Arep029203.1
Basic Information
- Insect
- Acrobasis repandana
- Gene Symbol
- -
- Assembly
- GCA_963576875.1
- Location
- OY756243.1:5048550-5062737[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0064 0.56 11.7 2.2 1 23 215 237 215 237 0.96 2 10 0.044 3.8 9.1 0.1 1 23 244 266 244 266 0.97 3 10 4.6 4e+02 2.7 0.9 9 23 266 280 264 280 0.92 4 10 0.00047 0.041 15.2 0.9 2 23 286 306 285 306 0.96 5 10 0.083 7.2 8.2 1.2 2 23 313 335 312 335 0.94 6 10 3.4 3e+02 3.1 3.6 3 21 345 363 344 368 0.92 7 10 0.00074 0.065 14.6 1.0 2 23 374 396 373 396 0.95 8 10 0.0018 0.16 13.4 0.2 1 23 401 424 401 424 0.98 9 10 0.0036 0.32 12.5 0.1 2 23 434 455 433 455 0.94 10 10 0.00047 0.041 15.3 0.9 1 23 461 484 461 484 0.97
Sequence Information
- Coding Sequence
- atgattttaaagGAAGAACAATTGAGGTTTGAAGAACAAAATGATCCATTAGGAATGACATCTGAAAATGCCAATGTGGAGTCGGACCAAGAtgtggatgatgatgaccctCTACTGAAATCTGAagttgatgatggtgatgatgatggggTTTCTTCCACTGGAATTGAGAAAGAGACACAGCCCATCAAAACCACACGTTTAATTGCACCAAAGCCGCCACCGGTCATCAAGTTAATTCGCTTACCGCCCGGACCTATACCAGAATACCTGAAACCAGTACCAGTCCCACCCAAAATAATCAAATGCGTCACCAAATCTCTGAAACCGAAGGAAAAGGATTTGAAATTggttcccatagaaaatgtaccAAAAGAATGTTTTCCAAAAAATGTTCCAAAACATTTTCGAAAAATTGTCTCAGAAgaacattttacaaaaaatgtttcaGAAGAACATTTTCGAAAAATTGTCTCAGAAgaacattttacaaaaaatgttcCAAAAGAATATTTTCCGGAGTCAACGGCACAGGAGAATGATAAAGTGAGGGGCAAGTACATAATAAAGATTTTGACAGAAGAGAATTTGAAGGCAATGAGATTGAAGAGGTTCAAAGAAGCGAAGGAGAATAGGTTCAAGTATTTCTGTTATAAGTGTACGGAGTTTTTCAAAACCAAGACAAGTTTGGATGGTCATATGGATCTACATGCTCTGacTACCGGTGACTTTGTGTGTCGTGTGTGTGAAATGAAGTTAGAAACAGAAGACTTATTGACAATACACACTAACGCGCATTTCAGAAACAGGAAACTTTGGAAGAAACACGCGCGGGCGCATAATCACACGCAGGTAACATGTCCGCTCTGCCACAAATTCGTTCGGAACGACGCCTTAAAGAGACATATTagAGCACACGCTCCTCAGCCGATATTGACGTGCGACGAGTGCGGCAAGAAACTTAGAGGCCGCTTGAGACTGTACCAGCACAAGAAGAAAGAACATCCAAATCTAAAAGACGGCGAAGCATACTGTGCCCAGTGCAACGTGCAGTATAAGAACAAATTCTGCTACCAGATGCATCTGAAGCAGAGTTCCAAGCACGTGCAAGAGAAACAGCAGTGTCCAGAATGCGGTAAAGAGTTTTCTTGCGCTATGTACCTCAAGGCACATAGAGAGAGGCTGCACTCGGCCGACGGCTACAAATGCGAGCAGTGTCTACTGAATTTGACAAGCAGCCCGGCACTGAGGCGCCACATCATGAAAGTGCACGAGGGGAAAGAGCCACCCAAGAACAAGATGTGCGACATTTGCGGCCGGAGCTTCGCGacGATAGCAATTCTACGCCAGCACAGGAACGGGCACCTCAATATCCGGCCCTATAAGTGTAAAGAATGCGGCGATACCTTCAGCTACAGTGGCGCCATGTATACACACATTAAACTCAAACATAGGAAAGAAagaagagaaaagaagaaaaaataa
- Protein Sequence
- MILKEEQLRFEEQNDPLGMTSENANVESDQDVDDDDPLLKSEVDDGDDDGVSSTGIEKETQPIKTTRLIAPKPPPVIKLIRLPPGPIPEYLKPVPVPPKIIKCVTKSLKPKEKDLKLVPIENVPKECFPKNVPKHFRKIVSEEHFTKNVSEEHFRKIVSEEHFTKNVPKEYFPESTAQENDKVRGKYIIKILTEENLKAMRLKRFKEAKENRFKYFCYKCTEFFKTKTSLDGHMDLHALTTGDFVCRVCEMKLETEDLLTIHTNAHFRNRKLWKKHARAHNHTQVTCPLCHKFVRNDALKRHIRAHAPQPILTCDECGKKLRGRLRLYQHKKKEHPNLKDGEAYCAQCNVQYKNKFCYQMHLKQSSKHVQEKQQCPECGKEFSCAMYLKAHRERLHSADGYKCEQCLLNLTSSPALRRHIMKVHEGKEPPKNKMCDICGRSFATIAILRQHRNGHLNIRPYKCKECGDTFSYSGAMYTHIKLKHRKERREKKKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -