Basic Information

Insect: Acrobasis repandana
Gene Symbol: -
Assembly: GCA_963576875.1
Location: OY756240.1:11899022-11904680[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.043 3.7 9.1 5.0 1 23 252 273 252 273 0.98

2 10 2.3 2e+02 3.6 2.3 1 16 279 291 279 298 0.64

3 10 0.0021 0.18 13.2 8.5 1 23 306 328 306 328 0.98

4 10 4.7e-07 4.1e-05 24.7 3.0 1 23 334 356 334 356 0.99

5 10 0.003 0.26 12.7 7.8 1 23 362 384 362 384 0.94

6 10 0.00025 0.022 16.1 4.8 1 23 390 412 390 412 0.99

7 10 8.3e-05 0.0072 17.6 2.6 1 23 418 440 418 440 0.99

8 10 4.8e-05 0.0042 18.4 0.4 1 23 446 468 446 468 0.99

9 10 2.5e-05 0.0022 19.3 2.5 1 23 475 497 475 497 0.98

10 10 4.8e-05 0.0042 18.4 2.5 3 23 505 525 503 525 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.043	3.7	9.1	5.0	1	23	252	273	252	273	0.98
2	10	2.3	2e+02	3.6	2.3	1	16	279	291	279	298	0.64
3	10	0.0021	0.18	13.2	8.5	1	23	306	328	306	328	0.98
4	10	4.7e-07	4.1e-05	24.7	3.0	1	23	334	356	334	356	0.99
5	10	0.003	0.26	12.7	7.8	1	23	362	384	362	384	0.94
6	10	0.00025	0.022	16.1	4.8	1	23	390	412	390	412	0.99
7	10	8.3e-05	0.0072	17.6	2.6	1	23	418	440	418	440	0.99
8	10	4.8e-05	0.0042	18.4	0.4	1	23	446	468	446	468	0.99
9	10	2.5e-05	0.0022	19.3	2.5	1	23	475	497	475	497	0.98
10	10	4.8e-05	0.0042	18.4	2.5	3	23	505	525	503	525	0.97

Sequence Information

Coding Sequence: ATGTCTCCAAGCATTGGCGTATGCCGGATCTGCCTCGCAGTGGACGTGGCTATGTGCGAAATAGCTGGCACTCCTCTGCAGCTCGTCTTCGAATCCCTCTCAAATAACTTtCTGCACTCAGCGGACCGAAGGCCCGTGGAAGCTTGCTACATGTGCTGTGCCCGCCTGAAGAAGACACACAAGTTGATGGTGGCCGTGGCCAGAGCAGAGCATGTGTTGACACAGATTCTGGCGAGATCGGCCGAGGTTACAAAGACATCAGTATCCTCAGTCGACCGGCTGGCTATGGGTCTGTGTCCATCGCTAGTGCTCTGCCAACCTGAATGCGTGGACATTCTTCCCCCCACCTGCGTAGTAGAAGCCGTCCCATCTCCACACACAATAAATCCACTCCCACTCAGCGAGATGGTGCTGAAGGTAGAAGAGATCAAGACGGAGGCGAATATACATGATGAGGAAATAGAGATCGAGCTGGGAGAATTAGTAGGTAGGGATATATATAACGGCTTCATCGTACTGCGACATATGCATTGCTCCATTATCGTGGCCTGGCCGCTCTGCAATAATTTGCTTTCTGCAATAGATCCGCGGGAAGACGACAGCGGCAAGTGGGAGCCGGATGGTGACACTGCGCTGAGGGACAGAGGagaaacggacggacagacaaacaccGGTGGAGGTGAAGCCGAGAAACGAATATCAGCTGAAGAAAGTTCAACAAACACGAAACGGAAACTCGGCCCTGAATCGAGATTCGAATGCGACGTCTGCCACCGTTTCTTCACGGAGAAACGTCTACACGCACACTTACAAACACACACGACCGATAACCCACACCAATGTCACATCTGTCTGCGTTACTTCACCAACTTACCTCGACACATCGAGAAACACGAGAAACAAAAGAATGTATATTTTCATTGTCACATTTGCAgttgtaaatttaataaaaaagcttCATTAAGAAGTCATTTAAGAGtccacactggtgagaaaccgtTTGAGTGTAATTATTGTAAGAGGAGATTCGCTCAGAAGAACACGCTGAGAAATCATATAAGGACGCACACAGGTGAGAAACCTTACAAATGTCACGTGTGCGATCGTCAGTTCACTAATTCGTGTAATTTGATTGAGCATTGTTCTACACACACCGACGAGAAACTATTTAAATGCAAAGTTTGTAGGAAAGAGTTTAAATTGAGAAGTAGCTATCGATATCACTTAAAAACCCACACAGGCGAAAAACCGTACGAATGTGATGTTTGTCAAAGTAGGTTTCGAATTTCGTCTCACTTGACGAGGCATTTGAGCACGCACAGCACTGAGAAACCTTACCAATGTGACATCTGTCAACGCGGGTTTGTCATAAAGTCTCGGTTGAATGATCATATTAAAATGCATATGGGTGTGAGAGAGAGGTTCACGTGTACCGTGTGTAAGCGTCAGTTCAATTATAAAGAAACTTTGAAATTGCATTTGAGAATTCACACAGGCGAGAAACCTTATGGATGTGATATGTGTAATCGGAGGTTTAGTCAAAATAAGTATTTGAAGAGTCATTATAAAAGTCACGCAGGTGAGAAAccgtattaa
Protein Sequence: MSPSIGVCRICLAVDVAMCEIAGTPLQLVFESLSNNFLHSADRRPVEACYMCCARLKKTHKLMVAVARAEHVLTQILARSAEVTKTSVSSVDRLAMGLCPSLVLCQPECVDILPPTCVVEAVPSPHTINPLPLSEMVLKVEEIKTEANIHDEEIEIELGELVGRDIYNGFIVLRHMHCSIIVAWPLCNNLLSAIDPREDDSGKWEPDGDTALRDRGETDGQTNTGGGEAEKRISAEESSTNTKRKLGPESRFECDVCHRFFTEKRLHAHLQTHTTDNPHQCHICLRYFTNLPRHIEKHEKQKNVYFHCHICSCKFNKKASLRSHLRVHTGEKPFECNYCKRRFAQKNTLRNHIRTHTGEKPYKCHVCDRQFTNSCNLIEHCSTHTDEKLFKCKVCRKEFKLRSSYRYHLKTHTGEKPYECDVCQSRFRISSHLTRHLSTHSTEKPYQCDICQRGFVIKSRLNDHIKMHMGVRERFTCTVCKRQFNYKETLKLHLRIHTGEKPYGCDMCNRRFSQNKYLKSHYKSHAGEKPY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -