Basic Information

Insect: Acrocera orbiculus
Gene Symbol: prdm10
Assembly: GCA_947359355.1
Location: OX375758.1:29593042-29596780[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.001 0.08 13.3 0.4 2 23 499 520 498 520 0.96

2 11 5.9e-05 0.0046 17.2 0.8 2 23 555 576 554 576 0.97

3 11 0.0098 0.77 10.2 6.1 1 23 598 620 598 620 0.99

4 11 0.00013 0.011 16.1 0.5 1 23 628 650 628 650 0.99

5 11 0.71 56 4.4 1.9 1 23 655 677 655 677 0.94

6 11 0.058 4.6 7.8 5.0 1 23 683 706 683 706 0.95

7 11 0.0021 0.16 12.3 1.1 1 23 711 733 711 733 0.97

8 11 6.4e-06 0.00051 20.2 1.4 1 23 739 762 739 762 0.94

9 11 0.0016 0.12 12.7 0.6 1 23 812 835 812 835 0.96

10 11 0.00088 0.069 13.5 2.2 1 23 857 880 857 880 0.97

11 11 0.085 6.7 7.3 2.0 2 23 912 934 911 934 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.001	0.08	13.3	0.4	2	23	499	520	498	520	0.96
2	11	5.9e-05	0.0046	17.2	0.8	2	23	555	576	554	576	0.97
3	11	0.0098	0.77	10.2	6.1	1	23	598	620	598	620	0.99
4	11	0.00013	0.011	16.1	0.5	1	23	628	650	628	650	0.99
5	11	0.71	56	4.4	1.9	1	23	655	677	655	677	0.94
6	11	0.058	4.6	7.8	5.0	1	23	683	706	683	706	0.95
7	11	0.0021	0.16	12.3	1.1	1	23	711	733	711	733	0.97
8	11	6.4e-06	0.00051	20.2	1.4	1	23	739	762	739	762	0.94
9	11	0.0016	0.12	12.7	0.6	1	23	812	835	812	835	0.96
10	11	0.00088	0.069	13.5	2.2	1	23	857	880	857	880	0.97
11	11	0.085	6.7	7.3	2.0	2	23	912	934	911	934	0.96

Sequence Information

Coding Sequence: ATGGAGTCACAAGCAAATGAGAGAATTAAGTCTGATATTAAAAATGAACAAGACTATTACTATGGATATCAAAGAGCTAGTGCCTATGACCCTAATATGTGCTCAGCAGCCCAATATTCACCACCATATACAAACCATAATGAAAATTATGAAAATATTATATTGGTTCCATGTAATAATTCTAATTCATCGGAAAATTTATCAAATGATCAGACAGCAAATAATAAGAGACCATTTGTTAATTATCAGAGACAACACTTCACACAAAATTGTTCACAAACCTATGTATCAGAACAACATACAACATTTCATAGTTTTCCAAATGATTCCGGTCGAAATGAAGCAACCTATATAACTAATTCTACAACTAATGTAAGACAAACTAATGAAAATACAGAAGCTCAACTTATATTACATCGCTCTCCAAATGGCCATTTGTATCAAGATTTTTATATACATATTGGGAATGATGTTAATAATTACCAGCAACCTTATTCAAATAATAATATAGTACAAGAAATTCAATCACAAGATTACAATTATACGACCAAAATGAATACCGATAGTGTTTTAATAGATGGACATTTAACAGATTCCAATTTTAGTCATATTGAACCTTCTATGATAAATAACACACCACAAGAAAATTATTTAACGGATTCATATCAATCATTACAAAATCATCAACAAAATGTACTTTTGCATAAAGATCAACAAAGAATATTGTTGGAAAGTACAATGTCACCATTATTGGCTGCTGTTAGTAATATAACACAAAAGGACGCAGAATTACAATCTTATTTTGATCAAAATTTTGAGAAGGACGGTGGTATGAATCTTTTAGCTGATTCTATCGAGAATCATAAAACTGCCGGTAAAACATTTTTTGTAAAGCAAGGAAATGATTTTGTAGATTTAAACTATGCAAATTTGTCTGAAAATCCCAAAAATGTTGCAGAAATTTTATCACAAGGCTCCGTTGAAGACGATGAGTACTTATTAGTGTCTGATAAACCAGTGGAGGTACGAGCACGAGCAAGTTTACCAACAAAATATCTTTGTTTCGGCAGAACTGCAAATGAATTCAAGGAGCTCACCATTTATGCTAAAAAATCTATTCCAACAAAAACAAAGTTTGGCCCTATTGAAGGTGAATTAAAGTACACAACTGATGTTTTTATAGATGTACTTAAAATTGAAGAATTTAGAATATATCCAATTTTATTAATTGGTAACAATGGCATTTTGGAAACAGAAAATGAAAACAGTTCTAACTGGATGCGTTATGTACGCCTGGCAAACAAATATTCTGAACAAAATTTACTTATTTATGAAGAAAATGGAAAATTATATTTTAAATGTAGTAAAATAATTAAACCAAAAGACGAACTAAGAGTGGGTTATAGTAAAGAATATGCTATTTATCATAATCTTAAAATACTTGAGCCAACAGACGTAGAAATTCAAAATCTATATGAACAGGATAATCCTTGGGAATGTTTTGAATGTAATCAAAAATTTTCAATATCTGATGATTTGCAAAGTCATTTTAATGTACACGATGCATCAGATGAAATAAGTAAGGAAAACAAAAAGAAACGAAAAGTTAAGCGTAAAAATAAAAACGTTAAAATACTAACAGATATTCGTAAAAATTCGATTCGATGCCTTTATTGCTTTAAAGTTTTTATGACTAATATTAGCCTTAAAAAGCATATGGCCATGCACACAAATAGAAATAGGACAGAAAAATCTTTCAGAAAATATAAAGGAGAAAATAGTGTAAAATTTTTTAAATGCAGTTTTTGTCTAAAGCACTTTCATACTGAAGATAAGCTAATGGTACATCAATTAACGCATGCTAAAAGTGATATTAAGTTTTATAAATGCCCTCAATGTAATCGGCAATGTTCAACACCAGCAGCAATTTCTGCTCATATAAAAAGTCATACAAATCGTTCTTACAGCTGTATTTATTGTTCAGAGCTTTTTAGACATGTTCTAGATTTAAAAAAACATGTTACTTCTCATGCTGTTGATGGGATACACATATGTGTAATTTGTAATAAGAAATATCAGGAATATCATTTATTAAGAAAACACACTAGATTGTTTCATCAGACTGCTAAATTTTCCTGTAATGAATGTGGAAGTCTATTTCCTAATATGAGTTTTTTAAAAAGACATAAAATTAAACACTCTGATAATTTTGACTTTCTGTGTGCTCAATGTGGTAAACAATTTAAACGAAAAGATAAACTACGTGATCATATCAAACGTATTCATAGTGAAACCAAAAAAATTTATGGAAAAATACGGTCAGAGAAAAATTTATTTAAAATAAAAAGCAATAGCCCGATTTTAGAGAATGAAAAATTATTAATTTCTAATTCAGAAATAAATCATTCAACAGAAAAATATACAAATTTCCAATTCAAATGTGATGATTGTATGTTAGGTTTTAAAAGACGTGGTATGCTTGTTAATCATATGGTTAAACGTCATCCAGATATTAATTTGGAAACTGTACCACAGCTTAATATCCCAATACTTAAACCACAAACATTATTTTACTGTCAATATTGTACTAAAGTTTATAAAAGCAATGCAAAAAGGAAAGCACATATCCTTAAGAATCACCCTGGATATGAGTTACCACCTTCTGCTAAAAATAATCATGAATTAAAAAAAAATAATACACAAATTATTGGTAGCTTAAAATCTGAACCACAAAGTTGTCAGTTTTGTTATAAACAATATGTTTCACGAAATCGTTTACTTTATCATCAAAGGAAAGTACACCCAAATATGAATAATGACAATATCCAGGAATCACGGTTATATGCATACAATAAACAAAAAATATATCAACCACCTAGTTCACCAGAAAATAAACTACTGAAATTGTCATCAGCTGCATTAGAATTATCATCAATTGAAGACAGGAAATTTTTTGATTTTCTTAATGAAAGATCTGAAAATTTATTACAGGATCGAAATTCAATTGAATCCCAAGGTCCTCAAGCTAATATCCAATTTGAAGATAATGGAAATAGTTTTCCAAAGGTTGATATAAACTTTAAAGTTGTGGACGAAGAGTTCCCCGGTAGTTCTTCAGCAGGAGAACTTAATCGACTTCCGCAACTTTTTGAGGAATCAATGACTTGTATATAA
Protein Sequence: MESQANERIKSDIKNEQDYYYGYQRASAYDPNMCSAAQYSPPYTNHNENYENIILVPCNNSNSSENLSNDQTANNKRPFVNYQRQHFTQNCSQTYVSEQHTTFHSFPNDSGRNEATYITNSTTNVRQTNENTEAQLILHRSPNGHLYQDFYIHIGNDVNNYQQPYSNNNIVQEIQSQDYNYTTKMNTDSVLIDGHLTDSNFSHIEPSMINNTPQENYLTDSYQSLQNHQQNVLLHKDQQRILLESTMSPLLAAVSNITQKDAELQSYFDQNFEKDGGMNLLADSIENHKTAGKTFFVKQGNDFVDLNYANLSENPKNVAEILSQGSVEDDEYLLVSDKPVEVRARASLPTKYLCFGRTANEFKELTIYAKKSIPTKTKFGPIEGELKYTTDVFIDVLKIEEFRIYPILLIGNNGILETENENSSNWMRYVRLANKYSEQNLLIYEENGKLYFKCSKIIKPKDELRVGYSKEYAIYHNLKILEPTDVEIQNLYEQDNPWECFECNQKFSISDDLQSHFNVHDASDEISKENKKKRKVKRKNKNVKILTDIRKNSIRCLYCFKVFMTNISLKKHMAMHTNRNRTEKSFRKYKGENSVKFFKCSFCLKHFHTEDKLMVHQLTHAKSDIKFYKCPQCNRQCSTPAAISAHIKSHTNRSYSCIYCSELFRHVLDLKKHVTSHAVDGIHICVICNKKYQEYHLLRKHTRLFHQTAKFSCNECGSLFPNMSFLKRHKIKHSDNFDFLCAQCGKQFKRKDKLRDHIKRIHSETKKIYGKIRSEKNLFKIKSNSPILENEKLLISNSEINHSTEKYTNFQFKCDDCMLGFKRRGMLVNHMVKRHPDINLETVPQLNIPILKPQTLFYCQYCTKVYKSNAKRKAHILKNHPGYELPPSAKNNHELKKNNTQIIGSLKSEPQSCQFCYKQYVSRNRLLYHQRKVHPNMNNDNIQESRLYAYNKQKIYQPPSSPENKLLKLSSAALELSSIEDRKFFDFLNERSENLLQDRNSIESQGPQANIQFEDNGNSFPKVDINFKVVDEEFPGSSSAGELNRLPQLFEESMTCI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -