Basic Information

Insect: Acrocera orbiculus
Gene Symbol: -
Assembly: GCA_947359355.1
Location: OX375758.1:3341229-3344051[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0018 0.14 12.5 0.5 1 22 297 318 297 320 0.87

2 12 0.00067 0.052 13.9 4.4 1 23 327 349 327 349 0.98

3 12 5.7e-05 0.0045 17.3 2.5 1 23 356 378 356 378 0.99

4 12 7.7e-07 6e-05 23.1 3.8 1 23 384 406 384 406 0.99

5 12 5.2e-06 0.00041 20.5 1.0 1 23 413 435 413 435 0.99

6 12 1.8e-05 0.0014 18.8 2.3 1 23 441 463 441 463 0.96

7 12 3.8e-05 0.003 17.8 0.2 1 23 469 491 469 491 0.98

8 12 3.5e-06 0.00027 21.1 0.5 1 23 497 520 497 520 0.96

9 12 6.6e-06 0.00052 20.2 2.1 1 23 526 549 526 549 0.97

10 12 5e-06 0.00039 20.6 2.2 1 23 555 577 555 577 0.99

11 12 1.5e-05 0.0012 19.1 0.5 1 23 583 605 583 605 0.97

12 12 0.0007 0.055 13.8 0.5 1 22 611 632 611 635 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0018	0.14	12.5	0.5	1	22	297	318	297	320	0.87
2	12	0.00067	0.052	13.9	4.4	1	23	327	349	327	349	0.98
3	12	5.7e-05	0.0045	17.3	2.5	1	23	356	378	356	378	0.99
4	12	7.7e-07	6e-05	23.1	3.8	1	23	384	406	384	406	0.99
5	12	5.2e-06	0.00041	20.5	1.0	1	23	413	435	413	435	0.99
6	12	1.8e-05	0.0014	18.8	2.3	1	23	441	463	441	463	0.96
7	12	3.8e-05	0.003	17.8	0.2	1	23	469	491	469	491	0.98
8	12	3.5e-06	0.00027	21.1	0.5	1	23	497	520	497	520	0.96
9	12	6.6e-06	0.00052	20.2	2.1	1	23	526	549	526	549	0.97
10	12	5e-06	0.00039	20.6	2.2	1	23	555	577	555	577	0.99
11	12	1.5e-05	0.0012	19.1	0.5	1	23	583	605	583	605	0.97
12	12	0.0007	0.055	13.8	0.5	1	22	611	632	611	635	0.92

Sequence Information

Coding Sequence: ATGAGCGTAAATTCAGCTACAGCAAATGGTTCTCAACTTAAGATCTGTTTTTTATGTTATCAACCAGTTTTAGAAGATTATGCAAACATTTTTGAAGAAAATATTCAATGTTTAAATGGAGAATGCCCAATTTCAGATGTACTGTCTAAACTATTGTCCCAGGAATTGGATGAGTCAGAGGTTCATTCAAAGATAATTTGTTTAAGCTGTACTCAAAATATTCAAGAGTACGAAGAATCGCAGCAACTTTTATTGCAAAAAAAATCAAAAATACTTGGTAATTTTAATAAAACATTAATTAATCAGGAAGATTTTGTAGTAGGATTAGGTGTAGGAGATCAAAATGATGAGGCTTTTGTTGATGACGAAACTGCTATAGATGATGATTTTGATAATGAAAATGTGCAAGAAATTGAAATTAATGAAGCTACAATGCTTAGTAATCATGAAAATATGAAATTACCTGAAATTATAACAGAAAATGAAACTGATTGTGAAAATAAATGCAAAGATGGAAGCATAATAGGCACAGTCAATGTTAATGAAGAATATTTTACTGAAAATAGTGAAAGTATGATAGAAATTATAGCAGAAAATGACAAGCCGTTTGACCATTTATCTAACGATCAGGAAGAAATTTATGTTGCAGAAATAACAGAAGTTAAATACGATGAAGATCTTATAGAAAATAGTGAGGCTGGAAATGATGTTGAGAACTTCACTAATTTGGTACAAGAGAGCAAAAAGGAATTAATTAGTAAACCTGCATACTGTATGAATAAGCAAAATTTCAATTGCTTATTATGTCCAGATACGATAGCTGAAAAAATTGAATTTGATGCTAATGGCATTTCTGCGCATCTAAGAACCACACATAACGTCAGAGTTTATATTTGTGAAATATGCAGTGAAAATTTTAAGAAACGAAGTAATTTAACATTTCACTTGGATGAAGTACATGGTGGAACAGATGGTGAATATTGCTGTGAAACATGTCAGCGTGTATTTAAAAATTTACGACTCTTTCGTATAcataaacgtattcatttaaattcaacaaaaactttccaatgtcatcaatgtgataagctatatagttctaaaaatttattggatgaacatatgaatatgcataccggggatagaccatataaatgtaaacattgttcaaaagattttgcatcaaagtatacattgactgcacatatgaaaattcattcgaatagaccgcgaccatacaaatgtaaaacttgtcctaaagctttttatagtgtacaaaatttacaacagcatgaaagaattcatactggcttaaaggaatttatttgtgaagtttgtaataaatgttttgggacatcacataatcttgaggtacataaaattattcatactggtttcaaaccttttatgtgtcggacttgtggtaaagcttttgcacgtagagctgaagttaaagatcatgagcgaattcatactggtgaaaaaccttttgtttgtgaaatttgtcaagtttcatttgctcaaagatcgaatttaacaacacataaaagggctacacatttcaatgataaacgttacaaatgtgaaaaatgtgatcgttcatttaaaagacgacgtcttttagattatcatattcgtgcaacgcatactggagaaagaccttataaatgtgacatgtgcaatgcaactttcgtttatcctgaacactataaaaagcatttacgtatacattctggtgttaaaccgtattcctgtgaagtttgtggcaaagcatttaatagtcgtgataatcgaaatgcacatagatttgttcatagtgataaaaaaccttatgaatgcttggtgtgtggacatggttttatgagaaaACCTTTATTATATAACCATATGAAGCTATCAGGCCATGTTAATGATACCATTATTATAAATCAGCCTAGAATATGCACTGAAAAGCTCGATGCTGAAAATATACAAATTGATAATTTTATAGAAGAAACTATCACTGATGAAAGTGAAATTATTGAGGAAGATTTAGTTGTTGATGGTACTGTATCTTTTATGGAAAAAGATATAATAATTAATGAAGATAGTGAAAATAATGAAGATAATTCCATGTCAAGCCAAATAATTAGTGATATAAGTGAATCTTTTACTACTGAAGAAGTTATTGTATCGAATATTAAGACCGAAAATGGAGATTTTGAAATTTTAGAAATTAATGAAAAAGGCGGGGAAGGTATTAAATCTGAGTTTTCATGGGAGAATTACGTTTCGGAGGAGGAAACTTAA
Protein Sequence: MSVNSATANGSQLKICFLCYQPVLEDYANIFEENIQCLNGECPISDVLSKLLSQELDESEVHSKIICLSCTQNIQEYEESQQLLLQKKSKILGNFNKTLINQEDFVVGLGVGDQNDEAFVDDETAIDDDFDNENVQEIEINEATMLSNHENMKLPEIITENETDCENKCKDGSIIGTVNVNEEYFTENSESMIEIIAENDKPFDHLSNDQEEIYVAEITEVKYDEDLIENSEAGNDVENFTNLVQESKKELISKPAYCMNKQNFNCLLCPDTIAEKIEFDANGISAHLRTTHNVRVYICEICSENFKKRSNLTFHLDEVHGGTDGEYCCETCQRVFKNLRLFRIHKRIHLNSTKTFQCHQCDKLYSSKNLLDEHMNMHTGDRPYKCKHCSKDFASKYTLTAHMKIHSNRPRPYKCKTCPKAFYSVQNLQQHERIHTGLKEFICEVCNKCFGTSHNLEVHKIIHTGFKPFMCRTCGKAFARRAEVKDHERIHTGEKPFVCEICQVSFAQRSNLTTHKRATHFNDKRYKCEKCDRSFKRRRLLDYHIRATHTGERPYKCDMCNATFVYPEHYKKHLRIHSGVKPYSCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGHGFMRKPLLYNHMKLSGHVNDTIIINQPRICTEKLDAENIQIDNFIEETITDESEIIEEDLVVDGTVSFMEKDIIINEDSENNEDNSMSSQIISDISESFTTEEVIVSNIKTENGDFEILEINEKGGEGIKSEFSWENYVSEEET

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -