399	0.99
3	10	9.6e-08	5e-06	25.7	0.3	1	23	405	427	405	427	0.99
4	10	0.22	11	5.7	5.4	1	23	433	455	433	455	0.98
5	10	6.7e-06	0.00035	19.9	0.3	1	20	461	480	461	481	0.96
6	10	0.018	0.93	9.1	2.3	1	23	490	510	490	510	0.94
7	10	1.1e-06	5.5e-05	22.4	0.5	3	23	518	538	517	538	0.98
8	10	0.00011	0.0055	16.1	1.4	1	23	544	566	544	566	0.98
9	10	0.00027	0.014	14.9	2.6	1	21	572	592	572	595	0.96
10	10	0.11	5.5	6.7	3.8	3	23	603	624	601	624	0.97

Sequence Information

Coding Sequence: ATGATTAGCATGCAGCAGCAAACGATTTTGAATAATGTAACCGGGCCCGAGCAGCCACAGGAAGAAGTGCAGCTGACTGAATTGCTGCCAGTAAAGCAATCGCGTATCAGAGAAAATGTCTTCAAGGATACCGACGCGACCGACGCTCTGAGGGCACTCAGGAGTCTCTCGGGCGATTGCAGCGATGGCGATAGCTTTAACCTGCGAGAATTCAACTTTTGCAAGAACGTCGAACAATTGGAACGTCGGAGCAGCAAGCATGGCAGCAAACCTCGACGAGTGGAGGTTTGTCGcaaaaaaacgaaagaaatcaaGAACAATGTTAAAAACGTAGATTTTTATGAAGAGAAAAACAGCGGGGTGGCGGAGAAGAAAGTGCGTAACAATAGCAAGATCGCTCACGTGAAAGCGCCGAAAAGGAAACTGACGAGCTCGTCAAACAAGAAGAAGGATGACGATAGGGAAAGTAATTATGGAACGAATGAGAAATCGATTGGGAAGAATACTACTGAATGGGACGAAGAATTCGAACATCACTGTGATGAAGAAGATGAGGACGAACAATTGTACTTGGACCTGGAAAAGAAAGACTGCTTTAAGGACGAGATTTACGTATATAGACGGGAACCGTTGGATCCACGCTCGAGTTTGGAGCCAGAGGAACTAGGTGCGATCAATCGTAAGGATTTTTGTGAGGATTATCCCACCACAGATGGAGAATTATTTGATGGAAAGGGAACGTTCGTTGAAAAGATCTCTGACGTAGATAACGTagggaaagaaaaatttaaagtagaTGGCATTACTGAGAAAGACATTCCCGAAAAGGAGCTGAGATTAAAGATCGATGCTATCATTCAAGCGAATTACTTGCTCGAGCGCGAAAATAATAACGTTGTGGGTTCCGACGAATCAAAGATCAAAATCGTAGAGCACATTGGCACCTCCTCTGCTGCTGCGGAAACGAAGAAGACGAAGAGAAAGCGAACTGATCATGAGAAGACCAGACAATTGAAGGATCAACAGAATTCTCAGAAGAAATACTGCTGTGTCGTATGCGACGCGCGTTTCAAGGGTAGCGGTGGGTTGCGAAATCACTACAAAGTAGTACACGGTGCTGGACCGGTGTTCAAGTGCGACGAGTGCGGCAAGGAGTTTCCACTGAAGGAACGGTTGAAACTGCATGTGCGCACACATACCGGCTTCAAACCGTACAAGTGTCCGGAGTGCGATAAAAGTTTCGCGCGGGGTGGCCAGCTGGTACAGCACCGTCGCACGCACAGCCAGGTCAGACCGTTCCACTGCAAGCTGTGCTCCAACACCTTCACGTGCGCGGCCAATCTGTCATTACACTTGAAACGTCACAACGGCCAGAAGGATCACAAGTGTGACCTGTGCGGACGCGCTTTCGTGCGACGCGACGCCCTGAAGAAACATCTGGAATGCCTGCACCGTGACGTCAAGTCATTCCTCTGCGCTATCTGCAACAAGACCTTTAAGGGCCACCTACCACAACACATGAGGACACATGCGCGCGACCGTCCGCACGGCTGTGCTACGTGCGGCCAACGATTTGCTCAAAAGTCCCAGTTGACCGTGCACCAAAGAACTCATTCTGGCCAGCGGCCATTTCGTTGTCTAGTCTGCTGGCAAGCTTTCGCTCATTCGACCGCTCTGAAGCTGCACACTCGACGTCATACCGGGGAACGGCCGTTTAAGTGTCCCGAATGCAATGCCGGCTTCACTCAACTGCCACATTGGAAGAAGCATATGAAGTGCATACATGGCAGGAGCGATCCATACGGTTGCAAGCGTTGTAAGAGCTTTTTCAGGATTAAAAGCGACCTGGAAAGTCATGAGAAGACTTGTCATCCAGAGATGGAGGTGGAGGATGACGATGGTGGCGTCCCGGTCGGTAAACCGGCTGGCTGCTCCGAGATCGTCGAGAAGAATTCTGTCACTGCGAAATATAAACTGATGACGGTGGAGAAGATGCGGTTGCTATTGGCAGTGCTGTTGAAGAGGATCAGTAAGCAGGAACGGTTGGACGAGCTCGGCTTCGGTAAACGTCTTATCGACGACGTTCTTCAGGATTCCCTGGTGTCTGCTGGCAAAGAACCGGTCACGAGGAGCGGTTTGTCCGAGCTTGAGGCTCTCACTCGAAACTTAGAAATTTTTCTAGAATGGACAGTACCGAAGGAGCATTGGGAGAATTTCCGTAAGATGAAAAAATCGCCCGAAGATATTTTGGAGACGCTCACAGCTACG
Protein Sequence: MISMQQQTILNNVTGPEQPQEEVQLTELLPVKQSRIRENVFKDTDATDALRALRSLSGDCSDGDSFNLREFNFCKNVEQLERRSSKHGSKPRRVEVCRKKTKEIKNNVKNVDFYEEKNSGVAEKKVRNNSKIAHVKAPKRKLTSSSNKKKDDDRESNYGTNEKSIGKNTTEWDEEFEHHCDEEDEDEQLYLDLEKKDCFKDEIYVYRREPLDPRSSLEPEELGAINRKDFCEDYPTTDGELFDGKGTFVEKISDVDNVGKEKFKVDGITEKDIPEKELRLKIDAIIQANYLLERENNNVVGSDESKIKIVEHIGTSSAAAETKKTKRKRTDHEKTRQLKDQQNSQKKYCCVVCDARFKGSGGLRNHYKVVHGAGPVFKCDECGKEFPLKERLKLHVRTHTGFKPYKCPECDKSFARGGQLVQHRRTHSQVRPFHCKLCSNTFTCAANLSLHLKRHNGQKDHKCDLCGRAFVRRDALKKHLECLHRDVKSFLCAICNKTFKGHLPQHMRTHARDRPHGCATCGQRFAQKSQLTVHQRTHSGQRPFRCLVCWQAFAHSTALKLHTRRHTGERPFKCPECNAGFTQLPHWKKHMKCIHGRSDPYGCKRCKSFFRIKSDLESHEKTCHPEMEVEDDDGGVPVGKPAGCSEIVEKNSVTAKYKLMTVEKMRLLLAVLLKRISKQERLDELGFGKRLIDDVLQDSLVSAGKEPVTRSGLSELEALTRNLEIFLEWTVPKEHWENFRKMKKSPEDILETLTAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00126190;
90% Identity: iTF_01477829;
80% Identity: -