Aorb003831.1
Basic Information
- Insect
- Acrocera orbiculus
- Gene Symbol
- -
- Assembly
- GCA_947359355.1
- Location
- OX375757.1:53169413-53173049[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.18 14 6.2 7.0 1 23 121 144 121 144 0.98 2 11 0.059 4.6 7.8 0.1 3 23 158 179 157 179 0.95 3 11 0.11 8.6 6.9 3.0 2 21 677 697 676 699 0.93 4 11 0.73 57 4.3 0.4 2 20 708 730 707 734 0.92 5 11 1.7 1.3e+02 3.2 0.2 1 17 741 757 741 764 0.82 6 11 0.00011 0.0086 16.4 6.4 1 23 770 792 770 792 0.99 7 11 7.3e-06 0.00057 20.1 0.6 2 23 801 823 800 823 0.97 8 11 0.00016 0.012 15.9 2.6 1 23 830 852 830 852 0.95 9 11 0.21 16 6.0 1.9 1 23 858 880 858 880 0.97 10 11 0.018 1.4 9.4 7.0 1 23 886 909 886 909 0.97 11 11 3 2.3e+02 2.4 0.8 2 23 919 940 918 940 0.90
Sequence Information
- Coding Sequence
- ATGGACAGTTTCAATTATAACTGTCTAGGAGGAGATTATAGTAGTAATAATCAGAATTTGGAACAATCATCAATACAAACAGGCTATTACAATCAATTTGAAAATGAATGTTACCAATCACAAGAACAAAATAATTGGGCGTCACAAAATGTTTTTGTTTCTATTCCAATAAATCCTACACAGAATGGTTACAAACAGCTACAAATCCGACAATCAGAAATCAAATATGAGCCAATTAAATTTGAACAGAGTTCAGAAACTGGTAGTCTTATATCAAATACAAATTCTCCACAAAAGTTGACAACAAATGCTACATCTAAAACTAATTTAATAACAGCTCGTCCTAAAGCAGTTGTTTGTTATAAATGTAAAATATGTCCATTTATAACTATATCATGTAATTGCTTAAATTCTCATATTAAAAGCTGCCATCCAGATGGTGTAGTTTTTGATGTGCCAAAAAAAATTTTATGTCCCGGCTGTGAAAATATCTTTTTTAAAAAGCAATCACTCGAGATACACTTGGAAAATGATCATCAAATGAAAAAATATGAAATTAAATTGCTTTTAGAAGCTACTATTAAGGATCAGTCATCTTCTATAGCATGCAATGAAAGTAGTAATAAGGTTCAAATTGACAATATTGACTTCCTTCCTAAAACAACATGTGATAATACTGTTGAAAATATTCAAATTATATCTGACTCTGATAGCTCTAATAATATTTCAGATGGAAGAAAAAGTAATGATTATACCGTATTATATCAAAATAATAATTTAAAAGAGATGACATTTAACGAAACTAGTAATTTAAATTTGGATAATGATCTCTTCATGCCTGCCATAGATCAGGATAAAAATAAAATTTTTATTGAAAATGTTGATACTCCAATTGAGCCTAGCATTGCTGATAATATTAGTATAGTTAATAATTTCAGCAATTTACTTGAAAAAGAAGAAGATACAAATAAGGTTTTCTATGATATGGATAGTGGTACAATGAATAGCTCTCAAACTGAAGGAAATAATCCATTTCCATATGCTTCATTTAATTCTGAAAAACCTACAAGACCAAAAATTTATATAAAAAATGTTGATATCCTTAAAGAACCGATTTTTGTTACATCGCAAGCAGCTAGAACACTTAACTTTAATGATGATCTGAGTAATTTATTATCACCAAATTTAGATTCACCATTGAGAAATTTTGAAAATATAAATCATTCACGTGAAAATGAAATAAAAAAATCTGAAGGTAAAATATATATAAAAAATGTGGATATCATAAATCAGCCAAACTATCATAAAAAAACTACAAATTCATTACATTTACGAACAGTCGATGAATTAAATTTAATGAATATGAATGAAGTACAGGATTTAATTGCTCCAATCTTAGCACAAGATCAATGTGATTCAAATAGAATAAATAAATTGTCAGAAAATTTAAAAAACTCAGATAATTCTTGTTGTATACTTCCTGATATGAGTGATAATGCTAACATTTTATTTGAAAATAATAATTCTAATAATATTGAACCTTGGTCAAATAATTGCAATCTTAATGAATTGAAGAATAATAAAATAGATTCAGAGACATCAAATACAGAAAATAAAAATTTTAATTTACTTAAAGAATTAGATTTTGATTTAAATACACCTCAAAGATTTTTAAATGAAGAAATTGAAGATGATCTACTAAATTGTGCCGAAGAACTTATGAATGATGATCGTTATGGATTAGAAAATTATCCATTTCTAATGTCACAAAGAAGTTATAGTAGTTTTCAAATAGAAAATTTTGATTTTCGTGAAAATGAAAATGAAACCTTACAACATTTTAAAGTAGATTCAGCTATTCCAGAAAAAGGAAGAATATATATTGCTGCTAATTTAATGGAAAATAAATCTGAAAAAAATGAAATGATAAAAAAGAAAACTAGAGGAAGGCCACCAGGTGCTAGGCAGACAGGAATAACAAAATTAAAAAAGAATGGCTTAGTTGTTAATGTTGATGAAATTGGTAAAAAATGTGATTTAGATTGTGGAATGAGATTTCGAGATATAGAAAAATTACAATATCACAAAAAATGTCATATAAGTTCTAATCTTCGCCGAATGCAATGTCCAGAATGCAAATCTCAAGAATCTCAAGAATTCAAATCATGGAATGCACTACATGCACACCTTTGGCGATCACATAATATCGATATGGAATTATTTAGCTGTGATATTTGTGATTTTAGAACTCCAGTATTATCATACCTTAATAATATCCATAGAAAAATTCATTTTGATGATAGAAATTATAAATGTAATGAATGTAATAATAGTTATAAAAATAAAAATCAACTTTTCCATCATCGTCGTTCACATCGACCAACTGTTGAACATATTCAAAAATGTTCAGAATGTGGAGCGACATTTACAACTATAAGAGCATTAAAACGACATATAAAAAAAATTCATGAAAAATCAAAAGGAAATTTTAAATGTGAAATATGTCAAAAAGATTTTTATACAAAATTTGATTTGAAACAGCACAATTTAAATCATAATCCTTTACATAAATTTATATGTGATAAATGTGAATATCGTTCAAATGACTACAATGTTTATCGACGGCATAAATTAACACATGACAGAAATAAAATGTATACATGTAAATTTTGTGGTTATCAATGTATTCAAAGTCATTTATATCAGAAACATCTTTTACGAAAACATCCTAAAAATGCATATGAAGTAATTTTAAAATGCACATATTGTACTTTTGCAACAATTAATCAAATCAAGTATAATTTCCATATAGCACGACATCAAAATGAATTAAATACAAATGAAAATTTACAAATTAATGAAAATATTAGTGTTCAGAAAAAATCTAAAGATAGTTTTACTGAAAATAACGCACAACAAAACTCTAATCAAAATAAAATAAAAGTTAAAAGCAATTTAGTTTTAACAGATCCTAACAAATTTTATTCATCTAGTCCTATTTTATTTGATAACCTTGAGAATGGAATCACATAA
- Protein Sequence
- MDSFNYNCLGGDYSSNNQNLEQSSIQTGYYNQFENECYQSQEQNNWASQNVFVSIPINPTQNGYKQLQIRQSEIKYEPIKFEQSSETGSLISNTNSPQKLTTNATSKTNLITARPKAVVCYKCKICPFITISCNCLNSHIKSCHPDGVVFDVPKKILCPGCENIFFKKQSLEIHLENDHQMKKYEIKLLLEATIKDQSSSIACNESSNKVQIDNIDFLPKTTCDNTVENIQIISDSDSSNNISDGRKSNDYTVLYQNNNLKEMTFNETSNLNLDNDLFMPAIDQDKNKIFIENVDTPIEPSIADNISIVNNFSNLLEKEEDTNKVFYDMDSGTMNSSQTEGNNPFPYASFNSEKPTRPKIYIKNVDILKEPIFVTSQAARTLNFNDDLSNLLSPNLDSPLRNFENINHSRENEIKKSEGKIYIKNVDIINQPNYHKKTTNSLHLRTVDELNLMNMNEVQDLIAPILAQDQCDSNRINKLSENLKNSDNSCCILPDMSDNANILFENNNSNNIEPWSNNCNLNELKNNKIDSETSNTENKNFNLLKELDFDLNTPQRFLNEEIEDDLLNCAEELMNDDRYGLENYPFLMSQRSYSSFQIENFDFRENENETLQHFKVDSAIPEKGRIYIAANLMENKSEKNEMIKKKTRGRPPGARQTGITKLKKNGLVVNVDEIGKKCDLDCGMRFRDIEKLQYHKKCHISSNLRRMQCPECKSQESQEFKSWNALHAHLWRSHNIDMELFSCDICDFRTPVLSYLNNIHRKIHFDDRNYKCNECNNSYKNKNQLFHHRRSHRPTVEHIQKCSECGATFTTIRALKRHIKKIHEKSKGNFKCEICQKDFYTKFDLKQHNLNHNPLHKFICDKCEYRSNDYNVYRRHKLTHDRNKMYTCKFCGYQCIQSHLYQKHLLRKHPKNAYEVILKCTYCTFATINQIKYNFHIARHQNELNTNENLQINENISVQKKSKDSFTENNAQQNSNQNKIKVKSNLVLTDPNKFYSSSPILFDNLENGIT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -