Basic Information

Insect: Acrobasis repandana
Gene Symbol: -
Assembly: GCA_963576875.1
Location: OY756243.1:5192051-5221605[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.00028 0.024 16.0 1.6 2 23 347 368 346 368 0.97

2 9 9e-07 7.8e-05 23.8 1.1 1 23 374 396 374 396 0.98

3 9 1.4e-05 0.0012 20.0 2.2 1 23 402 424 402 424 0.99

4 9 7.3e-06 0.00063 21.0 4.1 1 23 430 452 430 452 0.98

5 9 0.0034 0.3 12.5 0.9 1 23 457 479 457 479 0.98

6 9 0.00099 0.087 14.2 3.1 1 23 485 507 485 507 0.98

7 9 1.2e-05 0.001 20.3 3.2 3 23 545 565 544 565 0.98

8 9 0.00063 0.055 14.8 4.6 5 23 575 593 572 593 0.95

9 9 0.00012 0.01 17.2 2.5 2 23 637 657 636 657 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.00028	0.024	16.0	1.6	2	23	347	368	346	368	0.97
2	9	9e-07	7.8e-05	23.8	1.1	1	23	374	396	374	396	0.98
3	9	1.4e-05	0.0012	20.0	2.2	1	23	402	424	402	424	0.99
4	9	7.3e-06	0.00063	21.0	4.1	1	23	430	452	430	452	0.98
5	9	0.0034	0.3	12.5	0.9	1	23	457	479	457	479	0.98
6	9	0.00099	0.087	14.2	3.1	1	23	485	507	485	507	0.98
7	9	1.2e-05	0.001	20.3	3.2	3	23	545	565	544	565	0.98
8	9	0.00063	0.055	14.8	4.6	5	23	575	593	572	593	0.95
9	9	0.00012	0.01	17.2	2.5	2	23	637	657	636	657	0.98

Sequence Information

Coding Sequence: ATGAGTTATTATTCAATTTATCGTTGGTGTGCTGTCCCTGAATGCAAGAATACTAGTGTAAAAACACCGGACAAATTGTGGATTCGAGTGCCTACTGATATAAATATGAGAAAAACTTGGTTCGAAGTTGGGGGAAGGGATCCCGAAAAATTATCTGAAAAAACTACTTTGTACTTTTGTGAAGAtcattttgatTTGGAATATGATATGGAAAACTATAGACAGTATAAGATAATGggttcagtaaaaaaaattcgaatGAACCCACATTGCATACCCTCCAGATTTGATTGTAAAAAACATAAGTCTGCTTCAAATAAAACTCATTTTGCTCCAATGCAAAATCCTATAGAAGGAAATAATGTCAAAGCATCATCAGCCTGCATTGAAgGTCCCCAATCTCAACCCAtgaatgttgacgtcaaatgcGAGTTTGGACCACATTCAGATGGCAACGAGCCATCAACGATTATAAGTATGGAGCAACGGCCCATAGTTAAGACGGAGCCAGTAGAAGAAgAGTGTACACATACAACAGTGGTCACGTTGGAGATCAAACGCGAGTATGAGTCAGACCCAGAGTACGAGGTTCCACTGATAGACCCGTTGCAGCCAGACAAAGTGAAGGCAGAGCCCGTGGAAGATGCCCAAGAAGGAAGCTCACGAATGCCGTATGTGACCACAAGCGTTAAATGCGAGTACGAATCGGATTCTGACGACGACGTTCCCTTGAAGAAGATTTCAAAAGATACCCAGCCGGCCAAGGGGGAGCATTCCGAAGATTCCCAGCCCCCAAGCTCAACCTCCAAAGATGAGGACGTGAAATGCAAGATCGACGTGGACTCAGAGTATGACGAGGAGCTCAGAAAGATCGACCTTCAGAAGCGGAAGGCGGTCGCCGAGCTAGGAGATTCCAAAGGTGGCGCTGCTCGCAAGCCTGCGCAGAGAAAGCGGAGGCAAGCCGCGGGCGGCGCTACTGATGACACGCCACCGCTGCCCGGAGAAGAACCAGCGCCAAAGTCTAGCAAAAGAATCGTCGAATGCCATATTTGTCACAAACCATTCAATGGCATCAATTATTTAAAGATACACTTAATGACGCACACGGGCGAGAAACCCTACGAATGCAATATCTGTCAAAGACGCTTCGCTCAAACCTCTAATTTAAAAACCCATTTGGAAACCCACGCCGACAAAAAACCGTTTGAATGTGAGATCTGTCACGGCCGGTTTACCCGAAAGCCGTACTTGAAAATACATTTGAGAACCCACACGGGCGAGAAACCATTTGAATGTAACATTTGTCACAGTCGGTTCACTCAGAACATGAATTTGCAACGGCATTTGAAAACGCACACTGAGAAACCTTATGAATGTCATGTTTGTCAAAGTAGATATTCGTTGGAGAGTGATTTAGAAGCACATTTCAAAGTGCACACTGAGGAGAAACCATTCGAGTGTAGCGTTTGTCAAAGCCGGTTTACCACAAAGAACTATTTACGAATGCATTCAAAAACTCACGGTGGCGCGACTTGGAAGCCAGGATCACTGAGACGGAAGCAGGCTGAAACAGAGTCGGGCAGCGCACCAACCAAGTCTCGAAGACGAGAAGCCAACAAAATACAAGTCGATTGCGATATTTGCCACAAGACGTTCAAAGGCTTCGATAATTTAAAGAAACATTTGAACACCCATGAGCCCGTGAAACCGTTTGGATGTATCATCTGCCACCGTCGGTTTACACAACAGCATAGCTTAAAGAATCACTTAAGGATACATACCGGGGAGAAACAAcatgaatGTGGCGCTGGTCAGAAAACTGATGATGAGAAGGAAGCGCAAAGAAGAAGCTCCAACACGACGCTCCTCGTTCGTCGAGATCCTAACCCAAAATCTAGCAAGGAAAAACAGTGCAATATATGTCACAAATCTTTTGCACCGGCCTATCTGAAAAAACATTTAAGAACACATACCGGCGAGAAACCATTCGAATGCACGCTATGTCATGTGGCGCCGATAAGAAGACAGGGCCAAAGAAACGGACGCAAGCCGAGAGAAAAAAGAACGAGAAACCGAATGAAACTGCAAAGGATTCCGACGAAAGATCGTTCGAATGTTGCATTTGTCGAAACAAGTTTAAGCGAAACTGCGATCTGCAAAGACATGTTCGAACACACGCCGAGAAATCGTTCGAATGTAGCGTTTGCCAAGCCAGATTTCCCGCTAAACACAGGTTAA
Protein Sequence: MSYYSIYRWCAVPECKNTSVKTPDKLWIRVPTDINMRKTWFEVGGRDPEKLSEKTTLYFCEDHFDLEYDMENYRQYKIMGSVKKIRMNPHCIPSRFDCKKHKSASNKTHFAPMQNPIEGNNVKASSACIEGPQSQPMNVDVKCEFGPHSDGNEPSTIISMEQRPIVKTEPVEEECTHTTVVTLEIKREYESDPEYEVPLIDPLQPDKVKAEPVEDAQEGSSRMPYVTTSVKCEYESDSDDDVPLKKISKDTQPAKGEHSEDSQPPSSTSKDEDVKCKIDVDSEYDEELRKIDLQKRKAVAELGDSKGGAARKPAQRKRRQAAGGATDDTPPLPGEEPAPKSSKRIVECHICHKPFNGINYLKIHLMTHTGEKPYECNICQRRFAQTSNLKTHLETHADKKPFECEICHGRFTRKPYLKIHLRTHTGEKPFECNICHSRFTQNMNLQRHLKTHTEKPYECHVCQSRYSLESDLEAHFKVHTEEKPFECSVCQSRFTTKNYLRMHSKTHGGATWKPGSLRRKQAETESGSAPTKSRRREANKIQVDCDICHKTFKGFDNLKKHLNTHEPVKPFGCIICHRRFTQQHSLKNHLRIHTGEKQHECGAGQKTDDEKEAQRRSSNTTLLVRRDPNPKSSKEKQCNICHKSFAPAYLKKHLRTHTGEKPFECTLCHVAPIRRQGQRNGRKPREKRTRNRMKLQRIPTKDRSNVAFVETSLSETAICKDMFEHTPRNRSNVAFAKPDFPLNTG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -