Basic Information

Insect: Acromyrmex charruanus
Gene Symbol: -
Assembly: GCA_017607545.1
Location: JAANIC010005836.1:2522880-2524472[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00012 0.0061 16.0 2.2 2 23 25 46 24 46 0.97

2 15 0.00024 0.012 15.1 3.8 2 23 53 75 52 75 0.95

3 15 9e-06 0.00047 19.5 2.0 2 23 155 176 154 176 0.97

4 15 1.4e-05 0.00074 18.9 4.3 1 23 182 204 182 205 0.96

5 15 0.0012 0.06 12.9 0.6 1 20 210 229 210 232 0.94

6 15 1.1e-06 5.9e-05 22.3 0.8 1 23 250 272 250 272 0.98

7 15 5e-07 2.6e-05 23.5 1.2 1 23 278 300 278 300 0.97

8 15 2.2e-06 0.00012 21.4 2.4 1 23 306 328 306 328 0.98

9 15 0.00056 0.029 13.9 0.2 1 23 334 356 334 356 0.99

10 15 1.7e-05 0.0009 18.6 1.1 1 23 362 385 362 385 0.92

11 15 7.9e-06 0.00041 19.7 1.3 1 23 391 413 391 413 0.98

12 15 0.00017 0.009 15.5 4.7 1 23 419 441 419 441 0.98

13 15 2.2e-06 0.00011 21.4 0.4 1 23 447 470 447 470 0.97

14 15 1.6e-06 8.2e-05 21.9 0.9 1 23 476 498 476 498 0.96

15 15 3.8e-07 2e-05 23.8 4.8 1 23 504 526 504 526 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00012	0.0061	16.0	2.2	2	23	25	46	24	46	0.97
2	15	0.00024	0.012	15.1	3.8	2	23	53	75	52	75	0.95
3	15	9e-06	0.00047	19.5	2.0	2	23	155	176	154	176	0.97
4	15	1.4e-05	0.00074	18.9	4.3	1	23	182	204	182	205	0.96
5	15	0.0012	0.06	12.9	0.6	1	20	210	229	210	232	0.94
6	15	1.1e-06	5.9e-05	22.3	0.8	1	23	250	272	250	272	0.98
7	15	5e-07	2.6e-05	23.5	1.2	1	23	278	300	278	300	0.97
8	15	2.2e-06	0.00012	21.4	2.4	1	23	306	328	306	328	0.98
9	15	0.00056	0.029	13.9	0.2	1	23	334	356	334	356	0.99
10	15	1.7e-05	0.0009	18.6	1.1	1	23	362	385	362	385	0.92
11	15	7.9e-06	0.00041	19.7	1.3	1	23	391	413	391	413	0.98
12	15	0.00017	0.009	15.5	4.7	1	23	419	441	419	441	0.98
13	15	2.2e-06	0.00011	21.4	0.4	1	23	447	470	447	470	0.97
14	15	1.6e-06	8.2e-05	21.9	0.9	1	23	476	498	476	498	0.96
15	15	3.8e-07	2e-05	23.8	4.8	1	23	504	526	504	526	0.99

Sequence Information

Coding Sequence: ATGGATTCAACATCTACAGATAAAATAGTCGTGAAGAATGAATCAAAAGACAACGAAGATACTCAATCCCTCAAATGCGAGTACTGTCAAAagcaatatatgaaaataggGCATTTGAAAAATCACATAAGAATTCACAAAACGAAACAGGTTCTCCATTGTAAGCTGTGCAATAAAACGTTTAGCGTTCTGAGATTGTTCGAGAAGCATATGAAGCAATCACATGGAAAAGATAAAGTTgatgaagaaagagagataccAGTcagaaaaacaagaaatattgcTAATACAAGATCTATGATTCAACTAACACAAGAAACATCCGATCTCAAAATGATGAATGAAAATTGTGATTTGTCGCTTGACACGAGAGAATCCTTTGACAAAGACAATAAGAGCTCCAACCAAACTGGGAGACGGAAATTGTCCGCAGAGAATCGTGTATCAAAGACACAACCTCTAAAGTGTACATTTTGTAAGCAAAAATTCAGTTTTCCGAGCGTGCTAGAAAGACATATGCGATCGCACACAAATGAACGACCGTACGAATGCGAAGTATGtaaaaagagttttaagcAACTGGGTCATCTCAGTCAACACTCACTGACCCATCATGACTATCGTTCATTCCAATGCACAGTATGTAGCATAAAGTTCGACTCGCTGGATTTACTGAAGCAACATACACCCTCGCATAAAGGCGACGCCACAACGACGACATCAAAGGTACGCGACGTCTATCGTCTGTTTGAGTGTGATATCTGCAAAAAGGTATTCACAATGAAGAGCGTGCTAGAGCGACACATATTCACGCACACGCAAGAACGTCATTATGACTGTAAGGTATGCGGCAAGCGATTCAAGCAAGCTGGTCATGTCAAGTCACACATGTTGGTGCACACTGGCGAGCGTCGTTTTCAGTGCACCATATGTTCAAAACGTTTCAGTCTGTCAAACTCATTGAAGAAACACATGTATGTGCACAATGGTGAAAAGCCATATCAGTGTGATGTTTGCGGTGCACGTTTCCTTGAGAAGCGCAACCTTAACGGCCACTTGCTGACGCATACCAACGAGCGTCCGTACTGCTGCAAGATCTGCGGTAAACGGTACACTCTGGCGGATACTTTGCGCCGTCATGTCAGTGCCGCGCATGAAGATGGTCGTACATATCAGTGTGAGATTTGTGCCAAGATGTTCAAGCAATTGGCACATCTGTCGGTGCACAAAAAAGTACATAACGACGAACGACCGTTTCAATGTCATTTATGCGAAAAGAACTTCAAGCATAAGAATGTACTCAAGTCGCACCTGGCGATCCACGCGAATGTACGACCATTCGAGTGTGACGTGTGCAAGGCGACATTTGTTAGGAAGACAAATCTGCAAACGCATATCTCGTCAGCGCACATGAATGAACGTCCATATACCTGCACCATCTGCGGCAAGCGCTTCAAGCAGATTAGTCATCTAAACGGTCACGTAGTAGTGCATAGCAATTTGATGCCTTACAAGTGCGATTACTGCGATCGTCGGTGCAATCGACtagataatttgaaaaagcATATGCGCCTCCATACgaaaaataaggaa
Protein Sequence: MDSTSTDKIVVKNESKDNEDTQSLKCEYCQKQYMKIGHLKNHIRIHKTKQVLHCKLCNKTFSVLRLFEKHMKQSHGKDKVDEEREIPVRKTRNIANTRSMIQLTQETSDLKMMNENCDLSLDTRESFDKDNKSSNQTGRRKLSAENRVSKTQPLKCTFCKQKFSFPSVLERHMRSHTNERPYECEVCKKSFKQLGHLSQHSLTHHDYRSFQCTVCSIKFDSLDLLKQHTPSHKGDATTTTSKVRDVYRLFECDICKKVFTMKSVLERHIFTHTQERHYDCKVCGKRFKQAGHVKSHMLVHTGERRFQCTICSKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLEKRNLNGHLLTHTNERPYCCKICGKRYTLADTLRRHVSAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHISSAHMNERPYTCTICGKRFKQISHLNGHVVVHSNLMPYKCDYCDRRCNRLDNLKKHMRLHTKNKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01261966;
90% Identity: iTF_01261966;
80% Identity: -