Arep029128.1
Basic Information
- Insect
- Acrobasis repandana
- Gene Symbol
- -
- Assembly
- GCA_963576875.1
- Location
- OY756243.1:3692312-3711291[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.038 3.3 9.3 0.1 1 23 251 273 251 273 0.98 2 11 0.34 30 6.3 1.6 2 23 282 303 281 303 0.94 3 11 0.0002 0.017 16.4 1.5 1 20 334 353 334 355 0.94 4 11 0.0045 0.39 12.2 1.6 2 22 362 382 362 382 0.93 5 11 0.00059 0.051 15.0 1.1 2 23 400 421 399 421 0.92 6 11 0.00055 0.048 15.0 0.6 1 23 426 448 426 448 0.98 7 11 7.5e-05 0.0065 17.8 5.0 1 21 457 477 457 482 0.94 8 11 0.006 0.52 11.8 2.3 1 23 490 513 490 513 0.89 9 11 0.00076 0.066 14.6 0.3 1 23 519 542 519 542 0.95 10 11 0.0077 0.67 11.4 0.5 3 19 556 572 554 573 0.91 11 11 0.0067 0.58 11.6 1.2 1 23 586 609 586 609 0.98
Sequence Information
- Coding Sequence
- ATGAATGAAATAGACATAAATATCGAAGGATTCAACGTCAATGGCGTTTGTGTGGGCTGTTTAAACTATAAACGCAAGATGTATAACGATACTCGCATCAATGGATGTTTCAAATTACTCGGTAATATTGAGGTACCAGACTGCCTTTACATACAAGTGTGCTGGGAATGCCTTGCTGCTGTGAGGACAGTTGATCGCTTTCAGAAGCAgattatcaggtcttttgagATCCTCCATGATTATTCCCGAAAGCACATGTTCCTAGACAACCCATCGGACCTATCACAACACGCTCAGACACGTCTCTCCACATCTGTGATGCTGACAGAGCCTACCCCTTGCCAACCAGTGCCTGACAAAGTTGAAGTTAAAGAGGAGCCTCAAACTCAATTGATAGATATTGAGATAGTACCTCCTCTCAAGACCGAGGATGAAGACGACGTCCCTGCTGACGACCTGCCCATGGACGATGGGCCCATAGACGACAGTTCCATAGACAATACAACCATAGAAGCTCCGAAAGAACAACAATCGTCTGACGATGACGTATGCCTTTCTAAGCtgaggaagaagaaaaagaaaaagaagaaagtcaAAAAACAAGATACAAAAGTAACTAAACCAGGGAAACCTGAGAAAAACCTAAAGAATCTGCCCAAAGACCTCGTTGAGATGTACACTATGACAGAGGAGGAGATGTGGGAAGTCCGCAAGGAGGATGTGACCAGCGCAGAGTTCCAGACCATGAAGTACAGATGCGAGGATTGTGTCATGGGATTCTTGTCTTTGAAATTGTTGAACGTTCACATGGGGAGGCATCAGCCCAAAGGCGACACGTCCTGCCAATGCGACGTGTGCAAAGCCTACTTCCTAACTAGGGAGAACCTCTCTTCGCACCGCGCGCTGCACGCGGCGGGGCTCCGCTGCCGGCGGTGCGGGCAGCGGAGCGGCGCGCGGAGAGTCATGGCGCAGCACGTGCTCACCCACGACGTGGCTGTACACAAGTGTACGGACTGCGATGCCAGGTTTAGCTCGCGCTCCAAGCTGACGTACCACCGCTCGGTGTGCAGCCGCGAGCGGCCGCAGTGCGACTGCTGCGGGAAGGTGTTCGCGAACAAGATGACGCTCAAGTATCACCTCAAGACCAACAAAACGATTAACACAAAGGAGCAGAAATCTAAAGAGAAGGTGTACATTCCGTGCAAGGGCTGCGACAAGGTCTTCCACTCCAAGAAGAGTTACAAAGCTCATTCGGTGATCCACGACGGGCTCACGTACCCGTGTCAGATCTGCGGGAAGCTGTTCCAGTGGAAACGGAACCTCGCGCGGCACACCCGCAACCACCGAGAGAAGGAGGCGGGCGAGCTGCACGAGTGTCGGGAATGCGGCAAGTCGTTCTCGAGCCGGGACTGCTACAACAACCACATGAGGCTGAGCAAGAGACACGCGCATCCCGACGCTTATATCCACCAATGCAGTTTTTGCGGGAAGAAATTCGCGACGAAATGGTGCATGGTGGACCATGTCGATTGGGAGCATCTGAAGAATATTCGGTACCAATGTAACATCTGTTTTAAGGCGTTCAAAACGGCGAAGATATTGGTCGCGCACGTCAAGAATATACACGAGGGGGCGAAACGGGGGGAGGAGGAGGGGGAACATCTGTGCGAGATATGCGGGAAGTCCTATAAGACGGAGAAACGTCTCAAGGGCCACGTTTGGGCCATGCACACGAAGCGTTCCACGAGCAAGACGTTCAAATGCAAGCTCTGTCCGGCCACCTTCACTTGGCAGACGTCGATTTACAAACATATGAAGATGATGCACGACAAGAGGAACAAGCCATCGAGATCGGCCCCCCTGAAGAAAGAGGAATCTCATCCGGACATGGAATTTGCGAACCGGATGCAGTTCTACCAACACAATATAaacaacatacaaaatattgcgCCAACAATACCTATTTCATACTAA
- Protein Sequence
- MNEIDINIEGFNVNGVCVGCLNYKRKMYNDTRINGCFKLLGNIEVPDCLYIQVCWECLAAVRTVDRFQKQIIRSFEILHDYSRKHMFLDNPSDLSQHAQTRLSTSVMLTEPTPCQPVPDKVEVKEEPQTQLIDIEIVPPLKTEDEDDVPADDLPMDDGPIDDSSIDNTTIEAPKEQQSSDDDVCLSKLRKKKKKKKKVKKQDTKVTKPGKPEKNLKNLPKDLVEMYTMTEEEMWEVRKEDVTSAEFQTMKYRCEDCVMGFLSLKLLNVHMGRHQPKGDTSCQCDVCKAYFLTRENLSSHRALHAAGLRCRRCGQRSGARRVMAQHVLTHDVAVHKCTDCDARFSSRSKLTYHRSVCSRERPQCDCCGKVFANKMTLKYHLKTNKTINTKEQKSKEKVYIPCKGCDKVFHSKKSYKAHSVIHDGLTYPCQICGKLFQWKRNLARHTRNHREKEAGELHECRECGKSFSSRDCYNNHMRLSKRHAHPDAYIHQCSFCGKKFATKWCMVDHVDWEHLKNIRYQCNICFKAFKTAKILVAHVKNIHEGAKRGEEEGEHLCEICGKSYKTEKRLKGHVWAMHTKRSTSKTFKCKLCPATFTWQTSIYKHMKMMHDKRNKPSRSAPLKKEESHPDMEFANRMQFYQHNINNIQNIAPTIPISY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01302724;
- 90% Identity
- -
- 80% Identity
- -