Basic Information

Insect: Acrobasis repandana
Gene Symbol: -
Assembly: GCA_963576875.1
Location: OY756227.1:4134210-4145667[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 1.8 1.5e+02 4.0 0.2 3 23 123 143 121 143 0.96

2 18 0.028 2.5 9.6 0.2 2 23 147 169 146 169 0.95

3 18 4.5 3.9e+02 2.7 3.5 3 23 407 428 406 428 0.96

4 18 0.07 6.1 8.4 0.6 1 21 436 456 436 457 0.94

5 18 0.0021 0.18 13.2 0.7 2 23 467 488 466 488 0.95

6 18 8.4 7.3e+02 1.9 0.3 1 22 504 525 504 527 0.73

7 18 2.8 2.4e+02 3.4 6.2 1 20 536 555 536 559 0.89

8 18 0.19 16 7.1 0.7 3 23 638 659 636 659 0.86

9 18 6 5.2e+02 2.3 1.6 1 23 664 687 664 687 0.80

10 18 5e-05 0.0044 18.3 2.0 1 23 693 715 693 715 0.97

11 18 9.8e-05 0.0086 17.4 1.4 1 23 722 744 722 744 0.98

12 18 0.0001 0.0091 17.3 2.3 1 23 749 771 749 771 0.96

13 18 0.0023 0.2 13.1 3.4 1 23 777 799 777 799 0.98

14 18 1.8e-06 0.00016 22.8 2.2 1 23 805 827 805 827 0.98

15 18 0.00032 0.027 15.8 1.6 2 23 834 855 834 855 0.98

16 18 0.00036 0.031 15.6 0.8 2 23 863 885 862 885 0.97

17 18 0.00011 0.0092 17.3 1.9 1 23 890 912 890 912 0.97

18 18 0.00099 0.086 14.2 2.9 1 23 918 941 918 941 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	1.8	1.5e+02	4.0	0.2	3	23	123	143	121	143	0.96
2	18	0.028	2.5	9.6	0.2	2	23	147	169	146	169	0.95
3	18	4.5	3.9e+02	2.7	3.5	3	23	407	428	406	428	0.96
4	18	0.07	6.1	8.4	0.6	1	21	436	456	436	457	0.94
5	18	0.0021	0.18	13.2	0.7	2	23	467	488	466	488	0.95
6	18	8.4	7.3e+02	1.9	0.3	1	22	504	525	504	527	0.73
7	18	2.8	2.4e+02	3.4	6.2	1	20	536	555	536	559	0.89
8	18	0.19	16	7.1	0.7	3	23	638	659	636	659	0.86
9	18	6	5.2e+02	2.3	1.6	1	23	664	687	664	687	0.80
10	18	5e-05	0.0044	18.3	2.0	1	23	693	715	693	715	0.97
11	18	9.8e-05	0.0086	17.4	1.4	1	23	722	744	722	744	0.98
12	18	0.0001	0.0091	17.3	2.3	1	23	749	771	749	771	0.96
13	18	0.0023	0.2	13.1	3.4	1	23	777	799	777	799	0.98
14	18	1.8e-06	0.00016	22.8	2.2	1	23	805	827	805	827	0.98
15	18	0.00032	0.027	15.8	1.6	2	23	834	855	834	855	0.98
16	18	0.00036	0.031	15.6	0.8	2	23	863	885	862	885	0.97
17	18	0.00011	0.0092	17.3	1.9	1	23	890	912	890	912	0.97
18	18	0.00099	0.086	14.2	2.9	1	23	918	941	918	941	0.98

Sequence Information

Coding Sequence: ATGTCCTCCAACGATTCTGATGATGAACCGCTTTCAATATTAGCAGCAACAAAGAAGAATAATCCTGAAAGTGGCACCGAACAATCACCAGTGAATTCGGATGCAGAGGATCATGAATATATaccaaagaagaaaaagaagaagaaagcgtCCTATTCCAAACCTAAACTTACTCTTACAATAAAACTTAAGAAGAGGGATAAACGGGAACATGTGCCCGCAGTTATAGAACGCCCGGCAGATGTATGGTTGTATATGAAAGATTTGAACCATAAAGGGCCATTTAGTTGCTTGTTGTGCTCAGAGTGGTTTATAAACCGGCCTAAGATGATAGTCCACTATGTAATGAACCATAAAAAAGACTTCTGTGGTATATGCAGaTACTTTGTGCCTGATCGAGAGAGTTGGCTGGAGCATCAGAAGTTTCACGTCCCATGGCCATGCTCTCAATGTGTTGAGAACTTTCAGACGGAAGAGGAACTGCGGCAGCACCTCAGCAGCTCCCATGAGCTCGTCCACTGCAGGCTATGTCACTTTCGAATGCCTGATGATGATCAATATACAACACATCTATTCCAAAAACACAATGTAACTAATGTGTCCAGTAAAGATGAGGAATTATTATGGGAATTAGAGTATGAAGGTGGGacaaaatttctttgtttacTCTGCTCTAAGTCCAACAACCCATCGTCTACTTTCTTCAGCCACTACATGGGATTTCACCACTTTACTCTGAAATgctttactaaaattatttctgGACGAGATCCTCCATTTGCTGTATTTGGGGCTCAAGTCAGCTCCCAGTTCATAGCTAATCAATTGAGAAGTCAAGACAGGTTTGGGTATGTCGAATTGGATAATAAACAAAGCGAAATCCCGGAAGTGGAAAGCAGTGACGCCCAAGCTCTGCTAAACATCCTCATACCGGAAATCAAGCAAGAAGTTGAAAGTGACATTGAAGAAAAGGATGACaaaaaagttgataaaaaagaaaatataaatgagGAAGTAGATGAAGAACGTAATGAACTTTTAAAGTCATATAGAGGTGATCAAGACTTTGATGTAACACTTGTAGAGTTGATTACAATGGAAAAAAGTTACGTTGAATATCTTAATCATACACTACTTGACATCAATGCCAATGTTGTACCAGAAGTGTCTGACATCGAGTATGAGTCTATAAAGGCAGAGTTTCCAGGAGATGTGTTGTGTGGATTATGTAATATGAGGCATAACACTCCACATTCATTCACAGCGCATATGAGTAAAATGCATTTGATGAAGTCTCTGCCAGTTTATTGCTGTAGAGTGTGCGCAACAACTTTCGAAAGCAAGAATGAGCTTGATTCTCACATAAATGAGGAACTGGGTGAATTTGACGATTTATGGATTTGTCAGTTTTGTGACAAGGAGTTTGACAACCGAGAGTCAACAAGACGGCACTTGAATGAGCATTATGAGGAATTAGAGTTCAACAATTGCTTCAGCCCGCATCTGGGCTTCAAGTGCAGGTATTGCCCCACATTGTTTTGGAATGAGCCAGACAGAGAGTCTCATCAAGTGCGGGTCCACTTTGATAGCAATAAGGAGGATTATTACAAATGTCACACTTGTTCGGAACTGTTCAGTGACAagGTATTCTTCGTTCATCACTTTTTCGAGAAACACCAAAGCACTGAGACCGAGCCGCCTACCCACCTACTGAAATGCTGCTGCTGCTGCCTGGTGCTCCCCAGCGTCGCCGACACTCGAAGTCACTTCAACGAGCACCATCCGGAAGCCAGGAAGATATTCTGCTCCCTCGACGCCTGCCTGTATAAGCCACTCAGCCATATTAAATCATTTAAGTTGCATCTTAAgCTTGTCCACTCGTCCGGCAACCGCGTGGACCGCAAGATCAACTGCACGGTGTGCGGGCGCGAGTTCGCGAGTTCGCGCGCGTGCAACACGCACACGGCGCAGGCGCACGGCCCGGGGAAGTACAAGTGTAAGCTGTGCGGAGAGCTCATGCATACGCAGGATGAGAgGAAACTCCACTACCTCCTCCGCCACCCCGGCCAGCACCCGTTTGAGTGCAAAGTGTGCGGCAAGTCGTTCCAGTACAAGTCGTCGCTGTACATGCACAAACAGGAGCACGCACCCAACAAGCAGAACTTCAAGTGCGAAGAGTGTGGGAAAACTTTCTTGAAAAAGGACTCTTTTCGCGAGCACCAGTTGATCCACGAAGGCCCGCGACACGCTTGCTCGTACTGTCCGATGCGTTTCGTCCAGCGCTCCAACATGTTACGTCACGAACGACGACACACGGGTGAACGACCTTACGCTTGTCAACATTGCCCTAGAACCTTTGCTGATAAGGGTGCCTGTACTTCACATACTAGGACCCATCTGAAAGAGACATCCTACTCCTGTCTCTATTGCGGCCAAACGTTCGTGCAAAAGTCGAAACTCACATACCACATTCGAAAGCACACAGGTGAAAATTTGGAGACGTGCAAGATATGCGGCAAGTTGTTCACGAGTGGTTGCGCGTTGCGCGAACACATGAAGATACACGACTCCAAGAAAGGCTCCATCAAGTGCCCGCTGTGCGATAAACGCTACCAAGACGAGCGCTACATGCTGCGGCACTTACGAACCAACCACACGCGAGCCGAGTACTTCTGTCCGCTCTGCAACAAAGCCTTCGCCACCTGCACCAGTCTCAAGTACCACGTCATCACGCACAGCGCCGTCAACACCTTCAAGTGTAAAATGTGCACGAAATCCTACGCCGTGAAGAAAACAATAATCAAGCACCTTCGCAAACGACACGGCTTGAGGGAGTCCGAAGTCAGTTTCAAAGAGTTCTACGAGCGGGTCGACCCCAGAGACTGCAGGTTGGGCCTCGACGAGGACGCCATGACAAAGATATTCGGACCCCCTAAGAAGAACAACGAAATGATACTCTCAGATCGTAATATCGACAGTAATTTTAAGGATGATGATGTAAATGAGGAAAGTCACGTGAGGGAAGATGATGAAGCGGAAAGTCATGCCAAGACGGAGAAGTCGCACGAGGTGTTGATAAAGAATGAAATGCCTGATGCTGAGCTGGAGCCTACTGACTTTGTTAGTATCAAGATTGAGCCTTATTCTGGTGAAATTGAGGATTAA
Protein Sequence: MSSNDSDDEPLSILAATKKNNPESGTEQSPVNSDAEDHEYIPKKKKKKKASYSKPKLTLTIKLKKRDKREHVPAVIERPADVWLYMKDLNHKGPFSCLLCSEWFINRPKMIVHYVMNHKKDFCGICRYFVPDRESWLEHQKFHVPWPCSQCVENFQTEEELRQHLSSSHELVHCRLCHFRMPDDDQYTTHLFQKHNVTNVSSKDEELLWELEYEGGTKFLCLLCSKSNNPSSTFFSHYMGFHHFTLKCFTKIISGRDPPFAVFGAQVSSQFIANQLRSQDRFGYVELDNKQSEIPEVESSDAQALLNILIPEIKQEVESDIEEKDDKKVDKKENINEEVDEERNELLKSYRGDQDFDVTLVELITMEKSYVEYLNHTLLDINANVVPEVSDIEYESIKAEFPGDVLCGLCNMRHNTPHSFTAHMSKMHLMKSLPVYCCRVCATTFESKNELDSHINEELGEFDDLWICQFCDKEFDNRESTRRHLNEHYEELEFNNCFSPHLGFKCRYCPTLFWNEPDRESHQVRVHFDSNKEDYYKCHTCSELFSDKVFFVHHFFEKHQSTETEPPTHLLKCCCCCLVLPSVADTRSHFNEHHPEARKIFCSLDACLYKPLSHIKSFKLHLKLVHSSGNRVDRKINCTVCGREFASSRACNTHTAQAHGPGKYKCKLCGELMHTQDERKLHYLLRHPGQHPFECKVCGKSFQYKSSLYMHKQEHAPNKQNFKCEECGKTFLKKDSFREHQLIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYACQHCPRTFADKGACTSHTRTHLKETSYSCLYCGQTFVQKSKLTYHIRKHTGENLETCKICGKLFTSGCALREHMKIHDSKKGSIKCPLCDKRYQDERYMLRHLRTNHTRAEYFCPLCNKAFATCTSLKYHVITHSAVNTFKCKMCTKSYAVKKTIIKHLRKRHGLRESEVSFKEFYERVDPRDCRLGLDEDAMTKIFGPPKKNNEMILSDRNIDSNFKDDDVNEESHVREDDEAESHAKTEKSHEVLIKNEMPDAELEPTDFVSIKIEPYSGEIED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00012345;
90% Identity: iTF_00012345;
80% Identity: -