Arep026964.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Acrobasis repandana
Gene Symbol
-
Assembly
GCA_963576875.1
Location
OY756240.1:6716965-6729826[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00065 0.056 14.8 0.7 1 23 186 208 186 208 0.98
2 16 0.00072 0.062 14.7 0.8 2 23 279 300 278 300 0.97
3 16 4.1e-05 0.0036 18.6 4.2 1 23 304 326 304 326 0.98
4 16 2e-06 0.00018 22.7 1.5 1 23 331 354 331 354 0.97
5 16 0.46 40 5.9 0.8 1 21 361 381 361 384 0.81
6 16 0.00068 0.06 14.7 0.6 1 23 391 414 391 414 0.97
7 16 0.0042 0.37 12.3 9.9 1 23 420 442 420 442 0.98
8 16 7.5e-06 0.00065 20.9 1.8 1 23 448 470 448 470 0.99
9 16 0.00044 0.038 15.3 0.4 1 21 477 497 477 498 0.93
10 16 0.66 58 5.4 3.8 1 23 642 664 642 664 0.97
11 16 0.0036 0.31 12.5 0.3 1 23 668 690 668 690 0.97
12 16 0.036 3.2 9.3 1.4 1 23 695 718 695 718 0.93
13 16 0.61 53 5.5 3.8 1 23 724 747 724 747 0.95
14 16 0.0072 0.63 11.5 0.1 3 23 756 777 754 777 0.95
15 16 0.83 72 5.0 3.5 1 23 783 805 783 805 0.98
16 16 5.2e-05 0.0045 18.3 0.8 1 23 811 833 811 833 0.94

Sequence Information

Coding Sequence
ATGAACCAAGATGACTTTGGAGCTGATAATTTAAACTTAAACTGTAAAGAGGAAATATTAAGCGATGAAGAAGAATATATAGTACCAGAACTGCTCAACACTGAACAGGAAGAGGATAGTAAGGATTTTGAACCCAAGCCTGAGGTTGAGTATGGAGAAATCGAGTTCCTGGAAGAGGATGCGGAGATTGTGGAGCAATCAGTTAGCACACTAGACAGAGAGACGGACTCGGACGGTGCTCCGACACGGAAATTGCcgcgtaagaaaaaaaaaagtgaacgGACTGGCTACAGGCAGTACTCACAAGCGGACCTAAAGAAATGCGTCGAGCTCCTCCAGCAGAGTGAGGGTCTGTCGCAGTCTCAAGCTGCCAGGATGTTCAATATACCAACGAAGACCGTCAACGCTAAGATGCGCAGCTTGACGAAGACCAATGATGACGAGAATAAAACCACAGAGGGCCAGAAGACGGAAATAACGAAACACCGGGACAATATCCAAACGATCCTAAAGAACACCAACGCCACGCCCATCAAGGGACACCGCGGCATCGGATACATGTGCAACTTCTGCCCAAAACAATACCCCAAAGCGGCAGATCTTAAAAGTCACACATTTACACACAAAGATATTTGGAAAAAATTTAAAGTCCCCATAGTTTTTGCTTACTCTGTCAAACTTGACATCACTGGTTTAAAATGCAAAATCTGTCACTCAGATATTGATGATTTGAGTTTAGAAGATGCTATGGAGCACCTAAAATCACATAAAAAGATAGTACACACGGATATAAAGAATCATATAATACCATTCAAATTTGACACCTTAGCGTTACAATGCGTCAAATGTGACGAAAACTTTTCGTATTTCAAACTTCTGTCAGCACATATGAGCAAACATTATCCTAATTATAGGTGTAAAGAATGCGGGAAAGGATTCATTAACAAACACAGTCGAAGAACGCACATGTCTAGACATAATATAGGAGAATTCTCATGCAGAATATGCGACAAAACATTTTCAACGAAATCAAAAATGATGGACCACCAACGAGTGGTTCACATACTACAAAACAAGACGCATAGATGTAGTTATTGTAGTGAAAGGTTCGTCGATGTAGTGCAGAAAAGCAATCACGAAGTGTCCGCACACGGCGCGGAGGCGAAAAAGTTTATATGTCAATATTGTAACAAGATTTATGACAGTCAAAGATCTGTGACGGCGCACGTGAAAAGGATACACTTGATGCTAAAACCCCACAAGTGTCATTTCTGCGAGAAGTGTTTCTTCAAAAAATCTTCGCTGATGAACCATCTGGTGACTCATACCGGGGAGAAGAAGTATGAATGTAGTTTATGTTCGAAGACTTTTGGCACTAGAAGCACATTGGTGAAGCACCGCCAGACGCATGACCATGTTTCTGAGGAGTTTTTGTGTTTCGATTGTGGAAAGACTTTTCCGCTGCTCAGTCAGTTCCAGTCGCATTTGAGAGAGGGCAGTCAGGaTTCCCCACTCACCGAGGAGAAGCAGGAGAAACGCGAGAAAATCGAGTTGCAATACAAATTCGTGGAAGAAATCCAGACAATCCTACAAGTCACTAACAGTGTACCTTTCAAAGTGAAGTCTACTTACCTCTACTGCGCCTACTGCTATCTCAGTGGCTCCAGGTTCGAAGATCCAGACGAGTTGAGGCTCCACACCTTCGAGAAACACCAAGATGATAGGACAGCAGCTATAGAAGGAATGCTACGACCGGTCCATTTGAACGAAATATTAAGAATAGATGTCACCAACTTGTCCTGCATGGTTTGTGTGACAAGAATCGCAGGCTGGAATGAAATGTTCCAGCATTTGTTTGATATACATAACTTGGAGTTCGATCAAGCATATACAAGACTTATCCCATATAAACTAAGCCACAATTACCCCTGTGCATTGTGCAACGAGTCGCACACACACTTTCATAATTTGGACTCTCACATGAATGCACATTACAATAATCATGTTTGCCCCGAGTGTGGTGATACCTTTATTACTGTGTCTAGAATTAAAAAGCACATGGATATTCACAGCACGGGAACATTCCCTTGCCaacggtgcaataaagtgttcacattaaaaaaatatagagacaAGCACACAGCGATGGTACACGAACAAGCCAAAATGTATAAATGCTTTTATTGCCCCGAAGGGTACAGTACGGAGTACGGGAAGCATTTACATGTAAGGGAATGCCACAAAGAGAAGCTGAAGTTTATAAACTGTGAGATATGTGGGAAAGTGTTCGATTGGAGACCGTATTACTTGGCGCATTTGAGGAAGACCCATTACAAAGTGAGGAGATATCAGTGTACGTTTTGTATGAAGTGGTTCGGGGATAATCATAATTATAAGCTGCATGTACAAAGGCATACCGGGGAGGGGAAGTTTTACTGTGATGTGTGTAACAAGAACTTTGTGAGGCAGAATGAGTTGAGGCAACACAAGGCAGGGCACGAGAAGACACGGAATGTAAAGGGTAAGAAAGGTAAAAAGTGA
Protein Sequence
MNQDDFGADNLNLNCKEEILSDEEEYIVPELLNTEQEEDSKDFEPKPEVEYGEIEFLEEDAEIVEQSVSTLDRETDSDGAPTRKLPRKKKKSERTGYRQYSQADLKKCVELLQQSEGLSQSQAARMFNIPTKTVNAKMRSLTKTNDDENKTTEGQKTEITKHRDNIQTILKNTNATPIKGHRGIGYMCNFCPKQYPKAADLKSHTFTHKDIWKKFKVPIVFAYSVKLDITGLKCKICHSDIDDLSLEDAMEHLKSHKKIVHTDIKNHIIPFKFDTLALQCVKCDENFSYFKLLSAHMSKHYPNYRCKECGKGFINKHSRRTHMSRHNIGEFSCRICDKTFSTKSKMMDHQRVVHILQNKTHRCSYCSERFVDVVQKSNHEVSAHGAEAKKFICQYCNKIYDSQRSVTAHVKRIHLMLKPHKCHFCEKCFFKKSSLMNHLVTHTGEKKYECSLCSKTFGTRSTLVKHRQTHDHVSEEFLCFDCGKTFPLLSQFQSHLREGSQDSPLTEEKQEKREKIELQYKFVEEIQTILQVTNSVPFKVKSTYLYCAYCYLSGSRFEDPDELRLHTFEKHQDDRTAAIEGMLRPVHLNEILRIDVTNLSCMVCVTRIAGWNEMFQHLFDIHNLEFDQAYTRLIPYKLSHNYPCALCNESHTHFHNLDSHMNAHYNNHVCPECGDTFITVSRIKKHMDIHSTGTFPCQRCNKVFTLKKYRDKHTAMVHEQAKMYKCFYCPEGYSTEYGKHLHVRECHKEKLKFINCEICGKVFDWRPYYLAHLRKTHYKVRRYQCTFCMKWFGDNHNYKLHVQRHTGEGKFYCDVCNKNFVRQNELRQHKAGHEKTRNVKGKKGKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-