Basic Information

Insect: Acrobasis repandana
Gene Symbol: -
Assembly: GCA_963576875.1
Location: OY756243.1:4979656-4991669[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.034 2.9 9.4 0.7 1 23 217 240 217 240 0.97

2 10 0.33 28 6.3 0.4 1 23 247 269 247 269 0.97

3 10 0.026 2.3 9.8 4.4 1 23 303 325 303 325 0.98

4 10 0.00058 0.05 15.0 0.3 2 23 330 352 329 352 0.97

5 10 0.0001 0.0088 17.4 0.1 1 23 359 382 359 382 0.96

6 10 8.4e-05 0.0073 17.6 6.6 2 23 388 409 388 409 0.97

7 10 0.0085 0.74 11.3 0.1 2 23 420 442 419 442 0.91

8 10 4.7e-05 0.0041 18.4 0.9 1 23 448 471 448 471 0.94

9 10 0.0011 0.094 14.1 3.4 3 23 482 502 481 502 0.98

10 10 0.057 5 8.7 1.6 2 23 509 531 508 531 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.034	2.9	9.4	0.7	1	23	217	240	217	240	0.97
2	10	0.33	28	6.3	0.4	1	23	247	269	247	269	0.97
3	10	0.026	2.3	9.8	4.4	1	23	303	325	303	325	0.98
4	10	0.00058	0.05	15.0	0.3	2	23	330	352	329	352	0.97
5	10	0.0001	0.0088	17.4	0.1	1	23	359	382	359	382	0.96
6	10	8.4e-05	0.0073	17.6	6.6	2	23	388	409	388	409	0.97
7	10	0.0085	0.74	11.3	0.1	2	23	420	442	419	442	0.91
8	10	4.7e-05	0.0041	18.4	0.9	1	23	448	471	448	471	0.94
9	10	0.0011	0.094	14.1	3.4	3	23	482	502	481	502	0.98
10	10	0.057	5	8.7	1.6	2	23	509	531	508	531	0.92

Sequence Information

Coding Sequence: ATGTCTCAATATCAACTTCAGGGTGATTCAAACTACATTCGAGATACAGAATTATTCAAAAGATTACAATCTAGAAATGTTTGCATTTCTTGTTTATCTCGAAATGGCCCGTTTGTTAATTTGTCAAATTGTAAACATGCCAGTTTTTTCGAATATTTCCTTAAAATTAAGATGGAATTTGCTGAGCTGTTAGTGTGTACTTATTGCCATCACCTTTTGAAGAAAATTGAGGTGTTCAGACGGCAAACTGAACAAAGCTTCGCCTGTCTCAATGACCagTCCTTAGAGTTAGACTCCTCACCAAACAAAAGCCACCTGCAGACCTCGACCATAGACACGACGGACAGTACAGAGCCTATAAAGGAGGATGCACCTGACGAGGACTTTACTTTCGAAGAGTTTGTCACGGAGGTGAAGATAGAACACGATTCAGACGTTGACGTACCGCTGTCGGAGATTAAGAAGGAAATTGCGTcTGTTCCAACCCGCCCCAAGCGCAAAAGCATAACCAAAACGCCACCAGTAAAGAAGAAGAGTAAACTAGAAGAAAAATACGACGGCAAAATTCGGGTGGTCCATCTGAGTGAAGGGGAGATGCTGAGTGAGAGGGAAAGGGATAGGAACAAAGCGAGCTTTTTGAAACTGCCGTATAGGTGTGAGGATTGCATCACGGGGTTTGACCATGACATTAATTTAAAGGACCATATTGAAAAGAGACATGGACAGaaaaagaagaatttcgTTTGCAACATCTGCAAATCCGTGTTGGGATCGGATAATTCTTATAAAGAGCATGTAAAGAGACATTATAAAAGATACGAATGCTGCGCGTGCGGCAAACGCAACAATAACGTATACTCGGTGGTGACGCACTACAATGAGCAGCACGGGGCTATCGATGCTAGCTATACATGTCGAGACTGCGGGTATACTACCGCTTCGCACCGAAGTTACCGCTACCACCGAGACAAGCACAAGCCGAAGCAGCAATGCAAGTTATGCACCAGCTCCTTCGTCAATGCGACAGGGCTTCGCGTACACATGTACACTGTCCACAAGCAGTCTAGCCGTATCTTCTCCTGCGTCACATGCAACAAAGTGTACAACTCCAACTCCGGGCTTGTGGCGCACATCGCCTCCGCTCACACGAGCACCAACGCATATTGTACACTGTGTAAGAAACATTTCAACACGGAGAGCAATCTGACGCATCATCTGAACACACATTCGGCACACGTGGGAGATTCCAACAAGGTGACGTGTGACGAGTGCGGAAGCCTGTTCCGAACTAAGACCGCGCTTTTAGAGCACATTGACTTCATTCATCTCGGGAAGAATACCTTCGAATGCGGGAAATGCTCTAAGGTTTTCATGAACAAGGCAGCTCTGAAGAAACACACCAATTTCGTCCACGAAAAGATTCGGCCGCCGCGGAACAAGATCTGCGATCATTGCGGTAGAGGATTCACGACGCTGTGCATCCTGCGCTCGCACATCAGAACGCACACGGGCGAGCGTCCACTGCACTGCTCGCGATGCCCGGCTACGTTTGCGCATAGCGCCGCGCTCTACACCCACAACAAGCTGCTACATCAAGCACACATGTAG
Protein Sequence: MSQYQLQGDSNYIRDTELFKRLQSRNVCISCLSRNGPFVNLSNCKHASFFEYFLKIKMEFAELLVCTYCHHLLKKIEVFRRQTEQSFACLNDQSLELDSSPNKSHLQTSTIDTTDSTEPIKEDAPDEDFTFEEFVTEVKIEHDSDVDVPLSEIKKEIASVPTRPKRKSITKTPPVKKKSKLEEKYDGKIRVVHLSEGEMLSERERDRNKASFLKLPYRCEDCITGFDHDINLKDHIEKRHGQKKKNFVCNICKSVLGSDNSYKEHVKRHYKRYECCACGKRNNNVYSVVTHYNEQHGAIDASYTCRDCGYTTASHRSYRYHRDKHKPKQQCKLCTSSFVNATGLRVHMYTVHKQSSRIFSCVTCNKVYNSNSGLVAHIASAHTSTNAYCTLCKKHFNTESNLTHHLNTHSAHVGDSNKVTCDECGSLFRTKTALLEHIDFIHLGKNTFECGKCSKVFMNKAALKKHTNFVHEKIRPPRNKICDHCGRGFTTLCILRSHIRTHTGERPLHCSRCPATFAHSAALYTHNKLLHQAHM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00640803; iTF_00012366;
90% Identity: -
80% Identity: -