Basic Information

Insect: Acrobasis repandana
Gene Symbol: -
Assembly: GCA_963576875.1
Location: OY756236.1:6947976-6965407[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 9.9e-05 0.0086 17.4 0.9 1 23 253 275 253 275 0.99

2 12 0.56 49 5.6 2.3 1 23 283 306 283 306 0.93

3 12 0.00068 0.06 14.7 2.0 1 23 408 430 408 430 0.98

4 12 0.013 1.1 10.8 3.4 1 23 438 461 438 461 0.96

5 12 8 6.9e+02 1.9 4.8 1 23 465 487 465 487 0.97

6 12 0.00082 0.071 14.5 4.1 1 23 492 515 492 515 0.97

7 12 0.31 27 6.4 2.8 1 23 519 542 519 542 0.94

8 12 1.6 1.4e+02 4.1 0.3 1 20 561 580 561 582 0.92

9 12 0.17 15 7.2 0.4 2 23 633 655 632 655 0.95

10 12 5.2e-06 0.00045 21.4 0.9 1 23 664 686 664 686 0.98

11 12 0.0027 0.24 12.8 1.0 1 23 692 714 692 714 0.95

12 12 1.5e-05 0.0013 19.9 2.5 1 23 720 743 720 743 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	9.9e-05	0.0086	17.4	0.9	1	23	253	275	253	275	0.99
2	12	0.56	49	5.6	2.3	1	23	283	306	283	306	0.93
3	12	0.00068	0.06	14.7	2.0	1	23	408	430	408	430	0.98
4	12	0.013	1.1	10.8	3.4	1	23	438	461	438	461	0.96
5	12	8	6.9e+02	1.9	4.8	1	23	465	487	465	487	0.97
6	12	0.00082	0.071	14.5	4.1	1	23	492	515	492	515	0.97
7	12	0.31	27	6.4	2.8	1	23	519	542	519	542	0.94
8	12	1.6	1.4e+02	4.1	0.3	1	20	561	580	561	582	0.92
9	12	0.17	15	7.2	0.4	2	23	633	655	632	655	0.95
10	12	5.2e-06	0.00045	21.4	0.9	1	23	664	686	664	686	0.98
11	12	0.0027	0.24	12.8	1.0	1	23	692	714	692	714	0.95
12	12	1.5e-05	0.0013	19.9	2.5	1	23	720	743	720	743	0.98

Sequence Information

Coding Sequence: ATGTTAGAATTAAAAGCCTGCACGGTGTGTTTTAGCACAGAAACAGATGTCAAGTTATATGATATGGATACTGGTCAATTGCGACAAATATTCAATGTGTTGACTGGATTGCAGACTCGCCTTGGCAATGGTATGCCCAACTACTTGTGTGTGGAATGCTCAAGCTATGTCAGGCGCTTCCAGAAATTCAGACTGAAGTGCCAAACGGCCAATTTTGTGTTACGAGAAATCATTGAAAGGAATGGTGAGatCAAAACGGAAGACCTACAGGCCATCGACCGTGAAACCCTGGAAATAGCTCCAACACTGGCATATGTTAACCTAAACAAAGTACATTTCGAAGAGGTGAAGTTCAGATGGACTAGACCTAACCGTCCTGGTGTAACTCCTAAGGATAACATACCTGTTGCGAACTACAGCGATACTAGTAAAGATGACGTCAAAAAGAGCCctaataaagaaattaagaaGGAAAGCTATGTTGATAATGACACAGTGATTGAAACATATGCACATGAACCACAAAATAGTACAGATGATGATTTGGATAATCATGATATTATTAAGGATGATATTGATAGTGATTGCAGAAGAAATGATGAGACATACAATAGTGAAGAACCAACAGCGAAAAGGTCTAAAACAGATGATGTAGATGGTTCTGAATTTGATGTGGAGTATGCTACATTATATCCTATCACTACAAAAGAAGCAGAGGCCGCTGCAGAGATCTTCAGGACATTTTCTTCGGGGAAATATCAATGCAATActtgtttaaaaagttacaatacTGAGAGTCGCTTGGCTATCCATTTGAGGATGCATGATacgCATACCAGTGGGCCCTTTCGCTGCGACGTGTGTATGTTCTACTACAAGACTGAGTTCCTGCTCAAGACACACATGACGGACAAACACATGTACAAGTATGTGTGTAGGAAGTGTCCAGAAGTTAACTTCACTAGaGTATCAGCAAAACATCATTACACCTACTCACATTTAGACAAACGGCAAGTATCTGGCCATAAATGGACTCAACTAAGACCCAATTGGCTCGACCCTCGTGGGGGGAAGAGGATAAAGGGGGTGTCCGTAGTAAAATCTAAGCGGAAAGTGCCTCACAAGCCGTCAGATTTCCCTCTCAGGTCTGCGGTAAGCCACGAAGAGCAGTATCGGCTGGTGTGGGACAGACGATCGTCCAGGAACTACATCGAGAGTCAATTCAAGTGCGAGCTTTGTTTCAAAGGCTTCAGGGTGTTGGCCACGTACAACAAACACATGACCAAACACGACCCGGCAGTCTCCGGGAAGCACCAGTGCGACGTCTGCAAAATGTTCTTTAAGGACACCCGCAAGATGTACAAACACATGATCATCAGCCACGTCACTAAATACTCCTGCCAACTATGCAAACATATATGTTATAAcagaaatcaAGCAATAATGCACTATAAATGGCACAAGAACGTCACATACAAGTGTCCTCACTGTGATAAAGTTTTCAGCAAAATCTCGACCCATCTAACCCACATCCGCATCAAGCACCCCTCGTCATTCATGTGCACCCTGTGCGGCCACAGCTATGTCAGCGAGACGGGGCTGTTTTGTCACAAGCGGATCGCGCATACTACAGAGGAAGCCGAGCTGAGCAACTCGACGGAGGTGGACCCCGGGCACCCGTTCTTCTGCGCCGACTGCAACATCCACTTCCTGAACGAGGACGCCTTCAACACGCACCTCGGCAGCTCCAGCAAACACGCCACCACTAACGTATCAATAAAAACGAAGGTGCGGGATTTAAAGCGCGCGGGCGACAAGCGCGGCGCGGGCCGGCGCGGGCGGCCGAGCCGCGCCGGCCACTCCGACATCATCAACAACGGGCTCGCTACCTCCACCAGCTGCGAACTGtgcGGCAAGTTCCTGGTAAACGACGTACAGACACGCAAACACTATGAGACCGAGCACCCCGGGCACGACTACCTCAAGCGGTACATGTGCGATGTGTGCGGACACACCACTAAGCAATACGCGAACCTGGTGGTGCACATGCGCACGCACACGCACGAGAAGCCGTACGACTGCCCGCACTGCGACCGCCGGTTCAGCATGGGCAGCAACCGGGACAGACATCTCGTTGTGCACACGGGCGAGAAGCGCTACCAGTGCCAGCACTGTAGCCGCCGCTTCACGCAGAGCAGCGCCGTGAAGCTGCACATCCAGACCGTGCACCTCAAGATACCGTACGCGCCCTGGGACAAGAAGAACCGCAAGCGACGCAAGGAGCTGGAAGGTACATCAGCTCCGGTGAGTGCAGTCAACGCGTTGACGTTCCAGTCACAGCCGCAGAAGATATTACTCGACGCTCAAGGGGACTACCTCAACGCGTACATCAATTATAATGACGAGTGA
Protein Sequence: MLELKACTVCFSTETDVKLYDMDTGQLRQIFNVLTGLQTRLGNGMPNYLCVECSSYVRRFQKFRLKCQTANFVLREIIERNGEIKTEDLQAIDRETLEIAPTLAYVNLNKVHFEEVKFRWTRPNRPGVTPKDNIPVANYSDTSKDDVKKSPNKEIKKESYVDNDTVIETYAHEPQNSTDDDLDNHDIIKDDIDSDCRRNDETYNSEEPTAKRSKTDDVDGSEFDVEYATLYPITTKEAEAAAEIFRTFSSGKYQCNTCLKSYNTESRLAIHLRMHDTHTSGPFRCDVCMFYYKTEFLLKTHMTDKHMYKYVCRKCPEVNFTRVSAKHHYTYSHLDKRQVSGHKWTQLRPNWLDPRGGKRIKGVSVVKSKRKVPHKPSDFPLRSAVSHEEQYRLVWDRRSSRNYIESQFKCELCFKGFRVLATYNKHMTKHDPAVSGKHQCDVCKMFFKDTRKMYKHMIISHVTKYSCQLCKHICYNRNQAIMHYKWHKNVTYKCPHCDKVFSKISTHLTHIRIKHPSSFMCTLCGHSYVSETGLFCHKRIAHTTEEAELSNSTEVDPGHPFFCADCNIHFLNEDAFNTHLGSSSKHATTNVSIKTKVRDLKRAGDKRGAGRRGRPSRAGHSDIINNGLATSTSCELCGKFLVNDVQTRKHYETEHPGHDYLKRYMCDVCGHTTKQYANLVVHMRTHTHEKPYDCPHCDRRFSMGSNRDRHLVVHTGEKRYQCQHCSRRFTQSSAVKLHIQTVHLKIPYAPWDKKNRKRRKELEGTSAPVSAVNALTFQSQPQKILLDAQGDYLNAYINYNDE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00640867; iTF_01302772;
90% Identity: -
80% Identity: -