Aorb005099.1
Basic Information
- Insect
- Acrocera orbiculus
- Gene Symbol
- -
- Assembly
- GCA_947359355.1
- Location
- OX375756.1:7878090-7881993[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.35 28 5.3 2.2 2 19 273 290 272 293 0.93 2 16 0.31 24 5.5 2.1 2 23 304 325 303 325 0.90 3 16 0.0058 0.45 11.0 1.2 3 23 335 356 333 356 0.93 4 16 0.00036 0.029 14.7 0.1 5 23 366 384 362 384 0.92 5 16 0.041 3.2 8.3 7.2 1 21 390 410 390 413 0.90 6 16 5.6e-06 0.00044 20.4 0.1 2 23 419 440 418 440 0.97 7 16 0.0092 0.72 10.3 3.7 1 23 498 520 498 520 0.96 8 16 0.01 0.78 10.2 1.7 1 23 525 547 525 547 0.98 9 16 0.0076 0.6 10.6 1.9 1 23 563 588 563 588 0.96 10 16 2.8e-05 0.0022 18.2 0.6 2 23 595 617 594 617 0.95 11 16 0.0009 0.07 13.5 0.5 2 23 623 645 623 645 0.96 12 16 2.6e-06 0.0002 21.5 0.1 2 23 651 673 650 673 0.97 13 16 0.00011 0.0083 16.4 2.5 2 23 677 699 677 699 0.97 14 16 0.34 27 5.4 3.3 1 19 705 723 705 728 0.87 15 16 2.9e-05 0.0023 18.2 1.5 1 23 734 756 734 756 0.99 16 16 4.2e-06 0.00033 20.8 3.7 1 23 762 784 762 784 0.99
Sequence Information
- Coding Sequence
- ATGTCAAAATCATCGGATTGTGATAAATCTGATGGTTGTTGTCTACTTTGCTTTAAGGAGTTGGAACATCCTTATTTTAACATATTTAATGACAATGATGGCATTCCTGATATAAAACATCTTCTACTGACTTGTTTGTTTGTAGAAGTTAAGGAAAATCCAAACAAAATACAGGCTATTTGCGATGAATGCTTTAATAAACTAATCGAAAATTATGATAATATGCAAATTGGAAAAAATAAAACACCAACAATTTCTAAAGATGTCCCTTCAGATTCAGTAGAAGAAAAATCAACTTTTGAAGTGAAGTATTTGCAATGTGATGACAAAGAAAAATACATCAATGCGTCAGGCGTAAAAATGGAGACTGAAGAAGAAAATCCACTAGAAATAGACCAGTATACTGGTGTTCAGGAAAATGAAGAACTGGAACAAAATACTGAGGAGAGTCAGAGCTCTTATAATGAAAAATCTGAATATGATGATATAGATTTTTTAGATGATTCATCTGAAATATTTGAAAAAATAAATGCCGATATTAAACGCGATTTTGATTTGCAAAAATATAAAAAGGAATTGATTACCTGCGATTTTAGAGATATTATTTTCCCGGAAAAAATAGCATGCTCTATTTGTTTAACTGAAATGGACAGTCATTTAAATGTCGTTGAGCATATAAAAAATGAACACTATGCAAAAGATTTGGGATTTCCATGTGTTATCGATTCTAATTGTCCGATATCTATTGGTGTTGATGAGCTATCTTTTCATTTAGTCTTTACACACTATGAGTTAGACAAATTGAACATTTATACACAATGTCCTGGTTGTATGAAACGTTTCTCTAAGTTTCCAGATTATAATAAACATTCATGTTATACGTCCATGAGTATTTCGAGAGGTTTAACTGAATGTGAAATATGTCAAGCTACTTTTAAATCCAATAAAAGATATCGATTTCACCAACAATTTCATTTGATAAAAGATCATCGTCCAAAATGCTGCTTTATTTGTGACACCTATTTCGACGATGAAAATGAACTATTTGAACACTTAAGATATGGTCATGAAAAAAATCTTGGATTAATTTGCATTGAATGTGATAAAGAATTCATTTCAAAGGCTAATTTAGAAGAACATAAACGTCTTCATAATGTGAGAAGGACATTCAAATGCAAACATTGCCCAAAATCATATCTTTCTAATCAACATCTGAAGCATCATTTTGCTGCATATCATACAGATAAAAAATTAGAATGTAACATTTGTGGAAAAGTGCTAGCTAAGCCCACAATGCTTAACAAACATATGATGTCACATATAAAGTTGAAAGCAACAGAAGTTCTTGTCTGCAATATTTGTGGCTTTATTGCAGCTAATGAAGACGAAGGCCATGATCATTCTGCTTCGCATAGTTTAACATTAAGCAATGAAGATATTAATTCTGAATTGAATATAAAAATAATGGAACTTCAACTCTTGGAAAAATGCTTTTGTTGCGAATATTGTGAAAAACCATTCTTTTCAGTAAAAACATTAAATGATCATCGATATAGTCACACTGAAAAGGAGTTCAAATGTAATATTTGTCCACTTAAATATGACGAGTATAAACGTTTAAAAACTCACAAAATTACTCATAGTGATTATGTGGATATACGAAAAACATTTCCTATTAATCGTTACTATGTTTGTGATAAGGATGATTGTGAGGCTCATTATGTACAATGGACAAGTTTGAGGTCGCATGTTAGACATAAACATCTATTGCATGCTGACGTATCCTGCAAAATATGCGACACAAAATTTTCTAACAGATCGGATTATGAAGACCATTTGTCGAAAGAACATGATTTTTCTGCAAATACATGTCCGTTTTGTTCGAAAAGCTTTACTAAAAAAATGGCAGTTGCAGTACATATTTCCCGAATGCATATTTCTAAACAAACAAAATGTGAAGAATGTGATGAAGCATTTAATAATCCATATGCTTTAAAAGTGCACATGGATACAATTCATCGTCAGCCAAAATGTAAAATTTGTGGGAAAGAGGTGAAAAATTATAAAAACTTACAACTTCATCATAAAATGGTGCATGAGAAATCATTTCGATTTTTTTGTAAATATTGTCAAAAGGGATTTTTCAATAATTGCGATAAAGAACAACATGAAGGAGCTGTCCACGAAAAACTAAACAGATATAAATGTAATATTTGTGACTTTAAGGCTGATTATAAAACATCTCTACGAATTCACATGAGGACACATAACGGTGGAAGTGCATATAAATGCCATTTATGTAATAAAGAATTTGATCGAGCATATTACCTTAATATGCATATTAAACGGCATGAAGGCAAAAGAGAGTAA
- Protein Sequence
- MSKSSDCDKSDGCCLLCFKELEHPYFNIFNDNDGIPDIKHLLLTCLFVEVKENPNKIQAICDECFNKLIENYDNMQIGKNKTPTISKDVPSDSVEEKSTFEVKYLQCDDKEKYINASGVKMETEEENPLEIDQYTGVQENEELEQNTEESQSSYNEKSEYDDIDFLDDSSEIFEKINADIKRDFDLQKYKKELITCDFRDIIFPEKIACSICLTEMDSHLNVVEHIKNEHYAKDLGFPCVIDSNCPISIGVDELSFHLVFTHYELDKLNIYTQCPGCMKRFSKFPDYNKHSCYTSMSISRGLTECEICQATFKSNKRYRFHQQFHLIKDHRPKCCFICDTYFDDENELFEHLRYGHEKNLGLICIECDKEFISKANLEEHKRLHNVRRTFKCKHCPKSYLSNQHLKHHFAAYHTDKKLECNICGKVLAKPTMLNKHMMSHIKLKATEVLVCNICGFIAANEDEGHDHSASHSLTLSNEDINSELNIKIMELQLLEKCFCCEYCEKPFFSVKTLNDHRYSHTEKEFKCNICPLKYDEYKRLKTHKITHSDYVDIRKTFPINRYYVCDKDDCEAHYVQWTSLRSHVRHKHLLHADVSCKICDTKFSNRSDYEDHLSKEHDFSANTCPFCSKSFTKKMAVAVHISRMHISKQTKCEECDEAFNNPYALKVHMDTIHRQPKCKICGKEVKNYKNLQLHHKMVHEKSFRFFCKYCQKGFFNNCDKEQHEGAVHEKLNRYKCNICDFKADYKTSLRIHMRTHNGGSAYKCHLCNKEFDRAYYLNMHIKRHEGKRE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -