Arep029499.1
Basic Information
- Insect
- Acrobasis repandana
- Gene Symbol
- -
- Assembly
- GCA_963576875.1
- Location
- OY756243.1:8893884-8916270[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.039 3.4 9.2 1.2 2 23 310 332 309 332 0.95 2 13 1.1 94 4.7 1.3 1 23 338 360 338 360 0.94 3 13 0.48 41 5.8 4.3 1 23 364 386 364 386 0.97 4 13 7.3e-05 0.0063 17.8 1.0 1 23 391 414 391 414 0.97 5 13 0.1 8.8 7.9 0.6 3 23 421 442 421 442 0.97 6 13 0.00028 0.024 16.0 1.6 1 23 474 497 474 497 0.94 7 13 0.014 1.2 10.7 0.1 3 20 510 527 508 529 0.92 8 13 1.7 1.4e+02 4.1 0.8 2 23 535 556 534 556 0.95 9 13 0.00072 0.062 14.7 2.1 2 23 562 583 561 583 0.97 10 13 0.00093 0.081 14.3 1.4 2 23 657 679 656 679 0.95 11 13 0.00015 0.013 16.9 2.8 1 20 684 703 684 706 0.93 12 13 0.022 1.9 10.0 0.4 2 23 712 731 711 731 0.95 13 13 0.0014 0.12 13.8 0.1 1 23 737 760 737 760 0.97
Sequence Information
- Coding Sequence
- atgtggtCTATGAAGCCTGTAAAGCTCGCGGATGCTCAGATTAGGAAGGAAGTGCTCGCCTGCAGGGCCTGCCTGGCGACAGAGGTCGTTCTCTACAATATCCACGAAAATAACCTCGGAGAGGATTATTCCCAACTTATTGGGGTCCCTCTCCAGGACCGCTTCCCACAGCAGCTGTGCTGTTACTGCGCGGCATTGCTGCAGAAATTTGCCGCATTCAAGGAAAGATGCTGCAACGCATACAATCTGTTGATGGATGCAAGTTTCAATGGACAAAGTatgacGGTAAAAAACATACGCCACGTCCACGCCTTGCACAAAGAAGTCCACCTACCGTACGCCCTCTCAGGGACGGAAAATGAAGATATTAACGAAGAAACTGGTACTGAACCTATGTCTGATTATACTATTAGTAAAACTGAGGTCAAAGTTGAGTTAGAAGACCATTCCAATGAAGTTAAGCGGAGTAACACAACTAGAACAAAGAAAGCAGATTTTagttctgatgatgatgatttatgtgATGATACAGAAGATGTCATTAATGATAATGTTGatacaaataaagaaaatgatGAGGACATAGATATGACAATAGGAGACCTGATAGACGCCGACGACGAAGCATTTGAAATAGTTGAAAACAAATGGATGAAAGGAGAGTGTAAAATAGAATATCTAATAAATGATGTTGACGCTGCACTTGATGCGTTCAGGAAAAGAGGTCCAGAGAAAAAAGATGGTAAATCTAATGAAAATGACAGAGAAACAAGAGCATTTGTATCAATGCCGACATACCAACAACTACAGCGGTTCACTGATAAAGATATAATGGCGCTCGCGAATTCTTACGGCTTTCGAGTGAAGTTTTTAAAAGAAGAGCAACAGTTACAGGAACTGGAAGAGATGAAACAGAGACGAGGATGCGTATGCCAAATATGCGCGAAACGGTTAAGAAATAAAGTGTTACTCGAGGGGCATACAAAGAAATGGCACAAACCAACAGCTAAATATTCTTGTAAGATTTGCAATGTAGGATACAACATTAGGAACATGTTAACATGTCATGTGAGATGGCATAGAGTCACATACTGTTGTCAAGTGTGCGAGTTTAAAACGAAGAATCGCTTGGATATGCGAAGACACCAAGTGAGGCATAAGAATAAGTGTTTTATATGCAATTATTGCGGTAAGCCATTTCAAACGATCCTTACTTTGCATAAGCATATACGGATATGGCATTCTTCATCTTATCCGTGGTGCGATGTGTGTGCGATAGCGTTCACAAACAAAAGAGGTTTACATCTTCACGGTAAAATGATGCATAAGAACGTGACAATGGTGTCCTGTGAGACGTGTAGTGCTGAGTTTTTGTGTGATAACGCATTGGAGAAACATAAGAGGTTGGTCTGCGACTTGTATAATTGTAAACACTGCGGATATGTGTTTGGGAGTGAACATTTGCTGAGGATGCATTTGATTTTGGTGCATAATGTACCTAGTAATATTGGTCCGTTAGCATGGGACTGCTGGGAATGCGGCGTCTCTTTCCACAGCAGTCTTGGCCTGCAGCGGCACCAGGCGTCCTGCAGACGAGGCCTGCACTGTGCGCAGTGCGGGGAGCTGTGCGCGGACGGACAGTTGTTGCTGCAACACGCGAAGACCCATGATGCTTCTGGTTTGACGTGCGCAGAGTGCGGCGAGAGCTGTAAGAACGTGCATGGCCTTCAAGTGCACTACAGACGACACTGGCCCGAGGCGATAGAGCCCGGCACGAGGAAGCGGAGGCTGAATGCGGCGGGAGAGCCCATACCGCGCAAGAAGAGGAAATTCGCGGCTAGATACTTCGGCAGTCACGATGTCAAGGTGTGGGGTGTGCTGGACGGGAAACTGGTCCCGCAGACGCCGGACGGGCGCGTGCTCGTGGGACACGTCGCGACGAAGGACGAGGCGAGCGCGAGGCAGTGCATGTGTCATGTGTGCGGAAAGTCTTACGCGAGCATACCCGTGCTGCGGATGCACATGAGACAAGTGCACGACGAGGGCGTGTACCTGTGCGACCAGTGCCCGAAGAGGTTCTCCAACAAGCGGGCGCTGCAGAGGCACATATCGTGCCACAGCAAAGATGAAGTGAGGTGTCCGAAGTGTCCGAAGGTATTGAAGACATCCCTCGCCAGGCATATGTTGAAACATACACAAGAGAAGAGACACGTCTGCCAGATCTGCGGTGAAGCCTTCGCGATCTCCACCGCTGTGAAACTTCACATCAAGACAGAACACCTCCAAATTCCTTCGCCTGACAGGGAGAGGAAGCAGCGGCGACAGAGAAAAGATACAGAAAAGGTCAAGGGCAAAGGTACAGTCAATGTTAGGAGACAGGGTGATGAGATGTGTAGAAGAGTGAGAAAGGGCGATGGAAGAGCGAGAAAGGGTGATAGAAGagttgagatagtgaatgaggATGGAGAAGATGAGATGACGAGTGTGGAAGTCGATGAACAGTATGATTTTGATTATTACGAGGTCGAGGAAGATTGA
- Protein Sequence
- MWSMKPVKLADAQIRKEVLACRACLATEVVLYNIHENNLGEDYSQLIGVPLQDRFPQQLCCYCAALLQKFAAFKERCCNAYNLLMDASFNGQSMTVKNIRHVHALHKEVHLPYALSGTENEDINEETGTEPMSDYTISKTEVKVELEDHSNEVKRSNTTRTKKADFSSDDDDLCDDTEDVINDNVDTNKENDEDIDMTIGDLIDADDEAFEIVENKWMKGECKIEYLINDVDAALDAFRKRGPEKKDGKSNENDRETRAFVSMPTYQQLQRFTDKDIMALANSYGFRVKFLKEEQQLQELEEMKQRRGCVCQICAKRLRNKVLLEGHTKKWHKPTAKYSCKICNVGYNIRNMLTCHVRWHRVTYCCQVCEFKTKNRLDMRRHQVRHKNKCFICNYCGKPFQTILTLHKHIRIWHSSSYPWCDVCAIAFTNKRGLHLHGKMMHKNVTMVSCETCSAEFLCDNALEKHKRLVCDLYNCKHCGYVFGSEHLLRMHLILVHNVPSNIGPLAWDCWECGVSFHSSLGLQRHQASCRRGLHCAQCGELCADGQLLLQHAKTHDASGLTCAECGESCKNVHGLQVHYRRHWPEAIEPGTRKRRLNAAGEPIPRKKRKFAARYFGSHDVKVWGVLDGKLVPQTPDGRVLVGHVATKDEASARQCMCHVCGKSYASIPVLRMHMRQVHDEGVYLCDQCPKRFSNKRALQRHISCHSKDEVRCPKCPKVLKTSLARHMLKHTQEKRHVCQICGEAFAISTAVKLHIKTEHLQIPSPDRERKQRRQRKDTEKVKGKGTVNVRRQGDEMCRRVRKGDGRARKGDRRVEIVNEDGEDEMTSVEVDEQYDFDYYEVEED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -