Arep028205.1
Basic Information
- Insect
- Acrobasis repandana
- Gene Symbol
- -
- Assembly
- GCA_963576875.1
- Location
- OY756241.1:9940372-9944446[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 5.1 4.4e+02 2.6 0.2 1 16 76 91 76 93 0.84 2 17 0.2 18 7.0 0.2 1 19 208 226 208 229 0.92 3 17 0.0033 0.29 12.6 0.8 2 23 246 267 245 267 0.97 4 17 0.01 0.87 11.1 0.2 2 23 375 397 374 397 0.96 5 17 0.0024 0.21 13.0 4.4 1 23 403 426 403 426 0.97 6 17 0.0018 0.15 13.4 0.0 1 21 430 450 430 451 0.95 7 17 0.0056 0.49 11.9 0.6 1 23 459 482 459 482 0.97 8 17 0.011 0.93 11.0 1.5 1 23 487 510 487 510 0.96 9 17 0.00019 0.017 16.5 0.4 2 23 523 544 522 544 0.97 10 17 0.0016 0.14 13.6 1.0 1 23 551 573 551 573 0.98 11 17 0.00087 0.076 14.4 0.5 1 23 609 631 609 631 0.97 12 17 0.21 19 6.9 0.5 2 23 636 657 635 657 0.93 13 17 0.00063 0.055 14.9 0.6 2 23 673 695 672 695 0.96 14 17 0.0001 0.0091 17.3 3.9 1 23 701 723 701 723 0.99 15 17 4.5e-05 0.0039 18.5 2.2 2 23 730 751 730 751 0.97 16 17 0.015 1.3 10.5 0.9 1 23 757 780 757 780 0.93 17 17 1.4 1.2e+02 4.4 1.0 2 23 786 808 785 808 0.92
Sequence Information
- Coding Sequence
- atGGCAGAATTAGTACCAGAAGACAACATGGCTCATATGAAACGGAAGCTCTGGAACTTATGCCAGATGGAACGGTTCTGTTCTGTATGCCTGGAGAGCTCGGACAAACTGTGGCTGTTGGACACAGAGTTTGACATCACTGTCAACAGCCGGACACAGAAGAAGAGAGTCAAGGATTTGGTCTGCTATGTCTTTGGAGATTGGAAAGGTGTACTTGCCAGCATCTACATTTGCAGCTACTGCACTGAGAGAAGCATACAATCGTATCTCTTCATCAACAACGCAAGACAACTGTCCAAAATCATGACAAACTACATTGAAGATTTATCAACTAAAGTTGGCGATGTTGGCGATCAACTAGAAACAGACTATGATTATAATAACTCCAATGTTGTTATAGTACTTGATGAGAAAGAGgattatatcaataattatatagatattgGTACTTCAACTGAAATTACTGCTAAGGAATCAACCAGTTCAATAAATAATGTCAAAACCAAAGATTTTGAACAGACTACAAATATCAATAATAAGTTAGAGAAAGTGGAAGcagtaaaacaaaaattagaGAAAccattaaaaagaagaaagaaaaagttttcgaagaatgttatttataaatgtttaaaatgtaaaagggttTTGTCTACATTAAACACTTGGACAGAACATGAGAGTGTATGCAAATATCATAAGCGAATAGGAAACAAACTAAAGGGCCAACCATTGCAATGTAAAATTTGTTTAGAAACTTTGAAAACACAAAGATTGTTAACGCTTCATTATAAAGTCCATCAAATGGAACGATGCAAGATATGTCATTTTATAATGTCAGAAGGGGGATTACGAGATCATTTGAAACTAAACCACGCAGATGACATCCATATATGCGAATTTTGCGAACACATCTCCTACTCTGCTATAGCGTCAGAAATTCACATGAAGAAAAGACATGGCGACCCTCAATGCATAATGTGTTTGAAGAACTTTAAAGCTGCAGATTTACACAGTCATAAATGTAAATTTCGGTGTCTGGATTGCAAGGAAATGCCGTGTATTCATCACAAATATCTAGTACATTACAGACAACAAGTATTGAATGAATCTAGTAAGATACAATGCTTGGATTGTGACTATGTTTGTCCGAGACGAGAAGCTTTGCTCGGACATGTAAATCGTGAGCATTTGGACCATCATCCATTCACCTGCGCTCACTGCTCTCAACAATTCTACTCAAAAGTCACTTTGAGAAACCATTTGAACCGTTTTCATAGAGATAACTTTGTATGCGAATTTTGCGATGAAGATTTCAAAGTGCAGGCCACTTTGGAAGAGCATATCAAAATTTGCAAATGGATCAAAAGGCATTTTAAATGCGATATGTGTGCGTCGTCTTTCGATACGGCAGAAGAATTGTCAAATCATAAGAATTCTAAACACAATGAAGAGAATTTCCCTTGCAATTTATGTAACAGGAAATTCTTTTCGGTTCTGAAGCTAAAAGAGCATATGTTTAGGATACACAGTGGCATTCAGATAAAAAGAAAGAGGAGTAATTTAGAATGTACGATATGCGACATCAAATTCGATGACAGAAAAGAATTTTCTCAACATATTTCTACACACGACTCGAATACTACAAAATTCCCTTGCCGAACTTGCAATAAAGATTTCGAcgatataaaaaagttatacgcTCACACACGCATGCATGCTGATGACGTAATTAAATGCGCTGATTGCAATAAACTAATAACAACAGCATACTTCCCTCAACACATGATATTCTGTGGAGCGAATAGGAATGAAAACAATAACTTCTCTTGCGAAACATGCGGTAAAACCTTCCAGACTGATGCAGTATTGAAAATCCATAGACAATTGCATCTAGAGCCCATAACCTGTCAGATTTGCGGCAAACTAGTCAAACCATTATATTTAAAGAGACATTTGAAATACACGCACGGTCAGAAGAAAGATAAGAGACCCAAAAAGAATCTTAAACTGATCAAATGCGATTGGTGCGGACATATGGTCACTCGGAAAGGAGAACTAGAATCCCATGTGAATAGATTCCATCTAAAAATCAAGCCATATGAATGTAATACTTGTAAGAAGACATTTTGCGGGAAAGAGCGTTTGAGAGAACATATACAAACGCATTCAACAGAACATACAAGATATTGTACAGTATGTGGCAAAAAATTTGCGAACCAAGTGTGTTTGAAAATGCATCTAAGGCTACATTCAGGGGTAGCTCCGTACACTTGTGATATATGTGGGGGAAAATTCAGAACTTCAAGCATAATGAATACGcataaaattaagaaacataCAGAAAAGACTATATCTTGTCCGCTGTGCgacaatatgttttatttagtgAGGGAAATGAGACATCATTTTAAGAATGTTCATTGGAAGAATAAGGGACAAAAGTTCGATCCAAGGGATGTGAAGGAATTGGGCAAAGAATTTTATCACTTGTTTGAAGATCGAAGGATACCGAAAGTTAGCGAAAATGACGTTGTTTTCTCGTAA
- Protein Sequence
- MAELVPEDNMAHMKRKLWNLCQMERFCSVCLESSDKLWLLDTEFDITVNSRTQKKRVKDLVCYVFGDWKGVLASIYICSYCTERSIQSYLFINNARQLSKIMTNYIEDLSTKVGDVGDQLETDYDYNNSNVVIVLDEKEDYINNYIDIGTSTEITAKESTSSINNVKTKDFEQTTNINNKLEKVEAVKQKLEKPLKRRKKKFSKNVIYKCLKCKRVLSTLNTWTEHESVCKYHKRIGNKLKGQPLQCKICLETLKTQRLLTLHYKVHQMERCKICHFIMSEGGLRDHLKLNHADDIHICEFCEHISYSAIASEIHMKKRHGDPQCIMCLKNFKAADLHSHKCKFRCLDCKEMPCIHHKYLVHYRQQVLNESSKIQCLDCDYVCPRREALLGHVNREHLDHHPFTCAHCSQQFYSKVTLRNHLNRFHRDNFVCEFCDEDFKVQATLEEHIKICKWIKRHFKCDMCASSFDTAEELSNHKNSKHNEENFPCNLCNRKFFSVLKLKEHMFRIHSGIQIKRKRSNLECTICDIKFDDRKEFSQHISTHDSNTTKFPCRTCNKDFDDIKKLYAHTRMHADDVIKCADCNKLITTAYFPQHMIFCGANRNENNNFSCETCGKTFQTDAVLKIHRQLHLEPITCQICGKLVKPLYLKRHLKYTHGQKKDKRPKKNLKLIKCDWCGHMVTRKGELESHVNRFHLKIKPYECNTCKKTFCGKERLREHIQTHSTEHTRYCTVCGKKFANQVCLKMHLRLHSGVAPYTCDICGGKFRTSSIMNTHKIKKHTEKTISCPLCDNMFYLVREMRHHFKNVHWKNKGQKFDPRDVKELGKEFYHLFEDRRIPKVSENDVVFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00012336;
- 90% Identity
- -
- 80% Identity
- -