Basic Information

Insect: Acromyrmex charruanus
Gene Symbol: -
Assembly: GCA_017607545.1
Location: JAANIC010000093.1:1286435-1291798[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.45 24 4.7 0.3 1 21 352 372 352 375 0.87

2 10 0.0024 0.12 11.9 4.0 1 23 382 404 382 404 0.97

3 10 0.00091 0.047 13.2 5.2 1 20 410 429 410 432 0.95

4 10 0.0012 0.061 12.9 5.4 1 23 438 460 438 460 0.97

5 10 4.5e-05 0.0023 17.3 2.8 1 23 466 488 466 488 0.97

6 10 6e-08 3.1e-06 26.4 0.9 1 23 499 521 499 521 0.98

7 10 1.3e-06 6.6e-05 22.2 2.9 1 23 527 549 527 549 0.98

8 10 8.4e-07 4.3e-05 22.8 0.5 1 23 555 577 555 577 0.97

9 10 1.3e-06 6.8e-05 22.2 0.6 1 23 583 605 583 605 0.95

10 10 9e-07 4.7e-05 22.7 0.3 1 23 611 633 611 633 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.45	24	4.7	0.3	1	21	352	372	352	375	0.87
2	10	0.0024	0.12	11.9	4.0	1	23	382	404	382	404	0.97
3	10	0.00091	0.047	13.2	5.2	1	20	410	429	410	432	0.95
4	10	0.0012	0.061	12.9	5.4	1	23	438	460	438	460	0.97
5	10	4.5e-05	0.0023	17.3	2.8	1	23	466	488	466	488	0.97
6	10	6e-08	3.1e-06	26.4	0.9	1	23	499	521	499	521	0.98
7	10	1.3e-06	6.6e-05	22.2	2.9	1	23	527	549	527	549	0.98
8	10	8.4e-07	4.3e-05	22.8	0.5	1	23	555	577	555	577	0.97
9	10	1.3e-06	6.8e-05	22.2	0.6	1	23	583	605	583	605	0.95
10	10	9e-07	4.7e-05	22.7	0.3	1	23	611	633	611	633	0.98

Sequence Information

Coding Sequence: ATGTCGGAAAGCGCGAATTCGGAGATTGATTCCTACATGTATAAATGTCGCGCATGCATGAAGGATAGCTGCAAAATGTTGTCCATGTATGATGATAACATTAGCGAGATCAACTTGCCGTACAAACTCGCGCAGATCACGTCCATCAAGattGATCAATTTGATGGACTGCCTAACATGCTCTGTCCAAAGTGTGCATATCGAACGAATGCTTTTTATGACTTCAGATTACAAGTGCAAGAATcagataagaaatttaaaatgatgcAAGAAACTAAAACGAACATTGTGAAGacaGAACAGTTAAATgctaagaaagaaaaaaatgatgcaCAGAAAGATGGATTTttggaattaaatatatcaggCGATGTAAAGTCTGATCGTACTTTTgagtttgtaaatattaaaataacaaatgatATGGATCAACAACAATATGAAATTGATGTATCTCAGTTGGTCAAAGATAATGGAGATGATAAAGAGAACTCACAGTTGAatgatgtttattataatattgaaactaATGAGGATCAAATAGGTGCCCAGTTGATGAAAACTGAGTTACCtgaagatatttcaaaaatatttgcagaAAATGTCGCAATTATGTATATACCAAAATCTACGATTGAGTCGATGTCAGTCGAGAACACGTTAACGCTTGATCCGGAACAAGAAGAAATAGTAAATGATAATGGTACATTTATTTCTGAAGTGGAAATCTTGACtgaagaaaatgaagaagCCTCAAGCAAAATATGCGTTTCCAGTCCTGTGGaatctaaaaagaataaatgtacCTATTTAGAACAACAAGAAGTAATATCAGTAATACAAGTtgagaaacaaaaagaatataatgagATGATACAAAACAGAGATAAAGAAACAAAGCTCAATGAGAGTAGTTCTAATATTGAATTCATAGTAGAAAACAACGATGGGTCTGATTCTGACTACTTCGTTGatgataaagataatatattaggCAGTTTGAGCGATGCAATTATACGGATAAAAGAATTCAAACGAGAAAATGGGATCGAATATCAATGCACGTTATGTTTACAGAATTATAGTCAACTGACTAGTGTATTATTGCATACTGTCGAGAATCATGTCCCTTCCAACGGTCCGTTCTTTTGCATGGTGTGCGAAAAGGACTGCAAAAGTCGTCGAGAGCTGCGAACACACGTGAAAACGCACACTGGCGAGTTTCCATATTCCTGCTTCCTTTGTAAAAAGGCATATAACAGAAAGAGATATCTGAAGAGACATATGGCATGTCATCCCAACTTTTCACGGCACCGCTGCCTGAAGTGTGGTTGCCGCTTTAAATCAAAATCAGAATTAGACAGCCATGCGACAACACATGATCTCATCGCACCCTATGCTTGCAGTCAATGTTCGCGTATATTTAATCACAAAGGCAATTACAAACGGCATCTGATCAGCCATTTGGATCCGCAGGGTCTTCATTTGCCTAAATATCCGTGCAATTATTGTGACAAACGTTTTCCTAATAATCGTACACTCCAAACGCATATACGGGTACATACTGGTGAAAAACCGTTCAAGTGTGACGTTTGTCATAAGTCATTCTCACAACGAGGCAATTTATTGAACCATTCAAAGATACATTGGAATCCTCGCAGCTACACATGCGAAGTCTGTGGCAAAAGCTTCAATCAACGTGCTACATTACGAGATCACACATTATTGCACACTGGTGAGAAGCCTCACATATGTAATGTATGTGGAAAAGCATTTACGGTTAGTGCAGCGTTGAGGAGGCATATGTTCAATCACGTTGATGTCAGGCCATTCAATTGTGATAATTGTGGCATGGGTTTCATCGGTAAATACGATTTACGACGACATATGCGAGTGCATGAGAACCGACCTAAGGAAAAGcgtaaaaaaaacacaaaaacaaCCAATGTTCATCAGCAAAAATCGGAGGAAAGTCATGTTACGTTGGAAGAATCGAAAACTGAGACTGCGCTCATAGAAATAGAAGAAGGGCTTTTATCACAAAACATTATACAGACCATACCACAAATCGAATCGGAAAAGGAAAATGAGGATGcactatttaataatcttcaaTCTTATTCAGTTATATACAGTACAACTGAAGATAGATCA
Protein Sequence: MSESANSEIDSYMYKCRACMKDSCKMLSMYDDNISEINLPYKLAQITSIKIDQFDGLPNMLCPKCAYRTNAFYDFRLQVQESDKKFKMMQETKTNIVKTEQLNAKKEKNDAQKDGFLELNISGDVKSDRTFEFVNIKITNDMDQQQYEIDVSQLVKDNGDDKENSQLNDVYYNIETNEDQIGAQLMKTELPEDISKIFAENVAIMYIPKSTIESMSVENTLTLDPEQEEIVNDNGTFISEVEILTEENEEASSKICVSSPVESKKNKCTYLEQQEVISVIQVEKQKEYNEMIQNRDKETKLNESSSNIEFIVENNDGSDSDYFVDDKDNILGSLSDAIIRIKEFKRENGIEYQCTLCLQNYSQLTSVLLHTVENHVPSNGPFFCMVCEKDCKSRRELRTHVKTHTGEFPYSCFLCKKAYNRKRYLKRHMACHPNFSRHRCLKCGCRFKSKSELDSHATTHDLIAPYACSQCSRIFNHKGNYKRHLISHLDPQGLHLPKYPCNYCDKRFPNNRTLQTHIRVHTGEKPFKCDVCHKSFSQRGNLLNHSKIHWNPRSYTCEVCGKSFNQRATLRDHTLLHTGEKPHICNVCGKAFTVSAALRRHMFNHVDVRPFNCDNCGMGFIGKYDLRRHMRVHENRPKEKRKKNTKTTNVHQQKSEESHVTLEESKTETALIEIEEGLLSQNIIQTIPQIESEKENEDALFNNLQSYSVIYSTTEDRS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01477809;
90% Identity: iTF_00015559;
80% Identity: -