Arep028246.1
Basic Information
- Insect
- Acrobasis repandana
- Gene Symbol
- zfy1
- Assembly
- GCA_963576875.1
- Location
- OY756241.1:11332059-11335365[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.58 51 5.5 8.7 1 23 183 206 183 206 0.96 2 18 4.9e-05 0.0043 18.3 1.0 1 23 215 238 215 238 0.96 3 18 0.044 3.8 9.0 0.6 2 23 251 273 251 273 0.97 4 18 0.00012 0.011 17.1 1.0 1 23 282 305 282 305 0.97 5 18 0.00018 0.016 16.5 1.4 1 23 317 340 317 340 0.96 6 18 0.00016 0.014 16.7 0.7 2 23 364 386 363 386 0.97 7 18 0.0028 0.25 12.8 1.2 2 23 396 418 395 418 0.96 8 18 0.11 9.3 7.8 1.9 3 20 426 443 424 448 0.88 9 18 7e-05 0.0061 17.9 0.1 2 23 450 472 450 472 0.96 10 18 0.095 8.3 8.0 1.3 3 23 482 503 481 503 0.96 11 18 0.026 2.3 9.8 2.6 1 23 508 531 508 531 0.91 12 18 0.0021 0.19 13.2 0.8 2 23 542 564 541 564 0.94 13 18 0.017 1.4 10.4 4.1 1 23 588 611 588 612 0.93 14 18 0.33 29 6.3 0.1 2 23 618 639 617 639 0.92 15 18 0.027 2.4 9.7 2.7 2 23 644 665 644 665 0.98 16 18 5 4.3e+02 2.6 2.5 3 23 673 695 671 695 0.91 17 18 0.04 3.5 9.2 0.2 1 23 731 753 731 753 0.97 18 18 0.22 19 6.8 2.0 1 23 759 782 759 782 0.96
Sequence Information
- Coding Sequence
- ATGTCAATAAAACAAGAGGacgtcaaaatcaaaatagaaAATGACATCATAATCAAAGAAGAGAGGAAAGACCCGACAACATTCTTGCCAGAAGAGCCGATGACGTACGAAatcaaaaagaagaagaagaagaaaaagaaacggAATAAAGAGCAGGACCCGTTCAAAGATATTGCGATGAAGAATGATGAGCCCACACTTGAGATGCAGCTAGACCCAGAGGTTAATATAAAAGTGGAGAATATTGAAGTAGAGTTAGATTTTAATGATTTTGCCGACAATGGTGGTTTATTGGTGGAGGCGCAGCAAAGTGAGGAGAGCCAAGAGCCAGCTGTCAAAATCGAGCCTCAAAATCACGAGGCAGTCCTACTCACCTTCGAAAGCGTAGTCAACAAAACCCTACTTGACTACAGCCAAAACAACGAATATAACGGCATAGAAGACATTAAACCAGACGTAGGATATCAAGAGGATCATGTTTTCAAGCAGGAAGATGATACAGTATTCGGATATAGTCAGGGTATCGCTATGGAAACCGCACCAACCCACATGTGCAAAGTCTGCCATCTAGTCTTTCAATCGCACAAAACTATGCGGATGCATCAGAAAAGAAAGCACAAAGCGTATAGGAAATACTTCCAACACATTTGTGATTATTGTGGCATGTCGTACGAACAAAAGAATAGTCTAGTCGCTCATATTAAGAGGAAACATGGCCCGGATGCAACACCGGACGACCGGGAAGAAAGGACTTGTGATGTATGTGCTCTAGTCTTCAAAGGGATAACCCGGTTAAGAATGCACATGAGAAGAAAACACGGATCGTTCGAAGACTCTTTTAAATATAGCTGCAAAGAATGCGGACTTACGTATGATAAACAAAGAAGTTTGGTAGTCCATCAGCAACGCAAACATTCACAGATCCCAAAGCCGGTTTTAAACCAATGGTTCAACTGTCCGTTCTGTcccaaaatatttactaaaagaGAAACGTACGCTCGACATGTACAAAGGAAACATAAGGTAGCTGACGAGGAAGATGGCAAAGaagattttgtaaatataaagaACGAAAAAACTGGAGAAATCACTTGTAAAGAATGTCCTTTAGTTTTTTCGTCGATCAACTTTTTGAAGTTACATATGCGAAGGAAACATAACGCTCTGAAAGAGGATTTTAGACTTAAATGTAGGGTTTGTAATTTATCGTACGATAAGATAGAAAGCCTCAAAAGGCATGTAAGGCGGAAACATGGGCAGGGTGACTTTTCGCATTGCGAAGTGTGCAATAAACAATTTGATAACAGGGAGGCCTATTTGAACCACTCACATGTGAAAGCGCACGCGGAATGCTCAATTTGCGGTCTGATATTCGCTTCGGAAGGCAATTTAGGCAAACATATGCGTTTAACGCACAAAATAGACGCACCCAAACACGTGTTTTGCAGCCTGTGCAAAGATGGGTTCCAAGATAAACGTCAATTGAAGTCGCATTTAATGAAAGTACATTTGAAAGTGTcgtacacgtgtattttttgtaaaaaagtcTTCAAAGCGAAGGAGAGTTATAGGAGGCATATTTTGTTTAAGCATCCGGAGAATCCAGTAAACAACGAGGGTCAAAAGTGTGAGCAATGTTCAGCTACGTTTCCGGATGAGTTTGAGTTGTGTCGGCATATCAATGATGAACATCGGAGTCAAGATAAAGAAACTAACGATTTAGTTTTAATCAAAAAGGAGGATGATGGTATTAAAGACTCGTTCCATTGCATGAAATGTCCAGAAACATATCCTACGTGGGAGCAATTGAGGTTACATCACGAGCAAAATCACCATTTGGCCGAGGAAACTCAATGTCAGATGTGCGGTGAAATGGTTCCAGGGAACGCTCTGAAGAAACACATCAGAAGCGCTCACGTCGAAGAGCCACAGTGTAAATACTGTGAGTTCAAAACGAATAACCGTACAAGTATGACGCAGCATATTCTAAGGCACAAAAACGTAACAACTCTACACTGTGATTATACAGGTTGCAGATATAAAACTTACTACGAAGGAGCTATGcaaaaacataaaagaaaacATGCCGAGATTGGAGTAAAACTTCAGTGTACGAAGTGCCCGTTTCAAacgatgaataaatatatattgaaatatcaCGAAGAAGCTCATATGACTGGGAAAAAGAGGTATACGTGTGACCAATGTGAGTACGCGACTATATTGCCAGCGAATTTGGTGCAACACAAATATAAGCATTCCGCAGAAAAGAGGTTTAAGTGTGAGGTTTGTCCGTTTGCAACTAAGTACAATACTTCTTTGCGATTTCATGTGAAGAAAAAACACTGTGATCTCCCGTCGCTTagttga
- Protein Sequence
- MSIKQEDVKIKIENDIIIKEERKDPTTFLPEEPMTYEIKKKKKKKKKRNKEQDPFKDIAMKNDEPTLEMQLDPEVNIKVENIEVELDFNDFADNGGLLVEAQQSEESQEPAVKIEPQNHEAVLLTFESVVNKTLLDYSQNNEYNGIEDIKPDVGYQEDHVFKQEDDTVFGYSQGIAMETAPTHMCKVCHLVFQSHKTMRMHQKRKHKAYRKYFQHICDYCGMSYEQKNSLVAHIKRKHGPDATPDDREERTCDVCALVFKGITRLRMHMRRKHGSFEDSFKYSCKECGLTYDKQRSLVVHQQRKHSQIPKPVLNQWFNCPFCPKIFTKRETYARHVQRKHKVADEEDGKEDFVNIKNEKTGEITCKECPLVFSSINFLKLHMRRKHNALKEDFRLKCRVCNLSYDKIESLKRHVRRKHGQGDFSHCEVCNKQFDNREAYLNHSHVKAHAECSICGLIFASEGNLGKHMRLTHKIDAPKHVFCSLCKDGFQDKRQLKSHLMKVHLKVSYTCIFCKKVFKAKESYRRHILFKHPENPVNNEGQKCEQCSATFPDEFELCRHINDEHRSQDKETNDLVLIKKEDDGIKDSFHCMKCPETYPTWEQLRLHHEQNHHLAEETQCQMCGEMVPGNALKKHIRSAHVEEPQCKYCEFKTNNRTSMTQHILRHKNVTTLHCDYTGCRYKTYYEGAMQKHKRKHAEIGVKLQCTKCPFQTMNKYILKYHEEAHMTGKKRYTCDQCEYATILPANLVQHKYKHSAEKRFKCEVCPFATKYNTSLRFHVKKKHCDLPSLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00073068;
- 90% Identity
- iTF_00012290;
- 80% Identity
- -